Wall clock time and date at job start Mon Mar 30 2020 02:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47034 * 2 1 4 4 N 1.46500 * 109.47399 * 120.00668 * 2 1 3 5 5 C 1.36934 * 119.99739 * 275.00070 * 4 2 1 6 6 H 1.08004 * 120.00188 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00294 * 179.97438 * 5 4 2 8 8 N 1.31628 * 119.99587 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00462 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47175 * 89.99893 * 9 7 5 11 11 H 1.48502 * 109.47031 * 210.00227 * 9 7 5 12 12 H 1.48501 * 109.47102 * 329.99704 * 9 7 5 13 13 C 1.53008 * 109.47034 * 240.00697 * 2 1 3 14 14 H 1.08996 * 110.91293 * 304.74533 * 13 2 1 15 15 C 1.55152 * 111.00304 * 180.84470 * 13 2 1 16 16 C 1.54329 * 102.94182 * 206.41971 * 15 13 2 17 17 N 1.47016 * 107.40002 * 22.11803 * 16 15 13 18 18 C 1.34775 * 125.65165 * 181.09921 * 17 16 15 19 19 O 1.21697 * 120.00327 * 180.02562 * 18 17 16 20 20 C 1.46676 * 119.99498 * 0.02854 * 18 17 16 21 21 C 1.37873 * 126.23116 * 179.68864 * 20 18 17 22 22 C 1.39841 * 107.08777 * 179.84532 * 21 20 18 23 23 C 1.35459 * 107.85816 * 0.41621 * 22 21 20 24 24 N 1.35526 * 108.87247 * 359.73840 * 23 22 21 25 25 H 0.97004 * 125.67245 * 180.02562 * 24 23 22 26 26 C 1.47754 * 108.53014 * 1.17726 * 17 16 15 27 27 H 1.09007 * 109.47183 * 54.74891 * 1 2 3 28 28 H 1.09007 * 109.47326 * 174.74606 * 1 2 3 29 29 H 1.08996 * 109.47317 * 294.74780 * 1 2 3 30 30 H 0.96997 * 120.00212 * 94.99676 * 4 2 1 31 31 H 0.96993 * 119.99758 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.72217 * 88.05822 * 15 13 2 33 33 H 1.08997 * 110.72240 * 324.78643 * 15 13 2 34 34 H 1.09002 * 109.87985 * 141.60674 * 16 15 13 35 35 H 1.08994 * 109.88178 * 262.61853 * 16 15 13 36 36 H 1.08000 * 126.46221 * 359.96011 * 21 20 18 37 37 H 1.07997 * 126.07495 * 180.18207 * 22 21 20 38 38 H 1.07997 * 125.55851 * 179.70994 * 23 22 21 39 39 H 1.08998 * 110.29316 * 216.94511 * 26 17 16 40 40 H 1.08999 * 110.52487 * 94.68051 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3757 6 1 1.8926 1.0403 2.4242 7 6 2.6114 -0.6622 3.5092 8 7 2.9235 -1.9396 3.4502 9 14 2.7891 0.2693 5.1185 10 1 1.5211 0.1780 5.8859 11 1 3.8935 -0.3240 5.9145 12 1 3.0942 1.6946 4.8343 13 6 2.0400 -0.7211 -1.2494 14 1 1.6226 -1.7258 -1.3164 15 6 3.5908 -0.7604 -1.2747 16 6 3.9096 -0.8549 -2.7818 17 7 2.7420 -0.3392 -3.5113 18 6 2.6195 -0.2736 -4.8519 19 8 1.6031 0.1747 -5.3488 20 6 3.7113 -0.7425 -5.7118 21 6 3.7209 -0.7408 -7.0905 22 6 4.9518 -1.2680 -7.4935 23 6 5.6533 -1.5842 -6.3787 24 7 4.9106 -1.2698 -5.2895 25 1 5.1796 -1.3951 -4.3660 26 6 1.7286 0.0959 -2.5281 27 1 -0.3634 0.5932 -0.8393 28 1 -0.3634 -1.0234 -0.0941 29 1 -0.3634 0.4302 0.9332 30 1 2.2490 -1.6319 1.1524 31 1 3.2462 -2.3970 4.2423 32 1 3.9631 -1.6379 -0.7460 33 1 4.0067 0.1527 -0.8490 34 1 4.7875 -0.2518 -3.0134 35 1 4.0902 -1.8937 -3.0580 36 1 2.9280 -0.3956 -7.7374 37 1 5.2828 -1.4029 -8.5126 38 1 6.6427 -2.0168 -6.3608 39 1 0.7268 -0.1342 -2.8907 40 1 1.8231 1.1633 -2.3287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569805096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:32 Heat of formation + Delta-G solvation = 7.128075 kcal Electronic energy + Delta-G solvation = -21386.207862 eV Core-core repulsion = 18201.191368 eV Total energy + Delta-G solvation = -3185.016494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.35874 -40.65583 -38.97790 -36.86707 -34.32199 -32.36863 -31.87049 -30.87415 -30.22248 -28.73910 -26.32501 -25.08270 -23.04468 -22.46667 -21.57427 -21.14468 -20.99537 -19.20024 -18.75908 -17.52442 -17.30554 -16.62631 -16.22113 -15.64505 -15.49006 -15.09057 -14.81841 -14.70770 -14.66148 -14.06376 -13.88165 -13.86301 -13.55734 -13.46519 -13.22574 -13.17321 -12.88052 -12.79507 -12.32932 -12.18258 -12.04275 -11.74703 -11.55767 -11.44718 -11.28431 -10.92375 -10.02750 -9.84969 -9.17694 -8.97752 -7.91139 -5.17915 0.42987 1.49121 1.50177 1.57712 1.76075 1.83146 2.26525 2.31170 2.58055 3.32849 3.43285 3.51545 3.72412 3.79103 4.06322 4.19745 4.27398 4.33980 4.38136 4.42833 4.52066 4.55128 4.59792 4.68115 4.81099 4.91019 5.00994 5.04837 5.14273 5.14676 5.25730 5.30506 5.35459 5.55409 5.59230 5.76544 5.94979 6.31010 6.34530 6.52005 6.95991 7.38679 8.13772 8.38016 9.32039 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.003577 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.877633 B = 7824.818484 C = 8443.794352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.729 5.729 5 C -0.232 4.232 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.293 1.293 11 H -0.297 1.297 12 H -0.271 1.271 13 C -0.093 4.093 14 H 0.079 0.921 15 C -0.108 4.108 16 C 0.092 3.908 17 N -0.618 5.618 18 C 0.597 3.403 19 O -0.578 6.578 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.225 4.225 23 C 0.041 3.959 24 N -0.536 5.536 25 H 0.427 0.573 26 C 0.120 3.880 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.374 0.626 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.138 0.862 37 H 0.165 0.835 38 H 0.214 0.786 39 H 0.073 0.927 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.288 0.302 -18.753 20.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.220 1.220 11 H -0.224 1.224 12 H -0.196 1.196 13 C -0.113 4.113 14 H 0.097 0.903 15 C -0.146 4.146 16 C -0.031 4.031 17 N -0.351 5.351 18 C 0.389 3.611 19 O -0.459 6.459 20 C -0.195 4.195 21 C -0.150 4.150 22 C -0.249 4.249 23 C -0.096 4.096 24 N -0.137 5.137 25 H 0.271 0.729 26 C -0.002 4.002 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.206 0.794 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.182 0.818 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.767 0.700 -18.761 19.956 hybrid contribution -0.079 -0.051 1.628 1.630 sum 6.688 0.649 -17.133 18.404 Atomic orbital electron populations 1.22372 0.98177 1.00895 1.00627 1.20284 0.92381 0.94942 0.84990 0.93401 1.42490 1.78322 1.10309 1.05839 1.19546 1.34438 0.94056 0.88312 0.90939 1.25404 1.03286 0.96791 1.00945 1.69791 1.52851 1.09963 1.29187 0.85275 0.76655 0.78182 0.80475 1.22040 1.22395 1.19578 1.22472 0.96363 0.99406 0.93056 0.90298 1.22463 0.95137 1.03885 0.93125 1.22399 0.88428 0.99641 0.92596 1.48553 1.19535 1.62496 1.04468 1.17088 0.85953 0.77864 0.80209 1.90795 1.31459 1.49323 1.74333 1.20117 0.89732 1.15361 0.94338 1.21531 0.99531 1.02157 0.91817 1.21236 0.94801 1.08732 1.00113 1.22831 0.99252 1.02572 0.84971 1.42752 1.12913 1.47596 1.10480 0.72896 1.22263 0.92200 0.98868 0.86904 0.91627 0.93786 0.94430 0.79369 0.94199 0.89770 0.90675 0.89352 0.89677 0.84400 0.81752 0.76939 0.90825 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.29 71.98 0.67 -4.82 16 2 C 0.18 6.58 2.42 44.99 0.11 6.69 16 3 H 0.05 1.76 7.99 -2.38 -0.02 1.74 16 4 N -0.73 -33.77 4.76 -322.93 -1.54 -35.31 16 5 C -0.23 -12.14 9.93 84.03 0.83 -11.31 16 6 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.97 -56.59 13.06 21.65 0.28 -56.30 16 9 Si 0.96 44.77 29.55 68.60 2.03 46.79 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 C -0.09 -2.72 2.62 -9.40 -0.02 -2.75 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 15 C -0.11 -2.81 6.07 31.78 0.19 -2.62 16 16 C 0.09 1.85 5.10 86.73 0.44 2.29 16 17 N -0.62 -16.25 3.34 -815.67 -2.72 -18.97 16 18 C 0.60 17.94 7.83 86.45 0.68 18.62 16 19 O -0.58 -21.66 17.16 -4.34 -0.07 -21.74 16 20 C -0.08 -2.02 6.89 40.35 0.28 -1.74 16 21 C -0.12 -2.83 10.65 22.57 0.24 -2.59 16 22 C -0.23 -3.62 10.81 22.02 0.24 -3.39 16 23 C 0.04 0.51 11.89 83.48 0.99 1.50 16 24 N -0.54 -8.78 5.61 -183.63 -1.03 -9.81 16 25 H 0.43 5.26 4.92 -92.71 -0.46 4.80 16 26 C 0.12 3.33 5.77 86.79 0.50 3.83 16 27 H 0.06 1.87 7.75 -2.38 -0.02 1.85 16 28 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.37 18.60 7.80 -92.71 -0.72 17.87 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 34 H 0.09 1.40 7.23 -2.39 -0.02 1.39 16 35 H 0.09 1.40 7.08 -2.39 -0.02 1.38 16 36 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.07 2.14 8.05 -2.39 -0.02 2.13 16 40 H 0.07 2.03 7.97 -2.39 -0.02 2.01 16 Total: -1.00 -69.18 329.28 2.44 -66.74 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.13 Total: 28.36 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.62 Total: 0.24 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -5.00 Total: -120.40 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.07 Total: -21.74 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.18 2.44 -66.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569805096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.873 kcal (2) G-P(sol) polarization free energy of solvation -69.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds