Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47593 * 12.07108 * 3 2 1 5 5 C 1.37097 * 119.99839 * 273.78944 * 4 3 2 6 6 H 1.08000 * 120.00335 * 139.22971 * 5 4 3 7 7 C 1.38953 * 119.99986 * 319.50994 * 5 4 3 8 8 N 1.31409 * 119.99919 * 167.04159 * 7 5 4 9 9 Si 1.86796 * 120.00013 * 347.03640 * 7 5 4 10 10 H 1.48495 * 109.47122 * 95.58389 * 9 7 5 11 11 H 1.48500 * 109.47163 * 215.58348 * 9 7 5 12 12 H 1.48499 * 109.47116 * 335.58593 * 9 7 5 13 13 C 1.34771 * 120.00185 * 93.78308 * 4 3 2 14 14 O 1.21286 * 120.00360 * 175.23100 * 13 4 3 15 15 C 1.50700 * 119.99867 * 355.23263 * 13 4 3 16 16 H 1.09003 * 109.58398 * 54.76230 * 15 13 4 17 17 C 1.53233 * 109.58345 * 294.48873 * 15 13 4 18 18 N 1.47273 * 108.80726 * 240.21304 * 17 15 13 19 19 C 1.47307 * 110.15452 * 60.80282 * 18 17 15 20 20 C 1.53205 * 108.80838 * 299.18697 * 19 18 17 21 21 N 1.47272 * 109.58279 * 175.17411 * 15 13 4 22 22 C 1.47319 * 110.15669 * 180.60236 * 21 15 13 23 23 C 1.47313 * 110.15293 * 299.18409 * 18 17 15 24 24 H 1.09003 * 109.58086 * 301.01244 * 23 18 17 25 25 C 1.52997 * 109.58023 * 180.60217 * 23 18 17 26 26 H 4.40646 * 5.51313 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.47004 * 252.07182 * 3 2 1 28 28 H 1.08999 * 109.47190 * 132.07354 * 3 2 1 29 29 H 0.97005 * 120.00100 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.58196 * 0.02562 * 17 15 13 31 31 H 1.09006 * 109.58104 * 120.27397 * 17 15 13 32 32 H 1.09005 * 109.58286 * 58.98864 * 19 18 17 33 33 H 1.09008 * 109.57846 * 179.39170 * 19 18 17 34 34 H 1.09002 * 109.57930 * 119.80242 * 20 19 18 35 35 H 1.08999 * 109.58730 * 240.07148 * 20 19 18 36 36 H 1.08997 * 109.58093 * 58.98688 * 22 21 15 37 37 H 1.09003 * 109.57753 * 179.39277 * 22 21 15 38 38 H 1.09001 * 109.47105 * 60.00405 * 25 23 18 39 39 H 1.09006 * 109.47134 * 179.97438 * 25 23 18 40 40 H 1.08992 * 109.47465 * 300.00002 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3498 -0.2888 5 6 3.2900 -2.2550 0.7291 6 1 3.0034 -3.2860 0.5832 7 6 3.8105 -1.8447 1.9504 8 7 3.7259 -2.6327 2.9986 9 14 4.6304 -0.1732 2.1022 10 1 3.6453 0.8176 2.6049 11 1 5.7689 -0.2647 3.0512 12 1 5.1290 0.2562 0.7709 13 6 3.4325 -1.7023 -1.5552 14 8 3.9186 -2.7897 -1.7838 15 6 3.1612 -0.7452 -2.6872 16 1 3.6510 0.2074 -2.4856 17 6 1.6507 -0.5271 -2.8245 18 7 1.2289 -0.9580 -4.1681 19 6 1.5211 -2.3893 -4.3572 20 6 3.0314 -2.6074 -4.2202 21 7 3.6753 -1.3111 -3.9459 22 6 3.4293 -0.3786 -5.0596 23 6 1.9191 -0.1607 -5.1967 24 1 1.6881 0.8953 -5.0563 25 6 1.4604 -0.6085 -6.5859 26 1 -1.0497 -0.0004 0.0001 27 1 3.0092 0.3172 0.9778 28 1 3.0090 0.6894 -0.7628 29 1 4.0888 -2.3462 3.8514 30 1 1.1267 -1.1149 -2.0708 31 1 1.4203 0.5296 -2.6883 32 1 0.9976 -2.9723 -3.5994 33 1 1.1956 -2.7006 -5.3499 34 1 3.2281 -3.2944 -3.3971 35 1 3.4258 -3.0248 -5.1466 36 1 3.9187 0.5734 -4.8538 37 1 3.8228 -0.8016 -5.9839 38 1 0.3839 -0.4640 -6.6773 39 1 1.9718 -0.0172 -7.3456 40 1 1.6985 -1.6631 -6.7247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347544395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = 88.477626 kcal Electronic energy + Delta-G solvation = -23267.285847 eV Core-core repulsion = 20085.796934 eV Total energy + Delta-G solvation = -3181.488913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32972 -38.53126 -35.57600 -33.36206 -32.79699 -32.16951 -31.71789 -30.89722 -27.60555 -26.81865 -25.03010 -23.69132 -23.11098 -22.14383 -19.48621 -18.68266 -17.58479 -17.30858 -16.76936 -16.47531 -15.96636 -15.72383 -14.93146 -14.42184 -13.76282 -13.64043 -13.28247 -13.24898 -12.95323 -12.90654 -12.75151 -12.56474 -12.35074 -12.07721 -11.96912 -11.59383 -11.34508 -11.16645 -10.96544 -10.71928 -10.46992 -10.26017 -10.17425 -9.76482 -9.62536 -9.52431 -9.08551 -8.49481 -7.93792 -7.43584 -6.41076 -4.08811 2.95542 3.11097 3.14018 3.14438 3.32146 3.56867 3.80247 4.07084 4.13760 4.48776 4.66588 4.76303 4.86710 5.00874 5.08198 5.14189 5.25153 5.31581 5.43463 5.45720 5.51644 5.66111 5.67761 5.70399 5.79601 5.85924 5.88959 5.97125 6.01975 6.11471 6.14509 6.36494 6.48648 6.75259 6.91603 7.27377 7.34840 7.50475 8.05623 8.20225 8.41350 8.86817 9.20631 9.63425 10.70623 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.006553 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.722517 B = 4271.504554 C = 4565.639384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.193 3.807 4 N -0.463 5.463 5 C -0.311 4.311 6 H 0.106 0.894 7 C 0.061 3.939 8 N -0.867 5.867 9 Si 0.878 3.122 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.486 3.514 14 O -0.535 6.535 15 C 0.023 3.977 16 H 0.098 0.902 17 C 0.022 3.978 18 N -0.509 5.509 19 C 0.008 3.992 20 C -0.008 4.008 21 N -0.491 5.491 22 C 0.014 3.986 23 C 0.033 3.967 24 H 0.084 0.916 25 C -0.139 4.139 26 H 0.213 0.787 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.275 0.725 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 8.415 -13.665 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.177 4.177 3 C 0.071 3.929 4 N -0.185 5.185 5 C -0.438 4.438 6 H 0.123 0.877 7 C -0.145 4.145 8 N -0.503 5.503 9 Si 0.707 3.293 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.187 1.187 13 C 0.273 3.727 14 O -0.415 6.415 15 C -0.091 4.091 16 H 0.116 0.884 17 C -0.108 4.108 18 N -0.231 5.231 19 C -0.122 4.122 20 C -0.137 4.137 21 N -0.212 5.212 22 C -0.116 4.116 23 C -0.077 4.077 24 H 0.102 0.898 25 C -0.197 4.197 26 H 0.230 0.770 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.464 7.783 -13.562 16.261 hybrid contribution 0.179 1.049 0.399 1.137 sum -4.285 8.832 -13.164 16.421 Atomic orbital electron populations 1.24704 0.95613 1.00504 1.01997 1.23578 0.94714 1.00061 0.99389 1.18924 0.84263 0.87946 1.01813 1.43641 1.57468 1.10765 1.06584 1.19011 1.41868 0.93167 0.89774 0.87696 1.25380 0.95581 0.98157 0.95392 1.69657 1.42968 1.37371 1.00307 0.86911 0.79746 0.83823 0.78869 1.19995 1.21107 1.18679 1.19872 0.81078 0.88483 0.83220 1.90423 1.45093 1.23766 1.82183 1.22420 0.96167 0.99064 0.91483 0.88394 1.23078 0.93840 1.02272 0.91638 1.63969 1.53535 1.03518 1.02078 1.22946 0.97205 0.89391 1.02615 1.23399 0.92194 0.93286 1.04861 1.63608 1.54066 1.03017 1.00460 1.23051 0.95332 0.97701 0.95543 1.22464 0.93758 0.98557 0.92950 0.89798 1.21860 1.01709 1.01373 0.94721 0.76995 0.89745 0.89512 0.91468 0.88707 0.90063 0.90411 0.90343 0.85436 0.91203 0.90570 0.89994 0.92072 0.92217 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.42 18.80 29.55 0.56 -2.86 16 2 C -0.18 -3.29 10.76 -37.12 -0.40 -3.69 16 3 C 0.19 3.88 4.21 -6.83 -0.03 3.85 16 4 N -0.46 -11.01 2.13 -117.93 -0.25 -11.26 16 5 C -0.31 -8.70 9.33 -14.93 -0.14 -8.84 16 6 H 0.11 3.30 8.01 -52.49 -0.42 2.88 16 7 C 0.06 1.67 5.43 -17.47 -0.09 1.58 16 8 N -0.87 -25.07 13.96 55.50 0.77 -24.29 16 9 Si 0.88 20.24 24.66 -169.99 -4.19 16.05 16 10 H -0.27 -5.88 6.86 56.52 0.39 -5.49 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.26 -5.81 6.89 56.52 0.39 -5.42 16 13 C 0.49 11.13 6.43 -10.99 -0.07 11.06 16 14 O -0.54 -14.03 13.47 5.55 0.07 -13.96 16 15 C 0.02 0.41 2.02 -68.54 -0.14 0.27 16 16 H 0.10 1.63 6.97 -51.93 -0.36 1.27 16 17 C 0.02 0.35 3.91 -3.50 -0.01 0.34 16 18 N -0.51 -7.44 5.24 -225.24 -1.18 -8.62 16 19 C 0.01 0.12 5.75 -3.49 -0.02 0.10 16 20 C -0.01 -0.14 5.70 -3.49 -0.02 -0.16 16 21 N -0.49 -8.35 5.09 -226.62 -1.15 -9.51 16 22 C 0.01 0.18 5.80 -3.49 -0.02 0.16 16 23 C 0.03 0.40 3.05 -67.38 -0.21 0.20 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.14 -1.38 8.63 37.16 0.32 -1.06 16 26 H 0.21 2.60 7.80 -54.10 -0.42 2.18 16 27 H 0.09 1.79 2.78 -51.93 -0.14 1.65 16 28 H 0.09 1.45 6.11 -51.93 -0.32 1.13 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 1.75 5.56 -51.93 -0.29 1.46 16 31 H 0.08 1.18 7.97 -51.93 -0.41 0.77 16 32 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.01 6.17 -51.92 -0.32 0.69 16 34 H 0.13 2.63 5.03 -51.93 -0.26 2.37 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.98 7.61 -51.93 -0.40 0.58 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.59 6.31 -51.93 -0.33 0.27 16 LS Contribution 302.69 15.07 4.56 4.56 Total: -1.00 -31.18 302.69 -7.01 -38.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.37 Total: 7.90 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.27 Total: 0.94 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -1.81 Total: -53.68 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: 0.07 Total: -13.96 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.19 Total: 16.05 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.18 -7.01 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.666 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds