Wall clock time and date at job start Mon Mar 30 2020 02:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50691 * 109.47050 * 120.00060 * 2 1 3 5 5 H 1.08010 * 120.00036 * 119.99979 * 4 2 1 6 6 C 1.37874 * 120.00653 * 300.00260 * 4 2 1 7 7 N 1.31524 * 119.99584 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00720 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46754 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47196 * 119.99834 * 8 6 4 11 11 H 1.48497 * 109.47437 * 240.00212 * 8 6 4 12 12 C 1.50698 * 109.47083 * 240.00370 * 2 1 3 13 13 N 1.31132 * 126.55231 * 119.97634 * 12 2 1 14 14 C 1.34484 * 105.61843 * 180.02562 * 13 12 2 15 15 C 1.50700 * 126.28894 * 180.26504 * 14 13 12 16 16 H 1.08991 * 109.57778 * 359.45028 * 15 14 13 17 17 C 1.53149 * 109.57846 * 119.71039 * 15 14 13 18 18 N 1.46902 * 109.37283 * 119.79122 * 17 15 14 19 19 C 1.46946 * 111.05527 * 62.00534 * 18 17 15 20 20 C 1.53130 * 109.35134 * 298.04441 * 19 18 17 21 21 C 1.53380 * 109.57833 * 239.04623 * 15 14 13 22 22 C 1.53395 * 108.60358 * 299.16712 * 21 15 14 23 23 C 1.46946 * 111.05836 * 298.01003 * 18 17 15 24 24 N 1.29954 * 107.42396 * 359.97438 * 14 13 12 25 25 O 1.21294 * 110.24985 * 0.02562 * 24 14 13 26 26 H 1.09006 * 109.46557 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47019 * 299.99799 * 1 2 3 28 28 H 1.09004 * 109.46979 * 59.99741 * 1 2 3 29 29 H 0.96997 * 119.99654 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.48824 * 239.76278 * 17 15 14 31 31 H 1.09001 * 109.48633 * 359.80040 * 17 15 14 32 32 H 1.08999 * 109.49310 * 58.00521 * 19 18 17 33 33 H 1.09003 * 109.49155 * 178.08426 * 19 18 17 34 34 H 1.08999 * 109.57346 * 240.12483 * 20 19 18 35 35 H 1.08994 * 109.68087 * 119.80369 * 20 19 18 36 36 H 1.09001 * 110.11543 * 59.80654 * 21 15 14 37 37 H 1.08990 * 109.57922 * 181.19201 * 22 21 15 38 38 H 1.09004 * 109.67836 * 60.86626 * 22 21 15 39 39 H 1.08998 * 109.48899 * 181.92455 * 23 18 17 40 40 H 1.09005 * 109.48833 * 301.97093 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3213 -1.1205 4.0079 9 1 3.1465 -2.2871 3.6036 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5869 4.8159 12 6 2.0324 -0.7103 -1.2305 13 7 2.7889 -0.2005 -2.1724 14 6 2.9808 -1.1928 -3.0596 15 6 3.7918 -1.1116 -4.3271 16 1 4.2044 -0.1084 -4.4331 17 6 4.9323 -2.1324 -4.2729 18 7 4.7929 -3.0784 -5.3881 19 6 4.8920 -2.3880 -6.6815 20 6 3.7510 -1.3741 -6.8042 21 6 2.8974 -1.4324 -5.5311 22 6 2.3543 -2.8581 -5.3711 23 6 3.5344 -3.8304 -5.2884 24 7 2.3434 -2.2365 -2.6198 25 8 1.7918 -1.9802 -1.5704 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7087 1.1610 3.4844 30 1 5.8880 -1.6144 -4.3527 31 1 4.8903 -2.6746 -3.3283 32 1 5.8483 -1.8688 -6.7444 33 1 4.8194 -3.1165 -7.4891 34 1 3.1348 -1.6206 -7.6688 35 1 4.1621 -0.3716 -6.9226 36 1 2.0731 -0.7214 -5.5857 37 1 1.7326 -3.1106 -6.2300 38 1 1.7616 -2.9249 -4.4588 39 1 3.4732 -4.5471 -6.1074 40 1 3.5025 -4.3616 -4.3371 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333755838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:31 Heat of formation + Delta-G solvation = 65.455266 kcal Electronic energy + Delta-G solvation = -22241.729217 eV Core-core repulsion = 19059.241979 eV Total energy + Delta-G solvation = -3182.487237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.76999 -40.77352 -35.34437 -34.84877 -32.64294 -31.97763 -31.03612 -30.87068 -29.35560 -25.40690 -24.39533 -23.50892 -23.14676 -22.89919 -22.05505 -19.90644 -17.58124 -17.37155 -16.96869 -16.40348 -16.19556 -16.00727 -15.53847 -14.95540 -13.78887 -13.63404 -13.15659 -12.96735 -12.89024 -12.51833 -12.38416 -12.26940 -12.18717 -11.87076 -11.65598 -11.62540 -11.22250 -11.06659 -10.84803 -10.78451 -10.64726 -10.44026 -10.36507 -10.29046 -10.14120 -10.01580 -9.46937 -8.89442 -8.59423 -8.28936 -6.23855 -4.33086 1.97510 2.96653 3.21634 3.29995 3.35342 3.79515 3.90181 4.06059 4.29381 4.42832 4.69711 4.75809 4.86884 5.04613 5.08592 5.10930 5.15500 5.20343 5.29168 5.34340 5.56170 5.64899 5.74106 5.85747 5.89927 5.99420 6.05122 6.07523 6.14726 6.34290 6.52302 6.56752 6.68593 6.83212 6.85433 6.96853 7.00995 7.36433 7.60254 7.78436 7.98563 8.66454 8.98257 9.33365 10.82422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035605 B = 0.004249 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.214397 B = 6587.684474 C = 6832.071232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.124 3.876 3 H 0.074 0.926 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.070 3.930 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.280 1.280 12 C 0.244 3.756 13 N -0.517 5.517 14 C 0.165 3.835 15 C -0.021 4.021 16 H 0.098 0.902 17 C 0.064 3.936 18 N -0.528 5.528 19 C 0.051 3.949 20 C -0.146 4.146 21 C -0.080 4.080 22 C -0.159 4.159 23 C 0.057 3.943 24 N -0.403 5.403 25 O 0.065 5.935 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.016 0.984 29 H 0.266 0.734 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -4.432 -15.528 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.104 3.896 3 H 0.092 0.908 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.026 3.974 13 N -0.250 5.250 14 C -0.108 4.108 15 C -0.043 4.043 16 H 0.117 0.883 17 C -0.066 4.066 18 N -0.248 5.248 19 C -0.077 4.077 20 C -0.185 4.185 21 C -0.100 4.100 22 C -0.198 4.198 23 C -0.071 4.071 24 N -0.116 5.116 25 O 0.012 5.988 26 H 0.058 0.942 27 H 0.119 0.881 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.542 -5.124 -15.961 17.367 hybrid contribution -0.530 0.368 0.958 1.155 sum 4.013 -4.756 -15.002 16.242 Atomic orbital electron populations 1.21853 0.95611 1.00608 1.01577 1.17826 0.93806 0.95276 0.82706 0.90796 1.20908 1.32835 1.13164 0.89178 0.91921 1.24880 0.94519 0.94837 0.99080 1.69865 1.35732 1.22428 1.24150 0.86331 0.78771 0.79665 0.82136 1.19563 1.20708 1.20616 1.30125 0.89552 0.80945 0.96742 1.71968 1.19432 1.29693 1.03919 1.25439 1.00175 0.86220 0.98989 1.20228 0.94575 1.02266 0.87212 0.88341 1.22268 0.96660 0.92441 0.95197 1.62533 1.34456 1.25644 1.02131 1.22232 0.97955 0.95813 0.91740 1.22243 0.98294 1.00700 0.97296 1.21117 0.97533 0.98032 0.93314 1.22418 0.99423 0.94508 1.03468 1.22140 0.86781 0.95515 1.02651 1.74429 1.14171 1.24131 0.98890 1.85258 1.54505 1.30660 1.28390 0.94208 0.88060 0.96515 0.92387 0.89800 0.90109 0.90553 0.90622 0.91336 0.91368 0.90338 0.92038 0.89257 0.91006 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.95 37.16 0.33 -2.80 16 2 C 0.12 3.02 2.77 -92.93 -0.26 2.77 16 3 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 4 C -0.52 -13.70 8.55 -34.45 -0.29 -13.99 16 5 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -23.47 11.32 55.43 0.63 -22.85 16 8 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 9 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.24 5.56 6.96 -13.06 -0.09 5.47 16 13 N -0.52 -11.25 11.55 -9.87 -0.11 -11.36 16 14 C 0.16 3.13 6.30 -156.38 -0.98 2.14 16 15 C -0.02 -0.31 2.73 -91.50 -0.25 -0.56 16 16 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.06 0.86 5.75 -3.75 -0.02 0.84 16 18 N -0.53 -6.43 5.22 -234.28 -1.22 -7.65 16 19 C 0.05 0.50 6.09 -3.73 -0.02 0.47 16 20 C -0.15 -1.44 5.75 -26.46 -0.15 -1.59 16 21 C -0.08 -1.02 2.97 -90.01 -0.27 -1.29 16 22 C -0.16 -2.07 5.34 -26.46 -0.14 -2.21 16 23 C 0.06 0.71 6.09 -3.73 -0.02 0.69 16 24 N -0.40 -8.01 9.46 30.90 0.29 -7.71 16 25 O 0.07 1.43 11.31 18.10 0.20 1.64 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.27 7.57 -51.93 -0.39 0.87 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 314.33 15.07 4.74 4.74 Total: -1.00 -26.91 314.33 -8.79 -35.70 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.03 Total: 0.50 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -2.27 Total: -8.33 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.42 Total: -49.57 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.20 Total: 1.64 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.91 -8.79 -35.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333755838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.156 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds