Wall clock time and date at job start Mon Mar 30 2020 02:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46624 * 2 1 4 4 C 1.50700 * 109.46986 * 119.99942 * 2 1 3 5 5 H 1.07999 * 119.99988 * 120.00054 * 4 2 1 6 6 C 1.37885 * 120.00047 * 300.00234 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47088 * 89.99795 * 8 6 4 10 10 H 1.48495 * 109.47293 * 209.99997 * 8 6 4 11 11 H 1.48507 * 109.47015 * 329.99955 * 8 6 4 12 12 C 1.50697 * 109.47070 * 240.00003 * 2 1 3 13 13 N 1.31127 * 126.54719 * 119.71013 * 12 2 1 14 14 C 1.34502 * 105.61398 * 179.91440 * 13 12 2 15 15 C 1.50693 * 126.29038 * 180.13165 * 14 13 12 16 16 H 1.09005 * 109.57620 * 0.23748 * 15 14 13 17 17 C 1.53136 * 109.57724 * 239.97880 * 15 14 13 18 18 N 1.47182 * 109.22263 * 240.22960 * 17 15 14 19 19 C 1.46943 * 111.01507 * 297.89211 * 18 17 15 20 20 C 1.53126 * 109.35236 * 62.03400 * 19 18 17 21 21 C 1.53382 * 109.58260 * 120.50135 * 15 14 13 22 22 C 1.53385 * 108.59627 * 60.84576 * 21 15 14 23 23 C 1.46945 * 111.13434 * 61.91963 * 18 17 15 24 24 N 1.29949 * 107.42143 * 0.35316 * 14 13 12 25 25 O 1.21304 * 110.25322 * 359.77468 * 24 14 13 26 26 H 1.08998 * 109.47453 * 300.00026 * 1 2 3 27 27 H 1.08996 * 109.47248 * 60.00351 * 1 2 3 28 28 H 1.09005 * 109.46932 * 180.02562 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.49144 * 0.15037 * 17 15 14 31 31 H 1.08998 * 109.49300 * 120.21537 * 17 15 14 32 32 H 1.08995 * 109.49283 * 302.06481 * 19 18 17 33 33 H 1.09011 * 109.49014 * 181.99407 * 19 18 17 34 34 H 1.08994 * 109.57321 * 240.24367 * 20 19 18 35 35 H 1.09004 * 109.57684 * 119.85450 * 20 19 18 36 36 H 1.08999 * 110.10997 * 299.41290 * 21 15 14 37 37 H 1.09005 * 109.57601 * 178.81314 * 22 21 15 38 38 H 1.08994 * 109.58253 * 299.19692 * 22 21 15 39 39 H 1.08998 * 109.49145 * 58.00251 * 23 18 17 40 40 H 1.08992 * 109.49664 * 178.08061 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9475 0.8331 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5439 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2304 13 7 2.7848 -0.1991 -2.1748 14 6 2.9806 -1.1930 -3.0596 15 6 3.7871 -1.1103 -4.3299 16 1 4.2042 -0.1085 -4.4331 17 6 2.8870 -1.4175 -5.5301 18 7 3.4100 -2.5968 -6.2387 19 6 4.7583 -2.3409 -6.7637 20 6 5.7108 -2.0562 -5.5991 21 6 4.9244 -2.1384 -4.2846 22 6 4.3125 -3.5400 -4.1673 23 6 3.3993 -3.7835 -5.3722 24 7 2.3426 -2.2364 -2.6202 25 8 1.7912 -1.9801 -1.5706 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.7129 1.1642 3.4844 30 1 1.8742 -1.6211 -5.1824 31 1 2.8750 -0.5613 -6.2044 32 1 4.7315 -1.4793 -7.4307 33 1 5.1068 -3.2157 -7.3130 34 1 6.1344 -1.0580 -5.7094 35 1 6.5113 -2.7960 -5.5926 36 1 5.5826 -1.9322 -3.4405 37 1 5.1074 -4.2857 -4.1550 38 1 3.7306 -3.6088 -3.2483 39 1 2.3831 -3.9720 -5.0261 40 1 3.7590 -4.6463 -5.9326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333755723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:22 Heat of formation + Delta-G solvation = 48.097939 kcal Electronic energy + Delta-G solvation = -22248.824977 eV Core-core repulsion = 19065.585070 eV Total energy + Delta-G solvation = -3183.239907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.41838 -41.76117 -37.08495 -36.57444 -34.18703 -33.14321 -32.31651 -32.00156 -30.94620 -27.39294 -25.69652 -25.21820 -24.12482 -23.87185 -23.57056 -21.50526 -19.15073 -18.73818 -18.32398 -18.02707 -17.32104 -17.22334 -16.81536 -16.68799 -15.61889 -14.98771 -14.67702 -14.01215 -13.97420 -13.75806 -13.62069 -13.51157 -13.28155 -13.16994 -13.09354 -13.04459 -12.88641 -12.62895 -12.56024 -12.38136 -12.26142 -12.12306 -11.92182 -11.71361 -11.40929 -11.19989 -11.15101 -10.64153 -10.56732 -9.27245 -8.23924 -6.40521 0.27474 1.32549 1.42969 1.45170 1.55136 2.06528 2.37999 2.65634 2.93876 3.06191 3.19979 3.57169 3.64580 3.82740 3.95436 4.10108 4.18691 4.25009 4.29343 4.36128 4.42771 4.61664 4.69833 4.73078 4.80629 4.87197 4.92003 4.94644 5.01625 5.03554 5.06528 5.08787 5.14300 5.15303 5.32261 5.39273 5.62813 5.80959 5.99423 6.02225 6.11973 6.60888 7.28372 7.28889 8.81987 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.004301 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.622223 B = 6508.240525 C = 6774.217061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.126 3.874 3 H 0.053 0.947 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.234 3.766 13 N -0.530 5.530 14 C 0.173 3.827 15 C -0.023 4.023 16 H 0.106 0.894 17 C 0.070 3.930 18 N -0.529 5.529 19 C 0.050 3.950 20 C -0.137 4.137 21 C -0.082 4.082 22 C -0.158 4.158 23 C 0.061 3.939 24 N -0.401 5.401 25 O 0.048 5.952 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.271 0.729 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -5.566 -16.144 18.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.070 0.930 4 C -0.582 4.582 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.541 5.541 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.015 3.985 13 N -0.264 5.264 14 C -0.100 4.100 15 C -0.045 4.045 16 H 0.124 0.876 17 C -0.059 4.059 18 N -0.249 5.249 19 C -0.077 4.077 20 C -0.176 4.176 21 C -0.102 4.102 22 C -0.197 4.197 23 C -0.067 4.067 24 N -0.117 5.117 25 O -0.002 6.002 26 H 0.103 0.897 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.606 -5.990 -17.044 19.236 hybrid contribution 0.558 0.045 2.271 2.339 sum 7.163 -5.945 -14.773 17.461 Atomic orbital electron populations 1.21687 0.94506 1.00687 1.01601 1.17614 0.94700 0.94098 0.83011 0.92952 1.21020 1.33460 1.13248 0.90491 0.93196 1.25569 0.94513 0.95427 1.01436 1.69939 1.36145 1.22903 1.25103 0.85480 0.78341 0.78846 0.78607 1.20041 1.19813 1.19678 1.29786 0.90480 0.81398 0.96809 1.71977 1.19513 1.30659 1.04295 1.26241 0.99170 0.84900 0.99681 1.20556 0.94675 1.02407 0.86873 0.87575 1.22259 0.96546 0.94724 0.92421 1.62616 1.23950 1.03247 1.35116 1.22386 0.85771 1.03587 0.96001 1.22226 0.98659 1.03718 0.93016 1.21147 0.95075 0.94139 0.99842 1.22369 1.00198 0.96505 1.00595 1.22101 0.99118 0.93495 0.91977 1.74483 1.14389 1.24080 0.98712 1.85253 1.55067 1.30388 1.29479 0.89702 0.94662 0.94017 0.91934 0.92541 0.87554 0.88945 0.88850 0.90204 0.89803 0.91841 0.90384 0.92688 0.92383 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.95 71.98 0.64 -5.20 16 2 C 0.13 6.33 2.77 -12.29 -0.03 6.30 16 3 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 4 C -0.54 -29.22 8.55 25.60 0.22 -29.00 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.03 1.68 5.30 84.66 0.45 2.13 16 7 N -0.90 -48.38 11.33 21.45 0.24 -48.14 16 8 Si 0.96 41.73 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.23 10.95 6.96 88.38 0.61 11.57 16 13 N -0.53 -23.47 11.55 -303.17 -3.50 -26.97 16 14 C 0.17 6.62 6.29 138.46 0.87 7.49 16 15 C -0.02 -0.66 2.72 -11.37 -0.03 -0.69 16 16 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 17 C 0.07 1.73 5.78 86.29 0.50 2.23 16 18 N -0.53 -11.33 5.22 -894.43 -4.67 -16.00 16 19 C 0.05 0.78 6.09 86.34 0.53 1.30 16 20 C -0.14 -2.28 5.75 30.77 0.18 -2.10 16 21 C -0.08 -2.02 2.97 -10.41 -0.03 -2.05 16 22 C -0.16 -4.03 5.35 30.77 0.16 -3.86 16 23 C 0.06 1.41 6.10 86.34 0.53 1.94 16 24 N -0.40 -16.30 9.48 -60.29 -0.57 -16.87 16 25 O 0.05 2.16 11.31 74.83 0.85 3.00 16 26 H 0.08 4.21 6.08 -2.39 -0.01 4.19 16 27 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.06 1.66 7.57 -2.39 -0.02 1.64 16 31 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.80 5.51 -2.39 -0.01 1.79 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -58.29 314.38 0.00 -58.30 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.03 Total: 12.86 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.59 Total: -9.94 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -8.50 Total: -107.97 kcal Atomic # 8 Polarization: 2.16 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -58.29 0.00 -58.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333755723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.396 kcal (2) G-P(sol) polarization free energy of solvation -58.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds