Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46882 * 2 1 4 4 N 1.46504 * 109.47060 * 240.00839 * 2 1 3 5 5 C 1.36932 * 120.00434 * 84.99287 * 4 2 1 6 6 H 1.08006 * 119.99881 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00132 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99920 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99904 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47099 * 89.99944 * 9 7 5 11 11 H 1.48504 * 109.46990 * 210.00163 * 9 7 5 12 12 H 1.48506 * 109.47064 * 330.00042 * 9 7 5 13 13 C 1.52999 * 109.47391 * 120.00375 * 2 1 3 14 14 H 1.08998 * 110.88521 * 59.89637 * 13 2 1 15 15 C 1.55157 * 111.00188 * 183.81967 * 13 2 1 16 16 C 1.54336 * 103.01989 * 153.38213 * 15 13 2 17 17 N 1.47023 * 107.26535 * 338.13798 * 16 15 13 18 18 C 1.34778 * 125.65260 * 178.84811 * 17 16 15 19 19 O 1.21688 * 120.00509 * 179.69561 * 18 17 16 20 20 C 1.46679 * 119.99316 * 359.69302 * 18 17 16 21 21 C 1.37870 * 126.22884 * 179.97438 * 20 18 17 22 22 C 1.39835 * 107.08326 * 179.80464 * 21 20 18 23 23 C 1.35448 * 107.86582 * 0.38368 * 22 21 20 24 24 N 1.35531 * 108.87019 * 359.61429 * 23 22 21 25 25 H 0.97004 * 125.67914 * 180.27313 * 24 23 22 26 26 C 1.47425 * 108.70250 * 358.58656 * 17 16 15 27 27 H 1.09007 * 109.46789 * 185.08168 * 1 2 3 28 28 H 1.08998 * 109.46926 * 305.07452 * 1 2 3 29 29 H 1.08990 * 109.47281 * 65.07983 * 1 2 3 30 30 H 0.97004 * 119.99491 * 264.99919 * 4 2 1 31 31 H 0.96997 * 119.99609 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.71992 * 271.94079 * 15 13 2 33 33 H 1.08998 * 110.72301 * 35.03744 * 15 13 2 34 34 H 1.08998 * 109.99306 * 218.66989 * 16 15 13 35 35 H 1.08998 * 109.77898 * 97.49135 * 16 15 13 36 36 H 1.08000 * 126.45793 * 0.04783 * 21 20 18 37 37 H 1.08005 * 126.06785 * 180.27556 * 22 21 20 38 38 H 1.07998 * 125.56547 * 179.87353 * 23 22 21 39 39 H 1.09002 * 110.36692 * 143.19302 * 26 17 16 40 40 H 1.08995 * 110.37289 * 265.40502 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4242 7 6 2.6112 -0.6617 -3.5094 8 7 2.9234 -1.9390 -3.4506 9 14 2.7901 0.2705 -5.1183 10 1 4.1527 0.8547 -5.2030 11 1 2.5790 -0.6605 -6.2559 12 1 1.7808 1.3583 -5.1750 13 6 2.0401 -0.7213 1.2492 14 1 1.6881 -1.7526 1.2733 15 6 3.5881 -0.6590 1.3342 16 6 3.8578 -0.7700 2.8497 17 7 2.6292 -0.3562 3.5431 18 6 2.4503 -0.3341 4.8788 19 8 1.3880 0.0337 5.3445 20 6 3.5363 -0.7537 5.7710 21 6 3.4941 -0.7817 7.1488 22 6 4.7368 -1.2483 7.5884 23 6 5.5024 -1.4837 6.4962 24 7 4.7835 -1.1902 5.3854 25 1 5.0957 -1.2743 4.4708 26 6 1.6272 0.0367 2.5355 27 1 -0.3633 -1.0237 0.0910 28 1 -0.3633 0.5905 0.8410 29 1 -0.3633 0.4330 -0.9319 30 1 2.2491 -1.6317 -1.1528 31 1 3.2460 -2.3963 -4.2429 32 1 4.0377 -1.4946 0.7979 33 1 3.9578 0.2901 0.9461 34 1 4.6811 -0.1132 3.1308 35 1 4.0991 -1.8013 3.1068 36 1 2.6574 -0.5003 7.7710 37 1 5.0341 -1.3935 8.6166 38 1 6.5184 -1.8499 6.5082 39 1 0.6302 -0.2693 2.8526 40 1 1.6579 1.1135 2.3697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569805098.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = 27.299201 kcal Electronic energy + Delta-G solvation = -21378.244710 eV Core-core repulsion = 18194.102902 eV Total energy + Delta-G solvation = -3184.141808 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.51630 -39.60182 -37.72440 -35.33182 -32.60890 -31.32497 -30.71609 -29.66944 -28.99622 -27.43812 -24.85573 -23.57491 -21.76659 -21.49986 -20.68791 -20.19453 -19.71686 -17.90608 -17.14411 -16.30157 -16.29737 -15.35538 -14.81165 -14.41310 -14.03699 -13.97404 -13.74131 -13.52453 -13.23842 -12.90403 -12.71994 -12.62038 -12.45871 -12.42112 -12.18931 -11.78484 -11.28285 -10.93827 -10.80774 -10.65158 -10.50176 -10.26948 -10.16060 -9.91519 -9.69040 -9.20447 -8.97040 -8.80668 -8.36766 -7.02424 -5.82506 -3.11090 1.35071 2.57709 2.79219 3.04398 3.31806 3.39115 3.45302 3.46391 4.36849 4.54226 4.57705 4.78368 4.86019 4.92345 5.13336 5.17220 5.24467 5.30200 5.47444 5.56141 5.80066 5.82566 5.88530 5.90592 5.93948 5.95968 6.12879 6.15279 6.26355 6.37371 6.49545 6.55542 6.59154 6.75538 6.81985 7.05236 7.16868 7.41211 7.65260 8.06806 8.36018 9.47632 10.04048 10.39133 11.40091 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.003550 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.461705 B = 7884.882157 C = 8490.647631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.114 4.114 16 C 0.086 3.914 17 N -0.617 5.617 18 C 0.601 3.399 19 O -0.533 6.533 20 C -0.049 4.049 21 C -0.111 4.111 22 C -0.213 4.213 23 C 0.016 3.984 24 N -0.543 5.543 25 H 0.419 0.581 26 C 0.115 3.885 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.383 0.617 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.444 0.660 17.909 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.151 4.151 16 C -0.037 4.037 17 N -0.351 5.351 18 C 0.391 3.609 19 O -0.410 6.410 20 C -0.163 4.163 21 C -0.137 4.137 22 C -0.238 4.238 23 C -0.120 4.120 24 N -0.143 5.143 25 H 0.261 0.739 26 C -0.007 4.007 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.187 0.813 39 H 0.098 0.902 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.885 0.985 17.890 18.571 hybrid contribution 0.497 -0.010 -1.372 1.459 sum 5.382 0.975 16.517 17.399 Atomic orbital electron populations 1.22493 0.99110 1.00705 1.00541 1.20130 0.91912 0.95138 0.85312 0.93216 1.42368 1.78195 1.10645 1.05138 1.19217 1.36457 0.93851 0.87285 0.91201 1.24717 1.02215 0.95940 0.98000 1.69653 1.50992 1.08611 1.28905 0.86220 0.77770 0.78632 0.83748 1.21770 1.21817 1.20776 1.22686 0.94847 1.00404 0.94234 0.89955 1.22569 0.96816 1.04523 0.91241 1.22334 0.87328 0.98766 0.95288 1.48477 1.15928 1.65826 1.04878 1.16734 0.86318 0.77941 0.79927 1.90833 1.26386 1.48731 1.75050 1.20427 0.87031 1.14157 0.94645 1.21315 0.98586 1.02194 0.91637 1.20899 0.94772 1.09542 0.98549 1.22085 0.98463 1.05709 0.85756 1.42766 1.11556 1.50487 1.09541 0.73875 1.22343 0.92277 0.99455 0.86618 0.93538 0.94305 0.92481 0.78317 0.93536 0.89160 0.89869 0.91695 0.91735 0.83551 0.83991 0.81258 0.90154 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.23 37.16 0.34 -2.58 16 2 C 0.19 3.38 2.40 -67.93 -0.16 3.21 16 3 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 4 N -0.72 -16.73 4.88 -53.42 -0.26 -16.99 16 5 C -0.24 -6.24 9.93 -15.06 -0.15 -6.38 16 6 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 9 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.10 -1.52 2.64 -88.47 -0.23 -1.76 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.11 -1.52 6.19 -24.89 -0.15 -1.68 16 16 C 0.09 0.95 5.11 -3.06 -0.02 0.93 16 17 N -0.62 -8.41 3.33 -172.05 -0.57 -8.98 16 18 C 0.60 9.10 7.82 -12.85 -0.10 9.00 16 19 O -0.53 -9.74 17.14 5.20 0.09 -9.65 16 20 C -0.05 -0.63 6.89 -81.98 -0.56 -1.20 16 21 C -0.11 -1.32 10.65 -39.12 -0.42 -1.74 16 22 C -0.21 -2.02 10.81 -39.98 -0.43 -2.45 16 23 C 0.02 0.13 11.89 -16.91 -0.20 -0.07 16 24 N -0.54 -5.24 5.61 -9.39 -0.05 -5.30 16 25 H 0.42 3.28 4.92 -40.82 -0.20 3.08 16 26 C 0.12 1.64 5.52 -2.53 -0.01 1.62 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.57 7.60 -51.93 -0.39 0.18 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.38 9.47 7.80 -40.82 -0.32 9.15 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.06 0.60 7.26 -51.93 -0.38 0.23 16 35 H 0.06 0.62 7.06 -51.93 -0.37 0.25 16 36 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 40 H 0.07 1.00 8.04 -51.93 -0.42 0.59 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -31.70 329.18 -8.17 -39.87 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.83 Total: 9.26 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.20 Total: -3.53 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.16 Total: -57.62 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.70 -8.17 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569805098.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.168 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds