Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47034 * 2 1 4 4 N 1.46500 * 109.47399 * 120.00668 * 2 1 3 5 5 C 1.36934 * 119.99739 * 275.00070 * 4 2 1 6 6 H 1.08004 * 120.00188 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00294 * 179.97438 * 5 4 2 8 8 N 1.31628 * 119.99587 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00462 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99893 * 9 7 5 11 11 H 1.48502 * 109.47031 * 210.00227 * 9 7 5 12 12 H 1.48501 * 109.47102 * 329.99704 * 9 7 5 13 13 C 1.53008 * 109.47034 * 240.00697 * 2 1 3 14 14 H 1.08996 * 110.91293 * 304.74533 * 13 2 1 15 15 C 1.55152 * 111.00304 * 180.84470 * 13 2 1 16 16 C 1.54329 * 102.94182 * 206.41971 * 15 13 2 17 17 N 1.47016 * 107.40002 * 22.11803 * 16 15 13 18 18 C 1.34775 * 125.65165 * 181.09921 * 17 16 15 19 19 O 1.21697 * 120.00327 * 180.02562 * 18 17 16 20 20 C 1.46676 * 119.99498 * 0.02854 * 18 17 16 21 21 C 1.37873 * 126.23116 * 179.68864 * 20 18 17 22 22 C 1.39841 * 107.08777 * 179.84532 * 21 20 18 23 23 C 1.35459 * 107.85816 * 0.41621 * 22 21 20 24 24 N 1.35526 * 108.87247 * 359.73840 * 23 22 21 25 25 H 0.97004 * 125.67245 * 180.02562 * 24 23 22 26 26 C 1.47754 * 108.53014 * 1.17726 * 17 16 15 27 27 H 1.09007 * 109.47183 * 54.74891 * 1 2 3 28 28 H 1.09007 * 109.47326 * 174.74606 * 1 2 3 29 29 H 1.08996 * 109.47317 * 294.74780 * 1 2 3 30 30 H 0.96997 * 120.00212 * 94.99676 * 4 2 1 31 31 H 0.96993 * 119.99758 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.72217 * 88.05822 * 15 13 2 33 33 H 1.08997 * 110.72240 * 324.78643 * 15 13 2 34 34 H 1.09002 * 109.87985 * 141.60674 * 16 15 13 35 35 H 1.08994 * 109.88178 * 262.61853 * 16 15 13 36 36 H 1.08000 * 126.46221 * 359.96011 * 21 20 18 37 37 H 1.07997 * 126.07495 * 180.18207 * 22 21 20 38 38 H 1.07997 * 125.55851 * 179.70994 * 23 22 21 39 39 H 1.08998 * 110.29316 * 216.94511 * 26 17 16 40 40 H 1.08999 * 110.52487 * 94.68051 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6114 -0.6622 3.5092 8 7 2.9235 -1.9396 3.4502 9 14 2.7891 0.2693 5.1185 10 1 1.5211 0.1780 5.8859 11 1 3.8935 -0.3240 5.9145 12 1 3.0942 1.6946 4.8343 13 6 2.0400 -0.7211 -1.2494 14 1 1.6226 -1.7258 -1.3164 15 6 3.5908 -0.7604 -1.2747 16 6 3.9096 -0.8549 -2.7818 17 7 2.7420 -0.3392 -3.5113 18 6 2.6195 -0.2736 -4.8519 19 8 1.6031 0.1747 -5.3488 20 6 3.7113 -0.7425 -5.7118 21 6 3.7209 -0.7408 -7.0905 22 6 4.9518 -1.2680 -7.4935 23 6 5.6533 -1.5842 -6.3787 24 7 4.9106 -1.2698 -5.2895 25 1 5.1796 -1.3951 -4.3660 26 6 1.7286 0.0959 -2.5281 27 1 -0.3634 0.5932 -0.8393 28 1 -0.3634 -1.0234 -0.0941 29 1 -0.3634 0.4302 0.9332 30 1 2.2490 -1.6319 1.1524 31 1 3.2462 -2.3970 4.2423 32 1 3.9631 -1.6379 -0.7460 33 1 4.0067 0.1527 -0.8490 34 1 4.7875 -0.2518 -3.0134 35 1 4.0902 -1.8937 -3.0580 36 1 2.9280 -0.3956 -7.7374 37 1 5.2828 -1.4029 -8.5126 38 1 6.6427 -2.0168 -6.3608 39 1 0.7268 -0.1342 -2.8907 40 1 1.8231 1.1633 -2.3287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569805096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 27.403753 kcal Electronic energy + Delta-G solvation = -21385.328642 eV Core-core repulsion = 18201.191368 eV Total energy + Delta-G solvation = -3184.137275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.50909 -39.57916 -37.72010 -35.32720 -32.60185 -31.32216 -30.70404 -29.65253 -28.99111 -27.46934 -24.83624 -23.56222 -21.77516 -21.48849 -20.67871 -20.19137 -19.72286 -17.88823 -17.15626 -16.29437 -16.27409 -15.34906 -14.80375 -14.41612 -14.04197 -13.96782 -13.73075 -13.53118 -13.27129 -12.90120 -12.69539 -12.59686 -12.46832 -12.40513 -12.18853 -11.77137 -11.27192 -10.94523 -10.79995 -10.65599 -10.49343 -10.27961 -10.15537 -9.91255 -9.68993 -9.20098 -8.97162 -8.80383 -8.36431 -7.02598 -5.82719 -3.11296 1.35453 2.58027 2.79075 3.04692 3.32196 3.39305 3.45196 3.46074 4.37279 4.54239 4.58707 4.79069 4.86823 4.92999 5.13488 5.17501 5.25168 5.30538 5.47419 5.56495 5.80332 5.82764 5.88642 5.90675 5.94343 5.96596 6.12985 6.15088 6.27756 6.36543 6.51265 6.55858 6.58968 6.75869 6.81497 7.04933 7.17261 7.41876 7.65168 8.07063 8.35877 9.47490 10.03851 10.38981 11.39876 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.003577 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.877633 B = 7824.818484 C = 8443.794352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.112 4.112 16 C 0.086 3.914 17 N -0.618 5.618 18 C 0.601 3.399 19 O -0.533 6.533 20 C -0.049 4.049 21 C -0.111 4.111 22 C -0.213 4.213 23 C 0.016 3.984 24 N -0.543 5.543 25 H 0.419 0.581 26 C 0.115 3.885 27 H 0.038 0.962 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.383 0.617 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 0.266 -17.626 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.038 4.038 17 N -0.351 5.351 18 C 0.391 3.609 19 O -0.410 6.410 20 C -0.163 4.163 21 C -0.137 4.137 22 C -0.238 4.238 23 C -0.120 4.120 24 N -0.143 5.143 25 H 0.261 0.739 26 C -0.007 4.007 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.098 0.902 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.027 0.636 -17.629 18.343 hybrid contribution 0.447 -0.049 1.386 1.457 sum 5.474 0.587 -16.243 17.151 Atomic orbital electron populations 1.22490 0.99096 1.00680 1.00546 1.20132 0.91907 0.95161 0.85321 0.93200 1.42363 1.78189 1.10659 1.05128 1.19219 1.36425 0.93871 0.87285 0.91200 1.24716 1.02205 0.95959 0.97993 1.69655 1.51027 1.08629 1.28863 0.86218 0.77308 0.78810 0.84025 1.21758 1.21833 1.20779 1.22696 0.95234 0.99995 0.94311 0.90011 1.22558 0.96502 1.04637 0.91324 1.22334 0.88649 0.97924 0.94861 1.48546 1.19088 1.62785 1.04726 1.16729 0.85816 0.78438 0.79905 1.90835 1.29582 1.47070 1.73558 1.20424 0.88805 1.12583 0.94442 1.21315 0.98472 1.02112 0.91838 1.20901 0.95755 1.08741 0.98373 1.22087 0.98432 1.05372 0.86121 1.42768 1.13853 1.48161 1.09557 0.73864 1.22399 0.92074 0.98956 0.87230 0.94321 0.93553 0.92478 0.78310 0.93540 0.89176 0.89745 0.91752 0.91769 0.83555 0.83992 0.81256 0.90188 0.90962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.29 37.16 0.35 -2.56 16 2 C 0.19 3.37 2.42 -67.93 -0.16 3.20 16 3 H 0.05 0.93 7.99 -51.93 -0.42 0.52 16 4 N -0.72 -16.68 4.76 -53.42 -0.25 -16.93 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 9 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.10 -1.53 2.62 -88.47 -0.23 -1.76 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.11 -1.52 6.07 -24.90 -0.15 -1.67 16 16 C 0.09 0.95 5.10 -3.06 -0.02 0.94 16 17 N -0.62 -8.45 3.34 -171.80 -0.57 -9.02 16 18 C 0.60 9.13 7.83 -12.85 -0.10 9.03 16 19 O -0.53 -9.77 17.16 5.19 0.09 -9.68 16 20 C -0.05 -0.63 6.89 -81.98 -0.56 -1.20 16 21 C -0.11 -1.33 10.65 -39.12 -0.42 -1.75 16 22 C -0.21 -2.03 10.81 -39.97 -0.43 -2.46 16 23 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 24 N -0.54 -5.28 5.61 -9.39 -0.05 -5.33 16 25 H 0.42 3.32 4.92 -40.82 -0.20 3.12 16 26 C 0.12 1.64 5.77 -2.35 -0.01 1.63 16 27 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.38 9.42 7.80 -40.82 -0.32 9.11 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 34 H 0.06 0.61 7.23 -51.93 -0.38 0.23 16 35 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 36 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 40 H 0.07 1.02 7.97 -51.93 -0.41 0.60 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -31.62 329.28 -8.15 -39.77 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.83 Total: 9.30 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.19 Total: -3.49 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.16 Total: -57.57 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.62 -8.15 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569805096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.178 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds