Wall clock time and date at job start Mon Mar 30 2020 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46575 * 181.91799 * 3 2 1 5 5 C 1.37099 * 120.00007 * 94.46568 * 4 3 2 6 6 H 1.07998 * 119.99373 * 216.80796 * 5 4 3 7 7 C 1.38946 * 120.00217 * 37.08574 * 5 4 3 8 8 N 1.31411 * 119.99766 * 213.05489 * 7 5 4 9 9 Si 1.86803 * 120.00133 * 33.04557 * 7 5 4 10 10 H 1.48499 * 109.46686 * 86.17574 * 9 7 5 11 11 H 1.48498 * 109.47150 * 206.17176 * 9 7 5 12 12 H 1.48496 * 109.47332 * 326.17872 * 9 7 5 13 13 C 1.34780 * 119.99767 * 274.45695 * 4 3 2 14 14 O 1.21296 * 119.99625 * 4.81862 * 13 4 3 15 15 C 1.50699 * 119.99821 * 184.81189 * 13 4 3 16 16 H 1.08997 * 109.57945 * 298.82446 * 15 13 4 17 17 C 1.53231 * 109.57971 * 59.10002 * 15 13 4 18 18 N 1.47273 * 108.80451 * 119.80554 * 17 15 13 19 19 C 1.47309 * 110.15842 * 60.80079 * 18 17 15 20 20 C 1.53207 * 108.80445 * 299.18591 * 19 18 17 21 21 N 1.47272 * 109.57891 * 178.55274 * 15 13 4 22 22 C 1.47317 * 110.15802 * 301.00992 * 21 15 13 23 23 C 1.47324 * 110.15034 * 299.17899 * 18 17 15 24 24 H 1.09000 * 109.57631 * 180.60342 * 23 18 17 25 25 C 1.53000 * 109.58309 * 301.01443 * 23 18 17 26 26 H 4.40639 * 5.51450 * 179.97438 * 4 1 2 27 27 H 1.08992 * 109.47319 * 61.91421 * 3 2 1 28 28 H 1.08999 * 109.47018 * 301.90983 * 3 2 1 29 29 H 0.97002 * 119.99684 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.57955 * 239.59537 * 17 15 13 31 31 H 1.08997 * 109.58684 * 359.86541 * 17 15 13 32 32 H 1.08993 * 109.58697 * 58.98641 * 19 18 17 33 33 H 1.09008 * 109.58104 * 179.39588 * 19 18 17 34 34 H 1.09002 * 109.57667 * 119.80036 * 20 19 18 35 35 H 1.09001 * 109.58696 * 240.07340 * 20 19 18 36 36 H 1.08995 * 109.58172 * 58.98617 * 22 21 15 37 37 H 1.08997 * 109.58043 * 179.25317 * 22 21 15 38 38 H 1.08994 * 109.46928 * 59.99832 * 25 23 18 39 39 H 1.08998 * 109.47068 * 180.02562 * 25 23 18 40 40 H 1.09005 * 109.46936 * 300.00322 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3814 0.0462 5 6 3.4490 1.9571 1.2499 6 1 3.2347 3.0016 1.4214 7 6 4.0496 1.1982 2.2469 8 7 3.7891 1.4490 3.5103 9 14 5.2269 -0.1788 1.7914 10 1 6.5942 0.3751 1.6216 11 1 5.2366 -1.1989 2.8704 12 1 4.7859 -0.8069 0.5201 13 6 3.2724 2.0856 -1.0946 14 8 2.9118 1.6081 -2.1496 15 6 3.8754 3.4662 -1.0592 16 1 3.2587 4.1184 -0.4407 17 6 5.2908 3.3936 -0.4766 18 7 6.2445 3.8892 -1.4834 19 6 5.9420 5.2903 -1.8230 20 6 4.5269 5.3627 -2.4057 21 7 3.9492 4.0078 -2.4267 22 6 4.7658 3.1259 -3.2786 23 6 6.1858 3.0513 -2.6938 24 1 6.9023 3.4196 -3.4280 25 6 6.5176 1.6024 -2.3311 26 1 -1.0502 -0.0004 -0.0002 27 1 3.0097 -0.4830 -0.9066 28 1 3.0096 -0.5424 0.8724 29 1 4.2081 0.9189 4.2063 30 1 5.3497 4.0131 0.4184 31 1 5.5287 2.3608 -0.2222 32 1 5.9989 5.9045 -0.9244 33 1 6.6595 5.6507 -2.5603 34 1 3.9090 6.0115 -1.7848 35 1 4.5692 5.7598 -3.4199 36 1 4.3273 2.1283 -3.2979 37 1 4.8032 3.5282 -4.2909 38 1 5.7955 1.2361 -1.6015 39 1 6.4740 0.9844 -3.2279 40 1 7.5200 1.5548 -1.9057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347544396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:25 Heat of formation + Delta-G solvation = 58.486556 kcal Electronic energy + Delta-G solvation = -23546.297327 eV Core-core repulsion = 20363.507904 eV Total energy + Delta-G solvation = -3182.789423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.54361 -40.09418 -37.07669 -34.61929 -34.43796 -33.70964 -33.16433 -32.23088 -28.68366 -27.95275 -26.91441 -24.84898 -24.62487 -22.96601 -21.15975 -20.18621 -19.29122 -18.52216 -18.17683 -17.46673 -17.23106 -16.87463 -16.52264 -15.98063 -15.57079 -14.93322 -14.77055 -14.65049 -14.35331 -14.13106 -13.97740 -13.86355 -13.70684 -13.40198 -12.99574 -12.84129 -12.74125 -12.69098 -12.37568 -12.00836 -11.97577 -11.58349 -11.41280 -11.37188 -11.12782 -11.02426 -10.76035 -10.25113 -9.84092 -8.62625 -8.59584 -6.10046 1.21663 1.34484 1.39575 1.62184 1.82849 1.93539 2.18496 2.58417 2.84449 2.88711 3.27138 3.60646 3.74161 3.82696 3.88301 3.95130 4.14134 4.29541 4.37701 4.40691 4.48007 4.51321 4.54995 4.59140 4.73902 4.83013 4.85582 4.93350 5.00571 5.06246 5.08753 5.14270 5.23392 5.35722 5.61745 5.80911 6.00862 6.14472 6.20760 6.28971 6.71147 6.94163 7.37029 7.74483 8.52830 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.008612 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.439341 B = 3250.644105 C = 3802.009914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.228 4.228 3 C 0.213 3.787 4 N -0.461 5.461 5 C -0.354 4.354 6 H 0.078 0.922 7 C 0.052 3.948 8 N -0.869 5.869 9 Si 0.890 3.110 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.246 1.246 13 C 0.488 3.512 14 O -0.593 6.593 15 C 0.056 3.944 16 H 0.089 0.911 17 C 0.048 3.952 18 N -0.520 5.520 19 C 0.013 3.987 20 C 0.012 3.988 21 N -0.515 5.515 22 C 0.003 3.997 23 C 0.042 3.958 24 H 0.108 0.892 25 C -0.140 4.140 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.282 0.718 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.646 3.381 -8.845 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.229 4.229 3 C 0.091 3.909 4 N -0.181 5.181 5 C -0.480 4.480 6 H 0.096 0.904 7 C -0.156 4.156 8 N -0.502 5.502 9 Si 0.713 3.287 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.170 1.170 13 C 0.278 3.722 14 O -0.478 6.478 15 C -0.057 4.057 16 H 0.107 0.893 17 C -0.083 4.083 18 N -0.242 5.242 19 C -0.117 4.117 20 C -0.117 4.117 21 N -0.236 5.236 22 C -0.126 4.126 23 C -0.068 4.068 24 H 0.126 0.874 25 C -0.198 4.198 26 H 0.271 0.729 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.510 3.112 -9.126 10.645 hybrid contribution 0.080 -0.641 0.655 0.919 sum 4.590 2.472 -8.471 9.947 Atomic orbital electron populations 1.25687 0.96605 0.98271 1.00671 1.24108 0.95812 1.02157 1.00808 1.18711 0.84434 0.85928 1.01869 1.43659 1.56869 1.11574 1.06047 1.18648 1.42640 0.97615 0.89088 0.90421 1.25693 0.96789 0.98994 0.94094 1.69989 1.37973 1.41339 1.00943 0.86797 0.81634 0.80462 0.79848 1.19289 1.20134 1.16960 1.20539 0.80605 0.88333 0.82690 1.90452 1.54089 1.72535 1.30717 1.21828 0.98287 0.93958 0.91648 0.89290 1.22532 0.88671 1.02206 0.94872 1.64021 1.47101 1.03226 1.09824 1.22988 0.96842 0.89410 1.02412 1.23024 0.95393 0.89833 1.03491 1.63635 1.49058 1.03182 1.07760 1.23385 0.92199 1.00160 0.96882 1.22570 0.97398 0.94266 0.92590 0.87430 1.21859 1.01195 0.95274 1.01458 0.72926 0.89563 0.89358 0.90834 0.90199 0.90867 0.89695 0.88015 0.90208 0.88152 0.89411 0.89272 0.95404 0.90762 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.21 19.25 74.32 1.43 -5.78 16 2 C -0.23 -10.01 13.64 31.12 0.42 -9.58 16 3 C 0.21 9.65 4.01 84.57 0.34 9.99 16 4 N -0.46 -21.92 2.05 -645.41 -1.32 -23.24 16 5 C -0.35 -17.79 7.27 84.04 0.61 -17.17 16 6 H 0.08 4.20 7.25 -2.91 -0.02 4.18 16 7 C 0.05 2.63 5.03 84.93 0.43 3.05 16 8 N -0.87 -46.09 13.96 21.66 0.30 -45.79 16 9 Si 0.89 38.44 26.28 68.60 1.80 40.24 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.25 -10.18 5.57 99.48 0.55 -9.63 16 13 C 0.49 22.51 5.65 87.66 0.49 23.01 16 14 O -0.59 -29.23 13.50 -3.08 -0.04 -29.27 16 15 C 0.06 2.24 2.10 44.17 0.09 2.34 16 16 H 0.09 3.72 7.61 -2.39 -0.02 3.70 16 17 C 0.05 1.79 4.17 86.31 0.36 2.15 16 18 N -0.52 -16.19 5.24 -865.45 -4.54 -20.73 16 19 C 0.01 0.32 6.13 86.29 0.53 0.85 16 20 C 0.01 0.31 6.12 86.29 0.53 0.84 16 21 N -0.51 -18.03 5.05 -869.81 -4.40 -22.43 16 22 C 0.00 0.10 5.38 86.48 0.47 0.57 16 23 C 0.04 1.23 3.05 45.09 0.14 1.36 16 24 H 0.11 2.58 8.14 -2.39 -0.02 2.57 16 25 C -0.14 -4.39 8.65 71.98 0.62 -3.76 16 26 H 0.25 6.55 7.80 -4.41 -0.03 6.52 16 27 H 0.09 3.80 7.63 -2.39 -0.02 3.78 16 28 H 0.09 3.95 4.43 -2.39 -0.01 3.94 16 29 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 31 H 0.07 3.12 4.76 -2.39 -0.01 3.11 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.09 3.48 4.73 -2.39 -0.01 3.47 16 37 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.03 1.05 5.54 -2.39 -0.01 1.03 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -60.87 307.66 -0.84 -61.72 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.88 Total: 31.65 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 6.46 Total: 7.85 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -9.95 Total: -112.19 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.04 Total: -29.27 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.80 Total: 40.24 kcal Total: -60.87 -0.84 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.202 kcal (2) G-P(sol) polarization free energy of solvation -60.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds