Wall clock time and date at job start Mon Mar 30 2020 02:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46744 * 2 1 4 4 C 1.53001 * 109.47003 * 240.00860 * 2 1 3 5 5 C 1.50701 * 109.47409 * 64.99194 * 4 2 1 6 6 O 1.21295 * 119.99754 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99907 * 179.97438 * 5 4 2 8 8 C 1.37099 * 119.99703 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99821 * 224.28685 * 8 7 5 10 10 C 1.38945 * 120.00135 * 44.29503 * 8 7 5 11 11 N 1.31415 * 120.00211 * 18.20149 * 10 8 7 12 12 Si 1.86807 * 119.99965 * 198.20707 * 10 8 7 13 13 H 1.48500 * 109.47095 * 59.99501 * 12 10 8 14 14 H 1.48496 * 109.47018 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47078 * 299.99510 * 12 10 8 16 16 C 1.46505 * 120.00260 * 0.02562 * 7 5 4 17 17 C 1.52998 * 117.49856 * 183.21916 * 16 7 5 18 18 C 1.52994 * 117.49701 * 114.59716 * 16 7 5 19 19 C 1.50698 * 109.47319 * 120.00392 * 2 1 3 20 20 C 1.39865 * 126.03818 * 60.02844 * 19 2 1 21 21 N 1.30839 * 108.19976 * 179.97438 * 20 19 2 22 22 N 1.40082 * 108.20629 * 359.97438 * 21 20 19 23 23 C 1.46505 * 126.03600 * 179.74151 * 22 21 20 24 24 C 1.34938 * 107.92512 * 0.02562 * 22 21 20 25 25 H 1.08999 * 109.47067 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47084 * 299.99157 * 1 2 3 27 27 H 1.08995 * 109.47626 * 59.99642 * 1 2 3 28 28 H 1.08991 * 109.47157 * 184.99922 * 4 2 1 29 29 H 1.09005 * 109.46653 * 304.99815 * 4 2 1 30 30 H 0.96997 * 120.00188 * 174.92782 * 11 10 8 31 31 H 1.08999 * 115.54612 * 328.92933 * 16 7 5 32 32 H 1.08997 * 117.49922 * 0.02562 * 17 16 7 33 33 H 1.09004 * 117.49402 * 145.02073 * 17 16 7 34 34 H 1.09001 * 117.49648 * 214.97730 * 18 16 7 35 35 H 1.09003 * 117.50107 * 359.97438 * 18 16 7 36 36 H 1.08000 * 125.90238 * 359.94935 * 20 19 2 37 37 H 1.08998 * 109.47254 * 90.02861 * 23 22 21 38 38 H 1.09000 * 109.46765 * 210.03115 * 23 22 21 39 39 H 1.09003 * 109.47129 * 330.02315 * 23 22 21 40 40 H 1.08002 * 126.12869 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6411 0.0573 -2.4766 6 8 1.0114 1.0877 -2.3632 7 7 1.9851 -0.3911 -3.7002 8 6 1.6227 0.3173 -4.8166 9 1 1.2215 -0.1983 -5.6766 10 6 1.7718 1.6985 -4.8418 11 7 2.5677 2.2894 -3.9790 12 14 0.8407 2.7157 -6.1020 13 1 -0.6193 2.5156 -5.9185 14 1 1.1699 4.1522 -5.9195 15 1 1.2310 2.2878 -7.4695 16 6 2.7463 -1.6353 -3.8372 17 6 3.1713 -2.0519 -5.2467 18 6 2.0560 -2.8133 -4.5276 19 6 2.0324 -0.7105 1.2304 20 6 1.7740 -2.0410 1.5754 21 7 2.3784 -2.2943 2.7078 22 7 3.0420 -1.1314 3.1195 23 6 3.8374 -0.9792 4.3403 24 6 2.8139 -0.1742 2.1961 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 3.1262 -0.7993 -1.2058 29 1 1.6053 -1.7196 -1.2953 30 1 2.7292 3.2437 -4.0428 31 1 3.4286 -1.8616 -3.0179 32 1 2.8850 -1.4000 -6.0720 33 1 4.1336 -2.5523 -5.3549 34 1 2.2845 -3.8147 -4.1627 35 1 1.0353 -2.6627 -4.8794 36 1 1.1781 -2.7388 1.0057 37 1 4.8752 -1.2398 4.1326 38 1 3.7838 0.0544 4.6824 39 1 3.4450 -1.6388 5.1143 40 1 3.1879 0.8387 2.2231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518824165.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:29 Heat of formation + Delta-G solvation = 58.237825 kcal Electronic energy + Delta-G solvation = -21809.511844 eV Core-core repulsion = 18626.711635 eV Total energy + Delta-G solvation = -3182.800209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.12688 -40.36193 -37.91964 -36.07708 -34.59681 -33.51812 -32.76434 -30.53690 -28.97715 -27.29831 -26.45621 -23.64139 -23.03775 -22.67197 -21.93299 -21.18442 -20.13386 -18.17695 -17.73760 -17.43500 -16.61385 -16.26574 -16.20880 -15.68127 -15.39096 -15.16739 -15.01275 -14.20526 -14.15434 -13.87936 -13.65082 -13.56444 -13.29859 -13.13159 -12.88774 -12.75522 -12.57662 -12.28460 -12.15415 -12.09825 -11.85477 -11.74167 -11.56809 -11.25688 -11.15092 -10.64516 -10.28811 -9.76132 -9.21758 -8.84881 -8.13194 -5.90534 0.99235 1.38378 1.46909 1.50025 1.75593 1.89441 2.33145 2.52495 3.16432 3.21725 3.43685 3.69139 4.02653 4.12092 4.16850 4.24548 4.33058 4.39998 4.43229 4.47919 4.52911 4.68836 4.71722 4.76771 4.87839 4.90832 4.92768 4.93156 5.07064 5.17487 5.28126 5.38881 5.50472 5.54878 5.57234 5.62044 5.80215 6.18915 6.27938 6.78763 7.13039 7.31910 7.82334 8.50382 8.95394 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021825 B = 0.004864 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.631340 B = 5754.857532 C = 6451.017632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.018 3.982 3 H 0.051 0.949 4 C -0.105 4.105 5 C 0.471 3.529 6 O -0.576 6.576 7 N -0.449 5.449 8 C -0.356 4.356 9 H 0.073 0.927 10 C 0.025 3.975 11 N -0.872 5.872 12 Si 0.966 3.034 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.259 1.259 16 C 0.047 3.953 17 C -0.174 4.174 18 C -0.179 4.179 19 C -0.234 4.234 20 C 0.052 3.948 21 N -0.329 5.329 22 N -0.381 5.381 23 C 0.095 3.905 24 C 0.054 3.946 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.258 0.742 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.194 0.806 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -8.606 11.861 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 H 0.070 0.930 4 C -0.145 4.145 5 C 0.261 3.739 6 O -0.457 6.457 7 N -0.171 5.171 8 C -0.484 4.484 9 H 0.090 0.910 10 C -0.181 4.181 11 N -0.507 5.507 12 Si 0.791 3.209 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.184 1.184 16 C -0.058 4.058 17 C -0.211 4.211 18 C -0.218 4.218 19 C -0.246 4.246 20 C -0.133 4.133 21 N -0.151 5.151 22 N -0.164 5.164 23 C -0.045 4.045 24 C -0.093 4.093 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.098 0.902 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.211 0.789 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.525 -8.750 13.077 16.124 hybrid contribution -0.455 1.549 -1.465 2.180 sum 3.070 -7.201 11.611 14.004 Atomic orbital electron populations 1.21758 0.94798 1.01427 1.01060 1.18870 0.95461 0.96891 0.88981 0.93027 1.21510 1.01328 0.99688 0.91980 1.20780 0.81571 0.86541 0.85037 1.90445 1.42994 1.26175 1.86087 1.43051 1.48298 1.20649 1.05056 1.19012 1.43848 0.89562 0.95935 0.90980 1.25963 0.95319 0.98821 0.97954 1.69930 1.33486 1.10494 1.36815 0.85441 0.78943 0.77324 0.79148 1.20809 1.21376 1.18386 1.21968 0.99182 0.87242 0.97420 1.23090 0.99698 1.02943 0.95386 1.23302 0.97017 0.96856 1.04628 1.20078 1.08510 0.95672 1.00296 1.23951 0.99163 0.96239 0.93969 1.77228 1.14633 1.07391 1.15838 1.48742 1.40200 1.07628 1.19833 1.22163 0.94652 1.05254 0.82459 1.22700 0.99527 0.96565 0.90464 0.92198 0.93068 0.93696 0.90716 0.88721 0.93306 0.86099 0.90207 0.86748 0.85890 0.90755 0.78913 0.89744 0.87141 0.88899 0.79003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 8.82 71.98 0.64 -4.06 16 2 C 0.02 0.64 2.40 -11.54 -0.03 0.62 16 3 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 4 C -0.10 -3.96 3.65 29.85 0.11 -3.85 16 5 C 0.47 23.73 6.68 87.66 0.59 24.31 16 6 O -0.58 -33.76 11.73 -3.08 -0.04 -33.80 16 7 N -0.45 -22.58 2.83 -613.14 -1.74 -24.32 16 8 C -0.36 -19.79 7.92 84.04 0.67 -19.13 16 9 H 0.07 3.91 7.26 -2.91 -0.02 3.89 16 10 C 0.03 1.46 4.39 84.92 0.37 1.83 16 11 N -0.87 -53.09 11.74 21.66 0.25 -52.84 16 12 Si 0.97 46.17 29.59 68.60 2.03 48.20 16 13 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 14 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 15 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 16 C 0.05 1.83 5.87 44.99 0.26 2.10 16 17 C -0.17 -6.04 9.80 30.59 0.30 -5.74 16 18 C -0.18 -5.73 10.36 30.59 0.32 -5.41 16 19 C -0.23 -6.85 4.80 -20.15 -0.10 -6.95 16 20 C 0.05 1.43 11.54 85.23 0.98 2.41 16 21 N -0.33 -9.23 12.58 -57.03 -0.72 -9.95 16 22 N -0.38 -8.97 4.01 -369.56 -1.48 -10.46 16 23 C 0.09 1.24 11.47 127.77 1.47 2.71 16 24 C 0.05 1.36 11.38 83.54 0.95 2.31 16 25 H 0.06 1.84 8.02 -2.39 -0.02 1.82 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.94 5.95 -2.39 -0.01 1.93 16 28 H 0.07 2.75 7.56 -2.39 -0.02 2.73 16 29 H 0.09 3.11 8.11 -2.38 -0.02 3.09 16 30 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 31 H 0.12 4.17 6.96 -2.39 -0.02 4.16 16 32 H 0.08 3.21 6.72 -2.39 -0.02 3.20 16 33 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.19 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.19 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -75.72 332.82 5.86 -69.86 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.02 Total: 22.14 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 6.52 Total: -8.84 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -3.68 Total: -97.56 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.04 Total: -33.80 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -75.72 5.86 -69.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824165.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.097 kcal (2) G-P(sol) polarization free energy of solvation -75.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds