Wall clock time and date at job start Mon Mar 30 2020 02:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46696 * 123.03904 * 3 2 1 5 5 C 1.37099 * 120.00617 * 85.83220 * 4 3 2 6 6 H 1.07994 * 120.00224 * 177.41551 * 5 4 3 7 7 C 1.38950 * 119.99309 * 357.41721 * 5 4 3 8 8 N 1.31417 * 120.00229 * 330.94446 * 7 5 4 9 9 Si 1.86802 * 119.99679 * 150.94627 * 7 5 4 10 10 H 1.48500 * 109.47220 * 84.99808 * 9 7 5 11 11 H 1.48500 * 109.47189 * 324.99233 * 9 7 5 12 12 H 1.48504 * 109.46827 * 204.99482 * 9 7 5 13 13 C 1.34786 * 119.99736 * 265.82985 * 4 3 2 14 14 O 1.21290 * 120.00051 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99861 * 359.97438 * 13 4 3 16 16 H 1.08997 * 109.58645 * 306.42417 * 15 13 4 17 17 C 1.53239 * 109.58002 * 66.83932 * 15 13 4 18 18 N 1.47271 * 108.80540 * 119.80536 * 17 15 13 19 19 C 1.47316 * 110.15625 * 299.18080 * 18 17 15 20 20 C 1.53210 * 108.80125 * 60.80587 * 19 18 17 21 21 N 1.47269 * 109.57907 * 186.15342 * 15 13 4 22 22 C 1.47322 * 110.15509 * 179.38795 * 21 15 13 23 23 C 1.47315 * 110.15645 * 60.80081 * 18 17 15 24 24 H 1.08997 * 109.58087 * 179.38612 * 23 18 17 25 25 C 1.52999 * 109.57962 * 58.98068 * 23 18 17 26 26 H 4.40630 * 5.51449 * 180.02562 * 4 1 2 27 27 H 1.08994 * 109.47362 * 3.03760 * 3 2 1 28 28 H 1.08995 * 109.47032 * 243.03371 * 3 2 1 29 29 H 0.96994 * 119.99624 * 180.02562 * 8 7 5 30 30 H 1.08994 * 109.57841 * 239.60310 * 17 15 13 31 31 H 1.09000 * 109.58214 * 0.02562 * 17 15 13 32 32 H 1.09005 * 109.58126 * 301.00984 * 19 18 17 33 33 H 1.08997 * 109.57805 * 180.59978 * 19 18 17 34 34 H 1.09004 * 109.57890 * 240.21214 * 20 19 18 35 35 H 1.09003 * 109.69254 * 119.87640 * 20 19 18 36 36 H 1.09002 * 109.58175 * 180.59823 * 22 21 15 37 37 H 1.09002 * 109.58228 * 301.01265 * 22 21 15 38 38 H 1.08996 * 109.47287 * 60.00152 * 25 23 18 39 39 H 1.09001 * 109.46614 * 179.97438 * 25 23 18 40 40 H 1.09002 * 109.47368 * 299.99910 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.7539 -1.1579 5 6 3.2804 2.1148 -1.0783 6 1 3.6794 2.6649 -1.9176 7 6 2.9155 2.7860 0.0823 8 7 1.9582 2.3074 0.8448 9 14 3.7858 4.3688 0.5586 10 1 3.1449 5.5144 -0.1357 11 1 5.2147 4.2865 0.1627 12 1 3.6896 4.5637 2.0277 13 6 3.4388 0.1091 -2.3015 14 8 3.8432 0.7326 -3.2601 15 6 3.2784 -1.3868 -2.3889 16 1 3.8198 -1.8607 -1.5702 17 6 1.7920 -1.7497 -2.3035 18 7 1.4037 -2.4540 -3.5372 19 6 1.6132 -1.5828 -4.7065 20 6 3.0992 -1.2197 -4.7919 21 7 3.8108 -1.8659 -3.6756 22 6 3.6735 -3.3298 -3.7682 23 6 2.1875 -3.6928 -3.6826 24 1 1.8852 -4.2117 -4.5923 25 6 1.9492 -4.5956 -2.4706 26 1 -1.0501 0.0000 0.0003 27 1 3.0098 -1.0253 -0.0545 28 1 3.0091 0.4668 0.9159 29 1 1.7033 2.7762 1.6548 30 1 1.6232 -2.3983 -1.4440 31 1 1.1994 -0.8407 -2.2001 32 1 1.0209 -0.6744 -4.5960 33 1 1.3131 -2.1091 -5.6126 34 1 3.2155 -0.1382 -4.7220 35 1 3.5093 -1.5708 -5.7388 36 1 4.0798 -3.6754 -4.7188 37 1 4.2124 -3.8001 -2.9457 38 1 0.8897 -4.8429 -2.4045 39 1 2.5296 -5.5117 -2.5804 40 1 2.2582 -4.0757 -1.5638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347544398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:32 Heat of formation + Delta-G solvation = 64.310894 kcal Electronic energy + Delta-G solvation = -23357.450360 eV Core-core repulsion = 20174.913499 eV Total energy + Delta-G solvation = -3182.536861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.54628 -39.95774 -37.19873 -34.39126 -34.22634 -33.34717 -33.04982 -32.17492 -28.48616 -27.92588 -26.80747 -24.82039 -24.68958 -23.12429 -21.02162 -19.81750 -19.07117 -18.68927 -18.21971 -17.41098 -17.16476 -16.85932 -16.07244 -15.99895 -15.64869 -14.78594 -14.67317 -14.37896 -14.17072 -14.07147 -13.90569 -13.62220 -13.59266 -13.39273 -12.91872 -12.85580 -12.78012 -12.47908 -12.30415 -12.16535 -12.11668 -11.53956 -11.39716 -11.13938 -10.94364 -10.77769 -10.50001 -10.05517 -9.91655 -8.64406 -8.35792 -5.83643 1.33254 1.42351 1.53600 1.86177 2.11579 2.34381 2.43050 2.67927 2.94071 3.04788 3.27657 3.69436 3.78969 3.80426 3.92240 3.96424 4.10060 4.18678 4.32903 4.43711 4.50588 4.56495 4.62584 4.69672 4.78851 4.86646 4.93419 4.95394 4.99647 5.08536 5.18588 5.33979 5.44471 5.48698 5.58501 5.79656 5.98610 6.11369 6.27451 6.45646 7.15549 7.19543 7.42728 8.00722 8.60427 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.006514 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.331186 B = 4297.098576 C = 4848.423749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.138 4.138 3 C 0.232 3.768 4 N -0.446 5.446 5 C -0.359 4.359 6 H 0.074 0.926 7 C 0.013 3.987 8 N -0.857 5.857 9 Si 0.973 3.027 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.267 1.267 13 C 0.444 3.556 14 O -0.610 6.610 15 C 0.045 3.955 16 H 0.108 0.892 17 C 0.036 3.964 18 N -0.514 5.514 19 C 0.019 3.981 20 C -0.005 4.005 21 N -0.511 5.511 22 C 0.015 3.985 23 C 0.035 3.965 24 H 0.101 0.899 25 C -0.137 4.137 26 H 0.227 0.773 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -13.744 -2.377 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.139 4.139 3 C 0.109 3.891 4 N -0.164 5.164 5 C -0.486 4.486 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.493 5.493 9 Si 0.797 3.203 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.191 1.191 13 C 0.234 3.766 14 O -0.496 6.496 15 C -0.069 4.069 16 H 0.125 0.875 17 C -0.094 4.094 18 N -0.235 5.235 19 C -0.111 4.111 20 C -0.135 4.135 21 N -0.233 5.233 22 C -0.114 4.114 23 C -0.075 4.075 24 H 0.120 0.880 25 C -0.195 4.195 26 H 0.244 0.756 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.306 -13.382 -2.630 13.700 hybrid contribution 0.054 1.489 0.287 1.517 sum -1.252 -11.893 -2.343 12.186 Atomic orbital electron populations 1.24990 0.96209 1.04192 1.01353 1.23111 0.94543 0.97084 0.99202 1.18438 0.85033 0.94907 0.90689 1.43903 1.55525 1.06651 1.10341 1.19440 1.44068 0.83186 1.01909 0.90767 1.25786 0.95132 1.02238 0.96051 1.70260 1.22310 1.41567 1.15150 0.85284 0.79008 0.78187 0.77781 1.20570 1.20086 1.19090 1.20456 0.83645 0.89929 0.82565 1.90340 1.52616 1.69609 1.37060 1.22099 0.97424 0.92616 0.94761 0.87451 1.22862 0.92773 0.99244 0.94560 1.64003 1.52491 1.05410 1.01637 1.22805 0.96253 0.97171 0.94883 1.23227 0.92989 1.02888 0.94357 1.63555 1.52981 1.05963 1.00761 1.23192 0.96756 0.86940 1.04523 1.22613 0.92384 0.90786 1.01687 0.88048 1.21875 1.02751 0.98985 0.95874 0.75631 0.89061 0.88813 0.91592 0.88143 0.92261 0.93035 0.88081 0.89690 0.89485 0.88704 0.89017 0.91914 0.89594 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.81 18.91 74.32 1.41 -8.40 16 2 C -0.14 -5.92 8.78 31.13 0.27 -5.64 16 3 C 0.23 10.04 4.78 84.58 0.40 10.44 16 4 N -0.45 -22.67 2.59 -645.42 -1.67 -24.34 16 5 C -0.36 -20.25 9.41 84.04 0.79 -19.46 16 6 H 0.07 4.58 7.31 -2.91 -0.02 4.56 16 7 C 0.01 0.66 4.89 84.93 0.41 1.07 16 8 N -0.86 -43.43 9.12 21.66 0.20 -43.23 16 9 Si 0.97 41.86 29.64 68.60 2.03 43.89 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 13 C 0.44 21.85 6.46 87.65 0.57 22.42 16 14 O -0.61 -34.45 13.06 -3.06 -0.04 -34.49 16 15 C 0.04 1.68 2.01 44.18 0.09 1.77 16 16 H 0.11 3.66 7.07 -2.39 -0.02 3.64 16 17 C 0.04 1.24 3.50 86.31 0.30 1.54 16 18 N -0.51 -15.42 5.24 -866.52 -4.54 -19.96 16 19 C 0.02 0.60 6.13 86.29 0.53 1.13 16 20 C -0.01 -0.19 5.70 86.29 0.49 0.31 16 21 N -0.51 -17.77 5.10 -870.86 -4.44 -22.21 16 22 C 0.02 0.37 5.80 86.29 0.50 0.87 16 23 C 0.03 0.80 3.05 44.91 0.14 0.93 16 24 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 25 C -0.14 -2.57 8.63 71.98 0.62 -1.95 16 26 H 0.23 7.14 7.80 -4.41 -0.03 7.10 16 27 H 0.09 3.25 5.91 -2.39 -0.01 3.24 16 28 H 0.09 4.32 6.32 -2.39 -0.02 4.31 16 29 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 30 H 0.10 3.08 6.15 -2.39 -0.01 3.06 16 31 H 0.06 2.48 5.56 -2.39 -0.01 2.47 16 32 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.09 3.88 4.99 -2.45 -0.01 3.86 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 2.02 7.61 -2.39 -0.02 2.00 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.03 6.32 -2.39 -0.02 1.02 16 Total: -1.00 -66.17 304.47 -0.90 -67.07 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 1.04 Total: 28.24 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.53 Total: 5.04 kcal Atomic # 7 Polarization: -99.29 SS G_CDS: -10.46 Total: -109.75 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.04 Total: -34.49 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -66.17 -0.90 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347544398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.385 kcal (2) G-P(sol) polarization free energy of solvation -66.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds