Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46744 * 2 1 4 4 C 1.53001 * 109.47003 * 240.00860 * 2 1 3 5 5 C 1.50701 * 109.47409 * 64.99194 * 4 2 1 6 6 O 1.21295 * 119.99754 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99907 * 179.97438 * 5 4 2 8 8 C 1.37099 * 119.99703 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99821 * 224.28685 * 8 7 5 10 10 C 1.38945 * 120.00135 * 44.29503 * 8 7 5 11 11 N 1.31415 * 120.00211 * 18.20149 * 10 8 7 12 12 Si 1.86807 * 119.99965 * 198.20707 * 10 8 7 13 13 H 1.48500 * 109.47095 * 59.99501 * 12 10 8 14 14 H 1.48496 * 109.47018 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47078 * 299.99510 * 12 10 8 16 16 C 1.46505 * 120.00260 * 0.02562 * 7 5 4 17 17 C 1.52998 * 117.49856 * 183.21916 * 16 7 5 18 18 C 1.52994 * 117.49701 * 114.59716 * 16 7 5 19 19 C 1.50698 * 109.47319 * 120.00392 * 2 1 3 20 20 C 1.39865 * 126.03818 * 60.02844 * 19 2 1 21 21 N 1.30839 * 108.19976 * 179.97438 * 20 19 2 22 22 N 1.40082 * 108.20629 * 359.97438 * 21 20 19 23 23 C 1.46505 * 126.03600 * 179.74151 * 22 21 20 24 24 C 1.34938 * 107.92512 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47084 * 299.99157 * 1 2 3 27 27 H 1.08995 * 109.47626 * 59.99642 * 1 2 3 28 28 H 1.08991 * 109.47157 * 184.99922 * 4 2 1 29 29 H 1.09005 * 109.46653 * 304.99815 * 4 2 1 30 30 H 0.96997 * 120.00188 * 174.92782 * 11 10 8 31 31 H 1.08999 * 115.54612 * 328.92933 * 16 7 5 32 32 H 1.08997 * 117.49922 * 0.02562 * 17 16 7 33 33 H 1.09004 * 117.49402 * 145.02073 * 17 16 7 34 34 H 1.09001 * 117.49648 * 214.97730 * 18 16 7 35 35 H 1.09003 * 117.50107 * 359.97438 * 18 16 7 36 36 H 1.08000 * 125.90238 * 359.94935 * 20 19 2 37 37 H 1.08998 * 109.47254 * 90.02861 * 23 22 21 38 38 H 1.09000 * 109.46765 * 210.03115 * 23 22 21 39 39 H 1.09003 * 109.47129 * 330.02315 * 23 22 21 40 40 H 1.08002 * 126.12869 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6411 0.0573 -2.4766 6 8 1.0114 1.0877 -2.3632 7 7 1.9851 -0.3911 -3.7002 8 6 1.6227 0.3173 -4.8166 9 1 1.2215 -0.1983 -5.6766 10 6 1.7718 1.6985 -4.8418 11 7 2.5677 2.2894 -3.9790 12 14 0.8407 2.7157 -6.1020 13 1 -0.6193 2.5156 -5.9185 14 1 1.1699 4.1522 -5.9195 15 1 1.2310 2.2878 -7.4695 16 6 2.7463 -1.6353 -3.8372 17 6 3.1713 -2.0519 -5.2467 18 6 2.0560 -2.8133 -4.5276 19 6 2.0324 -0.7105 1.2304 20 6 1.7740 -2.0410 1.5754 21 7 2.3784 -2.2943 2.7078 22 7 3.0420 -1.1314 3.1195 23 6 3.8374 -0.9792 4.3403 24 6 2.8139 -0.1742 2.1961 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1262 -0.7993 -1.2058 29 1 1.6053 -1.7196 -1.2953 30 1 2.7292 3.2437 -4.0428 31 1 3.4286 -1.8616 -3.0179 32 1 2.8850 -1.4000 -6.0720 33 1 4.1336 -2.5523 -5.3549 34 1 2.2845 -3.8147 -4.1627 35 1 1.0353 -2.6627 -4.8794 36 1 1.1781 -2.7388 1.0057 37 1 4.8752 -1.2398 4.1326 38 1 3.7838 0.0544 4.6824 39 1 3.4450 -1.6388 5.1143 40 1 3.1879 0.8387 2.2231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518824165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = 78.825816 kcal Electronic energy + Delta-G solvation = -21808.619082 eV Core-core repulsion = 18626.711635 eV Total energy + Delta-G solvation = -3181.907447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.05766 -38.58452 -36.30850 -34.63007 -32.83794 -32.32855 -30.85467 -29.39237 -27.36634 -26.36501 -24.56679 -22.24788 -21.62161 -21.08704 -20.85754 -19.68496 -18.62782 -16.60812 -16.13983 -15.94682 -15.34339 -14.71825 -14.60169 -14.24017 -13.88397 -13.79105 -13.51348 -12.94825 -12.85007 -12.71628 -12.33250 -12.23163 -12.04434 -11.45358 -11.14740 -11.01908 -10.88162 -10.78025 -10.65841 -10.41441 -10.27088 -10.05131 -9.97826 -9.86312 -9.65662 -9.26959 -8.62306 -8.14376 -7.81757 -6.91031 -6.03980 -3.78682 2.03109 2.63046 3.02450 3.34193 3.40893 3.44624 4.23850 4.34610 4.54356 4.85919 4.93064 5.02231 5.03442 5.21163 5.26601 5.35066 5.53917 5.62853 5.67309 5.80691 5.84675 5.90649 5.98433 6.15995 6.19969 6.24527 6.28372 6.36916 6.50733 6.60888 6.68392 6.80370 6.86578 6.99010 7.00652 7.13115 7.16760 7.68538 7.84376 8.35822 9.16415 9.26818 9.77010 10.42167 11.05237 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004864 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.631340 B = 5754.857532 C = 6451.017632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.006 3.994 3 H 0.079 0.921 4 C -0.121 4.121 5 C 0.486 3.514 6 O -0.530 6.530 7 N -0.432 5.432 8 C -0.348 4.348 9 H 0.074 0.926 10 C 0.075 3.925 11 N -0.835 5.835 12 Si 0.911 3.089 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.279 1.279 16 C 0.078 3.922 17 C -0.176 4.176 18 C -0.208 4.208 19 C -0.213 4.213 20 C 0.055 3.945 21 N -0.306 5.306 22 N -0.385 5.385 23 C 0.106 3.894 24 C 0.048 3.952 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.263 0.737 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.180 0.820 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -6.795 10.916 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 H 0.098 0.902 4 C -0.162 4.162 5 C 0.274 3.726 6 O -0.408 6.408 7 N -0.153 5.153 8 C -0.475 4.475 9 H 0.092 0.908 10 C -0.135 4.135 11 N -0.469 5.469 12 Si 0.738 3.262 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.205 1.205 16 C -0.028 4.028 17 C -0.213 4.213 18 C -0.247 4.247 19 C -0.224 4.224 20 C -0.131 4.131 21 N -0.128 5.128 22 N -0.168 5.168 23 C -0.036 4.036 24 C -0.097 4.097 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.197 0.803 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.733 -6.887 12.139 14.222 hybrid contribution -0.239 1.053 -1.221 1.630 sum 2.495 -5.834 10.918 12.627 Atomic orbital electron populations 1.21878 0.94614 1.00779 1.02565 1.19128 0.95674 0.98310 0.88295 0.90220 1.21623 1.01068 0.99445 0.94090 1.19825 0.82430 0.86690 0.83619 1.90476 1.41138 1.24075 1.85155 1.42804 1.47661 1.19311 1.05502 1.18777 1.44412 0.89062 0.95282 0.90830 1.25198 0.94621 0.97623 0.96041 1.69818 1.31542 1.10787 1.34707 0.86309 0.80844 0.78837 0.80190 1.20000 1.21294 1.20519 1.21677 0.97612 0.88056 0.95498 1.23048 0.97655 1.03122 0.97518 1.23299 0.98220 0.96202 1.07007 1.20337 1.06528 0.95098 1.00443 1.23738 0.99093 0.96345 0.93898 1.77269 1.13837 1.06134 1.15550 1.48366 1.40844 1.08529 1.19062 1.21758 0.94609 1.03214 0.84036 1.22355 1.00714 0.95651 0.90975 0.94002 0.94108 0.89813 0.91189 0.91023 0.92709 0.88102 0.87579 0.89970 0.89916 0.89180 0.80318 0.91102 0.89771 0.89702 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.82 37.16 0.33 -2.15 16 2 C 0.01 0.11 2.40 -91.77 -0.22 -0.11 16 3 H 0.08 1.56 7.92 -51.93 -0.41 1.15 16 4 C -0.12 -2.33 3.65 -27.88 -0.10 -2.43 16 5 C 0.49 12.01 6.68 -10.99 -0.07 11.94 16 6 O -0.53 -14.93 11.73 5.54 0.07 -14.86 16 7 N -0.43 -10.74 2.83 -107.73 -0.31 -11.05 16 8 C -0.35 -9.50 7.92 -14.93 -0.12 -9.62 16 9 H 0.07 1.96 7.26 -52.49 -0.38 1.58 16 10 C 0.08 2.12 4.39 -17.47 -0.08 2.04 16 11 N -0.84 -24.60 11.74 55.50 0.65 -23.95 16 12 Si 0.91 21.97 29.59 -169.99 -5.03 16.94 16 13 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.08 1.58 5.87 -67.93 -0.40 1.18 16 17 C -0.18 -3.22 9.80 -26.73 -0.26 -3.49 16 18 C -0.21 -3.60 10.36 -26.74 -0.28 -3.88 16 19 C -0.21 -3.27 4.80 -105.06 -0.50 -3.77 16 20 C 0.06 0.82 11.54 -17.37 -0.20 0.62 16 21 N -0.31 -4.63 12.58 30.62 0.39 -4.25 16 22 N -0.38 -5.01 4.01 -68.16 -0.27 -5.28 16 23 C 0.11 0.85 11.47 59.85 0.69 1.54 16 24 C 0.05 0.65 11.38 -17.23 -0.20 0.46 16 25 H 0.04 0.66 8.02 -51.93 -0.42 0.24 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.75 5.95 -51.93 -0.31 1.44 16 28 H 0.07 1.32 7.56 -51.93 -0.39 0.93 16 29 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 30 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 31 H 0.10 1.86 6.96 -51.93 -0.36 1.50 16 32 H 0.11 2.16 6.72 -51.93 -0.35 1.81 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.18 2.28 8.06 -52.49 -0.42 1.85 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -33.75 332.82 -6.89 -40.64 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.98 Total: 4.47 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.41 Total: -7.68 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.46 Total: -44.53 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.07 Total: -14.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.75 -6.89 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.462 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds