Wall clock time and date at job start Mon Mar 30 2020 02:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46575 * 181.91799 * 3 2 1 5 5 C 1.37099 * 120.00007 * 94.46568 * 4 3 2 6 6 H 1.07998 * 119.99373 * 216.80796 * 5 4 3 7 7 C 1.38946 * 120.00217 * 37.08574 * 5 4 3 8 8 N 1.31411 * 119.99766 * 213.05489 * 7 5 4 9 9 Si 1.86803 * 120.00133 * 33.04557 * 7 5 4 10 10 H 1.48499 * 109.46686 * 86.17574 * 9 7 5 11 11 H 1.48498 * 109.47150 * 206.17176 * 9 7 5 12 12 H 1.48496 * 109.47332 * 326.17872 * 9 7 5 13 13 C 1.34780 * 119.99767 * 274.45695 * 4 3 2 14 14 O 1.21296 * 119.99625 * 4.81862 * 13 4 3 15 15 C 1.50699 * 119.99821 * 184.81189 * 13 4 3 16 16 H 1.08997 * 109.57945 * 298.82446 * 15 13 4 17 17 C 1.53231 * 109.57971 * 59.10002 * 15 13 4 18 18 N 1.47273 * 108.80451 * 119.80554 * 17 15 13 19 19 C 1.47309 * 110.15842 * 60.80079 * 18 17 15 20 20 C 1.53207 * 108.80445 * 299.18591 * 19 18 17 21 21 N 1.47272 * 109.57891 * 178.55274 * 15 13 4 22 22 C 1.47317 * 110.15802 * 301.00992 * 21 15 13 23 23 C 1.47324 * 110.15034 * 299.17899 * 18 17 15 24 24 H 1.09000 * 109.57631 * 180.60342 * 23 18 17 25 25 C 1.53000 * 109.58309 * 301.01443 * 23 18 17 26 26 H 4.40639 * 5.51450 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47319 * 61.91421 * 3 2 1 28 28 H 1.08999 * 109.47018 * 301.90983 * 3 2 1 29 29 H 0.97002 * 119.99684 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.57955 * 239.59537 * 17 15 13 31 31 H 1.08997 * 109.58684 * 359.86541 * 17 15 13 32 32 H 1.08993 * 109.58697 * 58.98641 * 19 18 17 33 33 H 1.09008 * 109.58104 * 179.39588 * 19 18 17 34 34 H 1.09002 * 109.57667 * 119.80036 * 20 19 18 35 35 H 1.09001 * 109.58696 * 240.07340 * 20 19 18 36 36 H 1.08995 * 109.58172 * 58.98617 * 22 21 15 37 37 H 1.08997 * 109.58043 * 179.25317 * 22 21 15 38 38 H 1.08994 * 109.46928 * 59.99832 * 25 23 18 39 39 H 1.08998 * 109.47068 * 180.02562 * 25 23 18 40 40 H 1.09005 * 109.46936 * 300.00322 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3814 0.0462 5 6 3.4490 1.9571 1.2499 6 1 3.2347 3.0016 1.4214 7 6 4.0496 1.1982 2.2469 8 7 3.7891 1.4490 3.5103 9 14 5.2269 -0.1788 1.7914 10 1 6.5942 0.3751 1.6216 11 1 5.2366 -1.1989 2.8704 12 1 4.7859 -0.8069 0.5201 13 6 3.2724 2.0856 -1.0946 14 8 2.9118 1.6081 -2.1496 15 6 3.8754 3.4662 -1.0592 16 1 3.2587 4.1184 -0.4407 17 6 5.2908 3.3936 -0.4766 18 7 6.2445 3.8892 -1.4834 19 6 5.9420 5.2903 -1.8230 20 6 4.5269 5.3627 -2.4057 21 7 3.9492 4.0078 -2.4267 22 6 4.7658 3.1259 -3.2786 23 6 6.1858 3.0513 -2.6938 24 1 6.9023 3.4196 -3.4280 25 6 6.5176 1.6024 -2.3311 26 1 -1.0502 -0.0004 -0.0002 27 1 3.0097 -0.4830 -0.9066 28 1 3.0096 -0.5424 0.8724 29 1 4.2081 0.9189 4.2063 30 1 5.3497 4.0131 0.4184 31 1 5.5287 2.3608 -0.2222 32 1 5.9989 5.9045 -0.9244 33 1 6.6595 5.6507 -2.5603 34 1 3.9090 6.0115 -1.7848 35 1 4.5692 5.7598 -3.4199 36 1 4.3273 2.1283 -3.2979 37 1 4.8032 3.5282 -4.2909 38 1 5.7955 1.2361 -1.6015 39 1 6.4740 0.9844 -3.2279 40 1 7.5200 1.5548 -1.9057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347544396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:26 Heat of formation + Delta-G solvation = 78.932962 kcal Electronic energy + Delta-G solvation = -23545.410704 eV Core-core repulsion = 20363.507904 eV Total energy + Delta-G solvation = -3181.902800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.12160 -38.40448 -35.27041 -33.22558 -32.76037 -32.04038 -31.77137 -30.74894 -27.14588 -26.51365 -25.07506 -23.47406 -23.16487 -21.71236 -19.43533 -18.49390 -17.79151 -17.05829 -16.64056 -15.85004 -15.71709 -15.28651 -15.01700 -14.31357 -13.85628 -13.40951 -13.29793 -13.09872 -12.83227 -12.64095 -12.53891 -12.43964 -12.15779 -11.93959 -11.57459 -11.40394 -11.08685 -11.01326 -10.88420 -10.46910 -10.32494 -10.26604 -10.12420 -9.72410 -9.42924 -9.37266 -9.27108 -8.48734 -7.98994 -7.25678 -6.68991 -4.16196 2.98978 3.12522 3.17623 3.27712 3.56684 3.59761 3.99362 4.03711 4.33395 4.65044 4.76353 4.92817 5.12315 5.13581 5.20851 5.31737 5.57268 5.65341 5.72722 5.82403 5.83516 5.85630 5.93978 6.03444 6.05274 6.16339 6.22657 6.30633 6.33559 6.45164 6.52131 6.58466 6.63562 7.02388 7.07235 7.17889 7.49473 7.55591 7.92018 8.13343 8.31771 8.84005 9.22053 9.56949 10.41452 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.008612 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.439341 B = 3250.644105 C = 3802.009914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.163 4.163 3 C 0.214 3.786 4 N -0.454 5.454 5 C -0.360 4.360 6 H 0.101 0.899 7 C 0.082 3.918 8 N -0.831 5.831 9 Si 0.842 3.158 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.254 1.254 13 C 0.491 3.509 14 O -0.575 6.575 15 C 0.049 3.951 16 H 0.101 0.899 17 C 0.036 3.964 18 N -0.516 5.516 19 C 0.011 3.989 20 C 0.011 3.989 21 N -0.497 5.497 22 C 0.000 4.000 23 C 0.038 3.962 24 H 0.078 0.922 25 C -0.142 4.142 26 H 0.210 0.790 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.277 0.723 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 2.796 -7.347 8.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.164 4.164 3 C 0.092 3.908 4 N -0.175 5.175 5 C -0.486 4.486 6 H 0.119 0.881 7 C -0.129 4.129 8 N -0.463 5.463 9 Si 0.666 3.334 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.179 1.179 13 C 0.280 3.720 14 O -0.459 6.459 15 C -0.064 4.064 16 H 0.119 0.881 17 C -0.094 4.094 18 N -0.238 5.238 19 C -0.119 4.119 20 C -0.119 4.119 21 N -0.218 5.218 22 C -0.129 4.129 23 C -0.072 4.072 24 H 0.096 0.904 25 C -0.200 4.200 26 H 0.227 0.773 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.923 2.523 -7.615 8.930 hybrid contribution 0.368 -0.502 0.256 0.673 sum 4.291 2.021 -7.359 8.755 Atomic orbital electron populations 1.24642 0.95647 1.01179 1.03547 1.23836 0.95022 0.99439 0.98100 1.18772 0.83455 0.86500 1.02064 1.43588 1.56495 1.11087 1.06283 1.18876 1.42633 0.98431 0.88659 0.88137 1.25275 0.96155 0.97086 0.94399 1.69952 1.36660 1.39593 1.00083 0.87572 0.83600 0.82518 0.79722 1.19292 1.20567 1.17856 1.20050 0.81276 0.87447 0.83230 1.90467 1.53410 1.71766 1.30224 1.21985 0.98196 0.95927 0.90273 0.88098 1.22800 0.88721 1.03625 0.94269 1.64009 1.48222 1.01727 1.09869 1.22872 0.96610 0.91092 1.01318 1.22905 0.95211 0.91945 1.01859 1.63666 1.47571 1.01493 1.09034 1.23467 0.91837 1.01722 0.95869 1.22513 0.97623 0.94581 0.92501 0.90389 1.21877 1.01948 0.94519 1.01657 0.77280 0.89537 0.89060 0.91248 0.89495 0.88504 0.90285 0.90790 0.90501 0.90531 0.86280 0.91458 0.92047 0.92255 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.50 19.25 29.55 0.57 -3.93 16 2 C -0.16 -3.58 13.64 -37.12 -0.51 -4.09 16 3 C 0.21 4.77 4.01 -6.83 -0.03 4.74 16 4 N -0.45 -10.53 2.05 -117.93 -0.24 -10.77 16 5 C -0.36 -8.78 7.27 -14.93 -0.11 -8.89 16 6 H 0.10 2.59 7.25 -52.49 -0.38 2.21 16 7 C 0.08 2.00 5.03 -17.47 -0.09 1.92 16 8 N -0.83 -21.58 13.96 55.50 0.77 -20.81 16 9 Si 0.84 18.34 26.28 -169.99 -4.47 13.88 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.25 -5.31 5.57 56.52 0.31 -4.99 16 13 C 0.49 11.08 5.65 -10.98 -0.06 11.02 16 14 O -0.58 -13.93 13.50 5.54 0.07 -13.86 16 15 C 0.05 0.97 2.10 -68.54 -0.14 0.83 16 16 H 0.10 2.05 7.61 -51.93 -0.40 1.65 16 17 C 0.04 0.67 4.17 -3.50 -0.01 0.65 16 18 N -0.52 -8.52 5.24 -224.90 -1.18 -9.70 16 19 C 0.01 0.16 6.13 -3.49 -0.02 0.13 16 20 C 0.01 0.16 6.12 -3.49 -0.02 0.14 16 21 N -0.50 -8.99 5.05 -226.28 -1.14 -10.14 16 22 C 0.00 0.01 5.38 -3.21 -0.02 -0.01 16 23 C 0.04 0.60 3.05 -67.09 -0.20 0.40 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 25 C -0.14 -2.31 8.65 37.16 0.32 -1.98 16 26 H 0.21 3.10 7.80 -54.08 -0.42 2.68 16 27 H 0.09 1.85 7.63 -51.93 -0.40 1.46 16 28 H 0.09 2.00 4.43 -51.93 -0.23 1.77 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.10 2.02 4.76 -51.93 -0.25 1.78 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.12 2.38 4.73 -51.93 -0.25 2.14 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.16 5.54 -51.93 -0.29 0.88 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -27.83 307.66 -7.50 -35.33 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.63 Total: 10.50 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.33 Total: 0.93 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -1.79 Total: -51.42 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.07 Total: -13.86 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.47 Total: 13.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.83 -7.50 -35.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.265 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds