Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47255 * 2 1 4 4 C 1.50695 * 109.47213 * 119.99777 * 2 1 3 5 5 H 1.08005 * 119.99943 * 119.99807 * 4 2 1 6 6 C 1.37881 * 120.00524 * 300.00439 * 4 2 1 7 7 N 1.31518 * 119.99464 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00310 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47253 * 89.99910 * 8 6 4 10 10 H 1.48501 * 109.47079 * 209.99735 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00006 * 8 6 4 12 12 C 1.50695 * 109.47201 * 240.00137 * 2 1 3 13 13 O 1.21280 * 120.00015 * 269.63888 * 12 2 1 14 14 N 1.34781 * 120.00255 * 89.63998 * 12 2 1 15 15 C 1.47327 * 119.47576 * 354.72430 * 14 12 2 16 16 C 1.51930 * 106.83342 * 258.13667 * 15 14 12 17 17 C 1.34291 * 128.41224 * 118.76398 * 16 15 14 18 18 N 1.35307 * 107.37330 * 179.22412 * 17 16 15 19 19 H 0.96998 * 126.00835 * 180.15354 * 18 17 16 20 20 N 1.40361 * 107.98541 * 0.17883 * 18 17 16 21 21 C 1.30292 * 108.08553 * 0.27719 * 20 18 17 22 22 C 1.51473 * 127.60260 * 178.20586 * 21 20 18 23 23 C 1.53594 * 107.47638 * 246.14747 * 22 21 20 24 24 H 1.09004 * 109.20077 * 38.68517 * 23 22 21 25 25 C 1.53007 * 109.19912 * 158.01334 * 23 22 21 26 26 C 1.45138 * 119.57318 * 174.85393 * 14 12 2 27 27 H 1.08998 * 109.47086 * 186.42111 * 1 2 3 28 28 H 1.09003 * 109.47109 * 306.42457 * 1 2 3 29 29 H 1.08997 * 109.46782 * 66.42103 * 1 2 3 30 30 H 0.96993 * 119.99808 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.99368 * 138.78188 * 15 14 12 32 32 H 1.08999 * 109.99932 * 17.49312 * 15 14 12 33 33 H 1.08001 * 126.31180 * 359.22110 * 17 16 15 34 34 H 1.08999 * 109.86128 * 5.64133 * 22 21 20 35 35 H 1.08999 * 109.86095 * 126.58961 * 22 21 20 36 36 H 1.08999 * 109.46847 * 60.00260 * 25 23 22 37 37 H 1.09000 * 109.47022 * 180.02562 * 25 23 22 38 38 H 1.09000 * 109.46674 * 299.99831 * 25 23 22 39 39 H 1.08995 * 108.32655 * 349.05685 * 26 14 12 40 40 H 1.09004 * 108.19659 * 231.87213 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4860 -2.5662 3.7119 12 6 2.0324 -0.7104 -1.2304 13 8 2.2407 -1.9047 -1.1985 14 7 2.2501 -0.0184 -2.3664 15 6 1.8836 1.4072 -2.4285 16 6 0.5738 1.4918 -3.1936 17 6 -0.6125 1.9558 -2.7684 18 7 -1.4814 1.8494 -3.8002 19 1 -2.4156 2.1100 -3.7881 20 7 -0.7933 1.2953 -4.8908 21 6 0.4368 1.0738 -4.5228 22 6 1.5485 0.4506 -5.3414 23 6 1.9062 -0.8922 -4.6870 24 1 0.9933 -1.3760 -4.3393 25 6 2.5887 -1.7899 -5.7210 26 6 2.8392 -0.6882 -3.5113 27 1 -0.3633 -1.0212 0.1149 28 1 -0.3633 0.6102 0.8269 29 1 -0.3633 0.4111 -0.9419 30 1 0.7095 1.1618 3.4844 31 1 2.6577 1.9686 -2.9515 32 1 1.7530 1.8027 -1.4212 33 1 -0.8324 2.3426 -1.7843 34 1 1.2078 0.2852 -6.3634 35 1 2.4193 1.1062 -5.3432 36 1 3.4963 -1.3050 -6.0805 37 1 2.8441 -2.7446 -5.2612 38 1 1.9115 -1.9598 -6.5580 39 1 3.2029 -1.6635 -3.1881 40 1 3.6925 -0.0994 -3.8482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637998920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = 33.172558 kcal Electronic energy + Delta-G solvation = -22616.376223 eV Core-core repulsion = 19432.489102 eV Total energy + Delta-G solvation = -3183.887120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30216 -39.09468 -36.55664 -34.22723 -33.58089 -31.84654 -30.48880 -30.23958 -27.10437 -26.47327 -25.19082 -25.04605 -22.21440 -20.97652 -20.40390 -19.18914 -18.52066 -17.35973 -16.42676 -16.04386 -15.40440 -14.70423 -14.69313 -14.51626 -14.21939 -13.90428 -13.13822 -12.98006 -12.76062 -12.56494 -12.54881 -12.24995 -11.96439 -11.46229 -11.38441 -11.32801 -10.99005 -10.89641 -10.70700 -10.64778 -10.59061 -10.37939 -10.13393 -10.00390 -9.24064 -8.93243 -8.60024 -8.37420 -8.24785 -7.97770 -6.04179 -4.05884 2.05691 2.83524 2.98788 3.32968 3.38959 3.46366 3.76237 3.87757 4.47275 4.64423 4.92071 4.97079 5.05281 5.29593 5.33586 5.46869 5.53214 5.56307 5.65085 5.74115 5.76605 5.88011 5.96787 6.08411 6.13304 6.21921 6.28695 6.39435 6.48310 6.70288 6.77907 6.90289 7.02171 7.27076 7.42296 7.48428 7.76682 7.81795 7.98442 8.11717 8.41147 8.98934 9.28919 9.58677 11.03729 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.005914 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.924564 B = 4733.622846 C = 5671.129142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.033 3.967 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.067 0.933 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.549 6.549 14 N -0.617 5.617 15 C 0.184 3.816 16 C -0.249 4.249 17 C 0.081 3.919 18 N -0.489 5.489 19 H 0.436 0.564 20 N -0.299 5.299 21 C 0.089 3.911 22 C -0.031 4.031 23 C -0.100 4.100 24 H 0.073 0.927 25 C -0.141 4.141 26 C 0.115 3.885 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.017 0.983 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.181 0.819 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 4.812 -14.058 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.012 3.988 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.085 0.915 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.315 3.685 13 O -0.425 6.425 14 N -0.351 5.351 15 C 0.060 3.940 16 C -0.262 4.262 17 C -0.065 4.065 18 N -0.198 5.198 19 H 0.280 0.720 20 N -0.121 5.121 21 C -0.080 4.080 22 C -0.070 4.070 23 C -0.121 4.121 24 H 0.091 0.909 25 C -0.199 4.199 26 C -0.009 4.009 27 H 0.051 0.949 28 H 0.106 0.894 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.502 4.183 -14.807 15.460 hybrid contribution 0.093 -0.119 1.553 1.560 sum -1.409 4.063 -13.254 13.935 Atomic orbital electron populations 1.21736 0.96302 1.01006 0.99690 1.18876 0.94237 0.96469 0.89218 0.93418 1.21077 1.31062 1.12379 0.89202 0.91482 1.24906 0.95078 0.95060 0.98975 1.69869 1.37114 1.23085 1.23477 0.86485 0.78437 0.80349 0.82165 1.20662 1.21283 1.19766 1.22036 0.74667 0.87532 0.84269 1.90514 1.51643 1.15904 1.84447 1.48001 1.64276 1.10280 1.12499 1.20316 0.90818 0.82021 1.00854 1.20557 0.97639 1.12118 0.95857 1.22197 0.89847 1.00291 0.94155 1.46355 1.12074 1.52460 1.08870 0.72036 1.77029 1.06296 1.19339 1.09403 1.22367 0.93250 0.97858 0.94514 1.20400 0.93794 0.95539 0.97297 1.21276 1.00253 0.94844 0.95733 0.90894 1.21772 1.00400 0.99482 0.98276 1.20678 0.94327 0.99565 0.86304 0.94899 0.89380 0.96421 0.93015 0.90655 0.87669 0.80170 0.90419 0.89790 0.92431 0.92182 0.92516 0.89572 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.86 37.16 0.33 -2.66 16 2 C 0.03 0.80 1.87 -92.93 -0.17 0.63 16 3 H 0.05 1.15 5.99 -51.93 -0.31 0.84 16 4 C -0.50 -14.00 8.32 -34.44 -0.29 -14.28 16 5 H 0.07 2.00 7.13 -52.48 -0.37 1.62 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.46 11.39 55.43 0.63 -23.83 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 12.10 6.70 -10.99 -0.07 12.03 16 13 O -0.55 -14.55 15.24 5.56 0.08 -14.47 16 14 N -0.62 -11.20 2.67 -175.67 -0.47 -11.67 16 15 C 0.18 2.81 5.98 -4.13 -0.02 2.79 16 16 C -0.25 -3.72 5.20 -104.75 -0.54 -4.26 16 17 C 0.08 1.10 10.25 -17.41 -0.18 0.92 16 18 N -0.49 -6.25 7.38 30.32 0.22 -6.02 16 19 H 0.44 4.06 8.96 -182.40 -1.63 2.43 16 20 N -0.30 -4.51 12.69 33.81 0.43 -4.08 16 21 C 0.09 1.31 6.40 -82.20 -0.53 0.78 16 22 C -0.03 -0.38 5.34 -27.19 -0.15 -0.52 16 23 C -0.10 -1.34 2.63 -91.08 -0.24 -1.58 16 24 H 0.07 1.21 7.89 -51.93 -0.41 0.80 16 25 C -0.14 -1.50 9.02 37.16 0.34 -1.16 16 26 C 0.12 1.78 4.88 -5.55 -0.03 1.76 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 2.15 6.27 -51.93 -0.33 1.83 16 29 H 0.02 0.34 5.28 -51.93 -0.27 0.06 16 30 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.11 1.71 5.38 -51.93 -0.28 1.43 16 33 H 0.18 2.11 7.76 -52.49 -0.41 1.71 16 34 H 0.08 0.86 7.97 -51.93 -0.41 0.45 16 35 H 0.08 0.89 7.92 -51.93 -0.41 0.47 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.09 1.51 6.77 -51.93 -0.35 1.16 16 40 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -32.82 315.26 -7.87 -40.69 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.85 Total: 2.08 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.65 Total: -4.00 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.82 Total: -45.61 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.82 -7.87 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637998920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.865 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds