Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46696 * 123.03904 * 3 2 1 5 5 C 1.37099 * 120.00617 * 85.83220 * 4 3 2 6 6 H 1.07994 * 120.00224 * 177.41551 * 5 4 3 7 7 C 1.38950 * 119.99309 * 357.41721 * 5 4 3 8 8 N 1.31417 * 120.00229 * 330.94446 * 7 5 4 9 9 Si 1.86802 * 119.99679 * 150.94627 * 7 5 4 10 10 H 1.48500 * 109.47220 * 84.99808 * 9 7 5 11 11 H 1.48500 * 109.47189 * 324.99233 * 9 7 5 12 12 H 1.48504 * 109.46827 * 204.99482 * 9 7 5 13 13 C 1.34786 * 119.99736 * 265.82985 * 4 3 2 14 14 O 1.21290 * 120.00051 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99861 * 359.97438 * 13 4 3 16 16 H 1.08997 * 109.58645 * 306.42417 * 15 13 4 17 17 C 1.53239 * 109.58002 * 66.83932 * 15 13 4 18 18 N 1.47271 * 108.80540 * 119.80536 * 17 15 13 19 19 C 1.47316 * 110.15625 * 299.18080 * 18 17 15 20 20 C 1.53210 * 108.80125 * 60.80587 * 19 18 17 21 21 N 1.47269 * 109.57907 * 186.15342 * 15 13 4 22 22 C 1.47322 * 110.15509 * 179.38795 * 21 15 13 23 23 C 1.47315 * 110.15645 * 60.80081 * 18 17 15 24 24 H 1.08997 * 109.58087 * 179.38612 * 23 18 17 25 25 C 1.52999 * 109.57962 * 58.98068 * 23 18 17 26 26 H 4.40630 * 5.51449 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47362 * 3.03760 * 3 2 1 28 28 H 1.08995 * 109.47032 * 243.03371 * 3 2 1 29 29 H 0.96994 * 119.99624 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.57841 * 239.60310 * 17 15 13 31 31 H 1.09000 * 109.58214 * 0.02562 * 17 15 13 32 32 H 1.09005 * 109.58126 * 301.00984 * 19 18 17 33 33 H 1.08997 * 109.57805 * 180.59978 * 19 18 17 34 34 H 1.09004 * 109.57890 * 240.21214 * 20 19 18 35 35 H 1.09003 * 109.69254 * 119.87640 * 20 19 18 36 36 H 1.09002 * 109.58175 * 180.59823 * 22 21 15 37 37 H 1.09002 * 109.58228 * 301.01265 * 22 21 15 38 38 H 1.08996 * 109.47287 * 60.00152 * 25 23 18 39 39 H 1.09001 * 109.46614 * 179.97438 * 25 23 18 40 40 H 1.09002 * 109.47368 * 299.99910 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7539 -1.1579 5 6 3.2804 2.1148 -1.0783 6 1 3.6794 2.6649 -1.9176 7 6 2.9155 2.7860 0.0823 8 7 1.9582 2.3074 0.8448 9 14 3.7858 4.3688 0.5586 10 1 3.1449 5.5144 -0.1357 11 1 5.2147 4.2865 0.1627 12 1 3.6896 4.5637 2.0277 13 6 3.4388 0.1091 -2.3015 14 8 3.8432 0.7326 -3.2601 15 6 3.2784 -1.3868 -2.3889 16 1 3.8198 -1.8607 -1.5702 17 6 1.7920 -1.7497 -2.3035 18 7 1.4037 -2.4540 -3.5372 19 6 1.6132 -1.5828 -4.7065 20 6 3.0992 -1.2197 -4.7919 21 7 3.8108 -1.8659 -3.6756 22 6 3.6735 -3.3298 -3.7682 23 6 2.1875 -3.6928 -3.6826 24 1 1.8852 -4.2117 -4.5923 25 6 1.9492 -4.5956 -2.4706 26 1 -1.0501 0.0000 0.0003 27 1 3.0098 -1.0253 -0.0545 28 1 3.0091 0.4668 0.9159 29 1 1.7033 2.7762 1.6548 30 1 1.6232 -2.3983 -1.4440 31 1 1.1994 -0.8407 -2.2001 32 1 1.0209 -0.6744 -4.5960 33 1 1.3131 -2.1091 -5.6126 34 1 3.2155 -0.1382 -4.7220 35 1 3.5093 -1.5708 -5.7388 36 1 4.0798 -3.6754 -4.7188 37 1 4.2124 -3.8001 -2.9457 38 1 0.8897 -4.8429 -2.4045 39 1 2.5296 -5.5117 -2.5804 40 1 2.2582 -4.0757 -1.5638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347544398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = 85.916857 kcal Electronic energy + Delta-G solvation = -23356.513455 eV Core-core repulsion = 20174.913499 eV Total energy + Delta-G solvation = -3181.599956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.16927 -38.23208 -35.36044 -33.09584 -32.44993 -32.11511 -31.34449 -30.62301 -27.07383 -26.43384 -25.06877 -23.52433 -23.15200 -21.88725 -19.36738 -18.11596 -17.61397 -17.21444 -16.51573 -16.05908 -15.63863 -15.31057 -14.38313 -14.25968 -13.98110 -13.55084 -13.24736 -12.85081 -12.83199 -12.63914 -12.33642 -12.23416 -12.07100 -11.82337 -11.75161 -11.36537 -11.19199 -10.99139 -10.86377 -10.58066 -10.37635 -10.25571 -10.08658 -9.48364 -9.30336 -9.23681 -8.79510 -8.26789 -8.00369 -7.29407 -6.41532 -3.81119 3.12242 3.24236 3.30689 3.61040 3.81088 4.00780 4.05620 4.14892 4.39714 4.74543 4.85838 4.93694 5.02933 5.24539 5.28579 5.38179 5.47371 5.53324 5.58606 5.61595 5.71757 5.80496 5.82589 5.93306 6.01903 6.10955 6.14985 6.19202 6.24858 6.35399 6.61659 6.74931 6.92579 7.02431 7.05506 7.41897 7.50153 7.52692 7.99520 8.39205 8.82416 9.10307 9.32502 9.87681 10.57554 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.006514 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.331186 B = 4297.098576 C = 4848.423749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.107 4.107 3 C 0.228 3.772 4 N -0.435 5.435 5 C -0.320 4.320 6 H 0.108 0.892 7 C 0.036 3.964 8 N -0.852 5.852 9 Si 0.913 3.087 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.455 3.545 14 O -0.568 6.568 15 C 0.034 3.966 16 H 0.093 0.907 17 C 0.021 3.979 18 N -0.511 5.511 19 C 0.013 3.987 20 C -0.009 4.009 21 N -0.491 5.491 22 C 0.014 3.986 23 C 0.034 3.966 24 H 0.082 0.918 25 C -0.141 4.141 26 H 0.198 0.802 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.269 0.731 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.131 0.869 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 -11.415 -2.846 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.108 4.108 3 C 0.104 3.896 4 N -0.153 5.153 5 C -0.446 4.446 6 H 0.126 0.874 7 C -0.169 4.169 8 N -0.489 5.489 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.244 3.756 14 O -0.453 6.453 15 C -0.080 4.080 16 H 0.111 0.889 17 C -0.109 4.109 18 N -0.233 5.233 19 C -0.117 4.117 20 C -0.138 4.138 21 N -0.212 5.212 22 C -0.116 4.116 23 C -0.076 4.076 24 H 0.100 0.900 25 C -0.199 4.199 26 H 0.215 0.785 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.812 -11.022 -3.122 11.484 hybrid contribution -0.064 0.772 0.489 0.916 sum -0.876 -10.250 -2.633 10.619 Atomic orbital electron populations 1.24224 0.95311 1.05513 1.02724 1.22933 0.94079 0.95863 0.97967 1.18438 0.84657 0.93913 0.92552 1.43748 1.55295 1.07136 1.09151 1.19617 1.41758 0.81572 1.01688 0.87414 1.25194 0.95220 0.99655 0.96784 1.70193 1.22658 1.40761 1.15277 0.86171 0.80685 0.81717 0.77508 1.20353 1.19415 1.20845 1.19519 0.84976 0.87742 0.83412 1.90347 1.51176 1.68009 1.35736 1.22234 0.96071 0.96332 0.93400 0.88942 1.23102 0.94623 1.00227 0.92951 1.63970 1.51855 1.04808 1.02657 1.22878 0.97818 0.97560 0.93424 1.23437 0.91602 1.05461 0.93334 1.63604 1.52617 1.03393 1.01579 1.23044 0.95851 0.89868 1.02873 1.22445 0.93458 0.91999 0.99739 0.89981 1.21880 1.02168 0.98489 0.97330 0.78519 0.92205 0.87171 0.92041 0.89842 0.88739 0.90359 0.91039 0.85161 0.91527 0.90488 0.90409 0.92013 0.92232 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.23 18.91 29.55 0.56 -4.68 16 2 C -0.11 -2.30 8.78 -37.12 -0.33 -2.63 16 3 C 0.23 4.89 4.78 -6.83 -0.03 4.86 16 4 N -0.44 -10.66 2.59 -117.94 -0.31 -10.96 16 5 C -0.32 -8.61 9.41 -14.93 -0.14 -8.75 16 6 H 0.11 3.09 7.31 -52.49 -0.38 2.71 16 7 C 0.04 0.92 4.89 -17.47 -0.09 0.84 16 8 N -0.85 -21.53 9.12 55.50 0.51 -21.03 16 9 Si 0.91 20.08 29.64 -169.99 -5.04 15.04 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.46 10.77 6.46 -10.98 -0.07 10.70 16 14 O -0.57 -15.13 13.06 5.55 0.07 -15.05 16 15 C 0.03 0.63 2.01 -68.54 -0.14 0.50 16 16 H 0.09 1.64 7.07 -51.93 -0.37 1.28 16 17 C 0.02 0.37 3.50 -3.50 -0.01 0.36 16 18 N -0.51 -8.18 5.24 -225.24 -1.18 -9.36 16 19 C 0.01 0.21 6.13 -3.49 -0.02 0.19 16 20 C -0.01 -0.17 5.70 -3.49 -0.02 -0.19 16 21 N -0.49 -8.80 5.10 -226.61 -1.15 -9.96 16 22 C 0.01 0.19 5.80 -3.48 -0.02 0.17 16 23 C 0.03 0.45 3.05 -67.38 -0.21 0.25 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 C -0.14 -1.61 8.63 37.16 0.32 -1.29 16 26 H 0.20 3.32 7.80 -54.09 -0.42 2.90 16 27 H 0.06 1.09 5.91 -51.93 -0.31 0.78 16 28 H 0.11 2.51 6.32 -51.93 -0.33 2.18 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.08 1.36 6.15 -51.93 -0.32 1.05 16 31 H 0.09 1.96 5.56 -51.93 -0.29 1.67 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.13 2.81 4.99 -51.93 -0.26 2.56 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 LS Contribution 304.47 15.07 4.59 4.59 Total: -1.00 -29.22 304.47 -8.20 -37.42 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.49 Total: 8.97 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -0.19 Total: 0.34 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -2.14 Total: -51.30 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.07 Total: -15.05 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.04 Total: 15.04 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.22 -8.20 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.333 kcal (2) G-P(sol) polarization free energy of solvation -29.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds