Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47593 * 12.07108 * 3 2 1 5 5 C 1.37097 * 119.99839 * 273.78944 * 4 3 2 6 6 H 1.08000 * 120.00335 * 139.22971 * 5 4 3 7 7 C 1.38953 * 119.99986 * 319.50994 * 5 4 3 8 8 N 1.31409 * 119.99919 * 167.04159 * 7 5 4 9 9 Si 1.86796 * 120.00013 * 347.03640 * 7 5 4 10 10 H 1.48495 * 109.47122 * 95.58389 * 9 7 5 11 11 H 1.48500 * 109.47163 * 215.58348 * 9 7 5 12 12 H 1.48499 * 109.47116 * 335.58593 * 9 7 5 13 13 C 1.34771 * 120.00185 * 93.78308 * 4 3 2 14 14 O 1.21286 * 120.00360 * 175.23100 * 13 4 3 15 15 C 1.50700 * 119.99867 * 355.23263 * 13 4 3 16 16 H 1.09003 * 109.58398 * 54.76230 * 15 13 4 17 17 C 1.53233 * 109.58345 * 294.48873 * 15 13 4 18 18 N 1.47273 * 108.80726 * 240.21304 * 17 15 13 19 19 C 1.47307 * 110.15452 * 60.80282 * 18 17 15 20 20 C 1.53205 * 108.80838 * 299.18697 * 19 18 17 21 21 N 1.47272 * 109.58279 * 175.17411 * 15 13 4 22 22 C 1.47319 * 110.15669 * 180.60236 * 21 15 13 23 23 C 1.47313 * 110.15293 * 299.18409 * 18 17 15 24 24 H 1.09003 * 109.58086 * 301.01244 * 23 18 17 25 25 C 1.52997 * 109.58023 * 180.60217 * 23 18 17 26 26 H 4.40646 * 5.51313 * 179.97438 * 4 1 2 27 27 H 1.09005 * 109.47004 * 252.07182 * 3 2 1 28 28 H 1.08999 * 109.47190 * 132.07354 * 3 2 1 29 29 H 0.97005 * 120.00100 * 180.02562 * 8 7 5 30 30 H 1.09001 * 109.58196 * 0.02562 * 17 15 13 31 31 H 1.09006 * 109.58104 * 120.27397 * 17 15 13 32 32 H 1.09005 * 109.58286 * 58.98864 * 19 18 17 33 33 H 1.09008 * 109.57846 * 179.39170 * 19 18 17 34 34 H 1.09002 * 109.57930 * 119.80242 * 20 19 18 35 35 H 1.08999 * 109.58730 * 240.07148 * 20 19 18 36 36 H 1.08997 * 109.58093 * 58.98688 * 22 21 15 37 37 H 1.09003 * 109.57753 * 179.39277 * 22 21 15 38 38 H 1.09001 * 109.47105 * 60.00405 * 25 23 18 39 39 H 1.09006 * 109.47134 * 179.97438 * 25 23 18 40 40 H 1.08992 * 109.47465 * 300.00002 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3498 -0.2888 5 6 3.2900 -2.2550 0.7291 6 1 3.0034 -3.2860 0.5832 7 6 3.8105 -1.8447 1.9504 8 7 3.7259 -2.6327 2.9986 9 14 4.6304 -0.1732 2.1022 10 1 3.6453 0.8176 2.6049 11 1 5.7689 -0.2647 3.0512 12 1 5.1290 0.2562 0.7709 13 6 3.4325 -1.7023 -1.5552 14 8 3.9186 -2.7897 -1.7838 15 6 3.1612 -0.7452 -2.6872 16 1 3.6510 0.2074 -2.4856 17 6 1.6507 -0.5271 -2.8245 18 7 1.2289 -0.9580 -4.1681 19 6 1.5211 -2.3893 -4.3572 20 6 3.0314 -2.6074 -4.2202 21 7 3.6753 -1.3111 -3.9459 22 6 3.4293 -0.3786 -5.0596 23 6 1.9191 -0.1607 -5.1967 24 1 1.6881 0.8953 -5.0563 25 6 1.4604 -0.6085 -6.5859 26 1 -1.0497 -0.0004 0.0001 27 1 3.0092 0.3172 0.9778 28 1 3.0090 0.6894 -0.7628 29 1 4.0888 -2.3462 3.8514 30 1 1.1267 -1.1149 -2.0708 31 1 1.4203 0.5296 -2.6883 32 1 0.9976 -2.9723 -3.5994 33 1 1.1956 -2.7006 -5.3499 34 1 3.2281 -3.2944 -3.3971 35 1 3.4258 -3.0248 -5.1466 36 1 3.9187 0.5734 -4.8538 37 1 3.8228 -0.8016 -5.9839 38 1 0.3839 -0.4640 -6.6773 39 1 1.9718 -0.0172 -7.3456 40 1 1.6985 -1.6631 -6.7247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347544395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = 62.963704 kcal Electronic energy + Delta-G solvation = -23268.392214 eV Core-core repulsion = 20085.796934 eV Total energy + Delta-G solvation = -3182.595279 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.62897 -40.19494 -37.35106 -34.79957 -34.36397 -33.40066 -33.30344 -32.25570 -28.90504 -28.34133 -26.74438 -24.89258 -24.48902 -23.31761 -21.10786 -20.27962 -19.02302 -18.63278 -18.46111 -17.79209 -17.53770 -17.15141 -16.38970 -16.05503 -15.25322 -14.98450 -14.79199 -14.71066 -14.50176 -14.19559 -14.06571 -13.96051 -13.70674 -13.48571 -13.24862 -12.95433 -12.64735 -12.58998 -12.43310 -12.20373 -11.90079 -11.61379 -11.43685 -11.26813 -11.17726 -10.85201 -10.81810 -10.23574 -9.88965 -8.68457 -8.52145 -6.25770 1.14502 1.26988 1.37322 1.64038 1.85718 1.93204 2.13375 2.53401 2.76332 2.90564 3.16082 3.55165 3.62165 3.68125 3.73400 3.88810 3.96881 4.11159 4.16921 4.30519 4.35894 4.38960 4.47157 4.57781 4.67670 4.77624 4.81691 4.84756 4.95687 5.06331 5.09641 5.18024 5.30273 5.45043 5.58142 5.75777 5.96298 6.04504 6.20825 6.48551 6.73261 6.86644 7.17118 7.75124 8.64570 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.006553 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.722517 B = 4271.504554 C = 4565.639384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.227 4.227 3 C 0.193 3.807 4 N -0.473 5.473 5 C -0.324 4.324 6 H 0.042 0.958 7 C 0.009 3.991 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.242 1.242 11 H -0.286 1.286 12 H -0.246 1.246 13 C 0.477 3.523 14 O -0.582 6.582 15 C 0.033 3.967 16 H 0.120 0.880 17 C 0.033 3.967 18 N -0.509 5.509 19 C 0.016 3.984 20 C -0.004 4.004 21 N -0.512 5.512 22 C 0.015 3.985 23 C 0.034 3.966 24 H 0.102 0.898 25 C -0.134 4.134 26 H 0.251 0.749 27 H 0.075 0.925 28 H 0.124 0.876 29 H 0.280 0.720 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 12.344 -16.030 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.229 4.229 3 C 0.072 3.928 4 N -0.195 5.195 5 C -0.452 4.452 6 H 0.060 0.940 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.167 1.167 11 H -0.213 1.213 12 H -0.170 1.170 13 C 0.267 3.733 14 O -0.465 6.465 15 C -0.080 4.080 16 H 0.138 0.862 17 C -0.098 4.098 18 N -0.231 5.231 19 C -0.114 4.114 20 C -0.134 4.134 21 N -0.234 5.234 22 C -0.114 4.114 23 C -0.076 4.076 24 H 0.120 0.880 25 C -0.191 4.191 26 H 0.267 0.733 27 H 0.092 0.908 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.299 11.737 -15.951 20.501 hybrid contribution 0.347 -0.309 1.057 1.154 sum -4.952 11.429 -14.895 19.416 Atomic orbital electron populations 1.25600 0.96411 0.97687 0.99418 1.23525 0.94990 1.02530 1.01808 1.18981 0.85565 0.85863 1.02404 1.43708 1.58160 1.11691 1.05961 1.18567 1.42976 0.91963 0.91702 0.94002 1.26224 0.95599 1.03087 0.94334 1.69798 1.44351 1.40153 1.01132 0.85824 0.78821 0.78725 0.79556 1.16737 1.21313 1.16989 1.20913 0.79535 0.88675 0.84157 1.90421 1.46788 1.26091 1.83152 1.22332 0.97925 0.97867 0.89914 0.86203 1.22943 0.91807 1.03092 0.91951 1.64011 1.53778 1.03230 1.02050 1.22844 0.95513 0.89902 1.03143 1.23179 0.93726 0.92894 1.03588 1.63557 1.54708 1.03793 1.01358 1.23202 0.96332 0.97465 0.94394 1.22632 0.92744 0.99061 0.93138 0.88032 1.21839 1.02078 1.01434 0.93795 0.73283 0.90784 0.85853 0.91024 0.91614 0.87509 0.93027 0.87718 0.90185 0.89468 0.88925 0.88587 0.91881 0.89911 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 18.80 74.32 1.40 -3.78 16 2 C -0.23 -8.12 10.76 31.13 0.33 -7.79 16 3 C 0.19 7.48 4.21 84.57 0.36 7.84 16 4 N -0.47 -23.11 2.13 -645.42 -1.37 -24.48 16 5 C -0.32 -19.30 9.33 84.04 0.78 -18.52 16 6 H 0.04 2.93 8.01 -2.91 -0.02 2.91 16 7 C 0.01 0.52 5.43 84.93 0.46 0.98 16 8 N -0.92 -55.66 13.96 21.66 0.30 -55.36 16 9 Si 0.95 41.82 24.66 68.60 1.69 43.51 16 10 H -0.24 -9.46 6.86 99.48 0.68 -8.78 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.25 -10.12 6.89 99.48 0.69 -9.43 16 13 C 0.48 22.55 6.43 87.66 0.56 23.11 16 14 O -0.58 -32.62 13.47 -3.05 -0.04 -32.66 16 15 C 0.03 1.15 2.02 44.18 0.09 1.24 16 16 H 0.12 3.58 6.97 -2.39 -0.02 3.56 16 17 C 0.03 0.98 3.91 86.31 0.34 1.32 16 18 N -0.51 -13.52 5.24 -866.53 -4.54 -18.06 16 19 C 0.02 0.46 5.75 86.29 0.50 0.96 16 20 C 0.00 -0.15 5.70 86.29 0.49 0.34 16 21 N -0.51 -16.65 5.09 -870.90 -4.43 -21.08 16 22 C 0.02 0.34 5.80 86.29 0.50 0.84 16 23 C 0.03 0.68 3.05 44.90 0.14 0.81 16 24 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 25 C -0.13 -2.07 8.63 71.98 0.62 -1.45 16 26 H 0.25 5.10 7.80 -4.43 -0.03 5.06 16 27 H 0.07 2.99 2.78 -2.38 -0.01 2.99 16 28 H 0.12 3.72 6.11 -2.39 -0.01 3.70 16 29 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 30 H 0.07 2.39 5.56 -2.39 -0.01 2.38 16 31 H 0.11 2.67 7.97 -2.38 -0.02 2.65 16 32 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.10 2.48 6.17 -2.38 -0.01 2.46 16 34 H 0.08 3.52 5.03 -2.39 -0.01 3.51 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.10 1.88 7.61 -2.39 -0.02 1.86 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.05 0.88 6.31 -2.39 -0.02 0.86 16 Total: -1.00 -75.14 302.69 -0.82 -75.96 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 1.00 Total: 26.27 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 6.57 Total: 5.90 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -10.04 Total: -118.99 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.04 Total: -32.66 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.69 Total: 43.51 kcal Total: -75.14 -0.82 -75.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.924 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds