Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47255 * 2 1 4 4 C 1.50695 * 109.47213 * 119.99777 * 2 1 3 5 5 H 1.08005 * 119.99943 * 119.99807 * 4 2 1 6 6 C 1.37881 * 120.00524 * 300.00439 * 4 2 1 7 7 N 1.31518 * 119.99464 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00310 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47253 * 89.99910 * 8 6 4 10 10 H 1.48501 * 109.47079 * 209.99735 * 8 6 4 11 11 H 1.48501 * 109.47275 * 330.00006 * 8 6 4 12 12 C 1.50695 * 109.47201 * 240.00137 * 2 1 3 13 13 O 1.21280 * 120.00015 * 269.63888 * 12 2 1 14 14 N 1.34781 * 120.00255 * 89.63998 * 12 2 1 15 15 C 1.47327 * 119.47576 * 354.72430 * 14 12 2 16 16 C 1.51930 * 106.83342 * 258.13667 * 15 14 12 17 17 C 1.34291 * 128.41224 * 118.76398 * 16 15 14 18 18 N 1.35307 * 107.37330 * 179.22412 * 17 16 15 19 19 H 0.96998 * 126.00835 * 180.15354 * 18 17 16 20 20 N 1.40361 * 107.98541 * 0.17883 * 18 17 16 21 21 C 1.30292 * 108.08553 * 0.27719 * 20 18 17 22 22 C 1.51473 * 127.60260 * 178.20586 * 21 20 18 23 23 C 1.53594 * 107.47638 * 246.14747 * 22 21 20 24 24 H 1.09004 * 109.20077 * 38.68517 * 23 22 21 25 25 C 1.53007 * 109.19912 * 158.01334 * 23 22 21 26 26 C 1.45138 * 119.57318 * 174.85393 * 14 12 2 27 27 H 1.08998 * 109.47086 * 186.42111 * 1 2 3 28 28 H 1.09003 * 109.47109 * 306.42457 * 1 2 3 29 29 H 1.08997 * 109.46782 * 66.42103 * 1 2 3 30 30 H 0.96993 * 119.99808 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.99368 * 138.78188 * 15 14 12 32 32 H 1.08999 * 109.99932 * 17.49312 * 15 14 12 33 33 H 1.08001 * 126.31180 * 359.22110 * 17 16 15 34 34 H 1.08999 * 109.86128 * 5.64133 * 22 21 20 35 35 H 1.08999 * 109.86095 * 126.58961 * 22 21 20 36 36 H 1.08999 * 109.46847 * 60.00260 * 25 23 22 37 37 H 1.09000 * 109.47022 * 180.02562 * 25 23 22 38 38 H 1.09000 * 109.46674 * 299.99831 * 25 23 22 39 39 H 1.08995 * 108.32655 * 349.05685 * 26 14 12 40 40 H 1.09004 * 108.19659 * 231.87213 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.6297 -0.5458 4.4124 10 1 1.3431 -0.9492 5.1120 11 1 2.4860 -2.5662 3.7119 12 6 2.0324 -0.7104 -1.2304 13 8 2.2407 -1.9047 -1.1985 14 7 2.2501 -0.0184 -2.3664 15 6 1.8836 1.4072 -2.4285 16 6 0.5738 1.4918 -3.1936 17 6 -0.6125 1.9558 -2.7684 18 7 -1.4814 1.8494 -3.8002 19 1 -2.4156 2.1100 -3.7881 20 7 -0.7933 1.2953 -4.8908 21 6 0.4368 1.0738 -4.5228 22 6 1.5485 0.4506 -5.3414 23 6 1.9062 -0.8922 -4.6870 24 1 0.9933 -1.3760 -4.3393 25 6 2.5887 -1.7899 -5.7210 26 6 2.8392 -0.6882 -3.5113 27 1 -0.3633 -1.0212 0.1149 28 1 -0.3633 0.6102 0.8269 29 1 -0.3633 0.4111 -0.9419 30 1 0.7095 1.1618 3.4844 31 1 2.6577 1.9686 -2.9515 32 1 1.7530 1.8027 -1.4212 33 1 -0.8324 2.3426 -1.7843 34 1 1.2078 0.2852 -6.3634 35 1 2.4193 1.1062 -5.3432 36 1 3.4963 -1.3050 -6.0805 37 1 2.8441 -2.7446 -5.2612 38 1 1.9115 -1.9598 -6.5580 39 1 3.2029 -1.6635 -3.1881 40 1 3.6925 -0.0994 -3.8482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637998920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = 11.612398 kcal Electronic energy + Delta-G solvation = -22617.311142 eV Core-core repulsion = 19432.489102 eV Total energy + Delta-G solvation = -3184.822039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42011 -40.69439 -37.89430 -35.92241 -35.27291 -32.96116 -32.33987 -31.51996 -28.05180 -27.70834 -27.24019 -26.44815 -23.91903 -22.09208 -21.64721 -20.31959 -19.94175 -18.65526 -18.34258 -17.67965 -17.04273 -16.39781 -15.98917 -15.69678 -15.42240 -15.31750 -14.72035 -14.41084 -14.11476 -13.97971 -13.89904 -13.48173 -13.19608 -13.00094 -12.92996 -12.61365 -12.60584 -12.51892 -12.38163 -12.19434 -12.06692 -12.00170 -11.67259 -11.43306 -10.96802 -10.57294 -10.29247 -10.17649 -9.63268 -9.34163 -8.13706 -6.22107 0.97493 1.41072 1.42574 1.53738 1.67307 1.95449 2.06489 2.38662 2.54462 3.16255 3.60647 3.84699 3.91283 3.98361 4.21762 4.26662 4.38403 4.52415 4.54321 4.62857 4.73346 4.75527 4.85680 4.88955 4.95142 5.03179 5.07333 5.09390 5.15512 5.20564 5.31098 5.43701 5.49824 5.69080 5.74444 5.86951 5.96872 6.22444 6.47929 6.63072 6.76744 6.82337 7.42164 7.57132 8.92368 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022061 B = 0.005914 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.924564 B = 4733.622846 C = 5671.129142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.032 3.968 3 H 0.053 0.947 4 C -0.529 4.529 5 H 0.038 0.962 6 C 0.026 3.974 7 N -0.905 5.905 8 Si 0.950 3.050 9 H -0.270 1.270 10 H -0.275 1.275 11 H -0.284 1.284 12 C 0.519 3.481 13 O -0.596 6.596 14 N -0.607 5.607 15 C 0.183 3.817 16 C -0.271 4.271 17 C 0.083 3.917 18 N -0.480 5.480 19 H 0.450 0.550 20 N -0.321 5.321 21 C 0.081 3.919 22 C -0.026 4.026 23 C -0.090 4.090 24 H 0.034 0.966 25 C -0.136 4.136 26 C 0.110 3.890 27 H 0.005 0.995 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.265 0.735 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.198 0.802 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.416 6.293 -15.296 16.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.011 3.989 3 H 0.071 0.929 4 C -0.568 4.568 5 H 0.056 0.944 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.210 1.210 12 C 0.310 3.690 13 O -0.477 6.477 14 N -0.338 5.338 15 C 0.060 3.940 16 C -0.283 4.283 17 C -0.064 4.064 18 N -0.189 5.189 19 H 0.296 0.704 20 N -0.143 5.143 21 C -0.088 4.088 22 C -0.065 4.065 23 C -0.110 4.110 24 H 0.053 0.947 25 C -0.194 4.194 26 C -0.013 4.013 27 H 0.024 0.976 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.215 0.785 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.223 5.721 -16.091 17.121 hybrid contribution -0.035 -0.527 1.906 1.978 sum -1.258 5.194 -14.185 15.158 Atomic orbital electron populations 1.21532 0.95593 0.99112 1.00809 1.18800 0.94774 0.96323 0.89039 0.92913 1.21201 1.31881 1.12262 0.91429 0.94397 1.25486 0.95152 0.95727 1.01016 1.69917 1.36908 1.23300 1.24292 0.85678 0.78644 0.78638 0.79422 1.19532 1.20000 1.20976 1.21769 0.74787 0.86946 0.85468 1.90484 1.54034 1.17716 1.85430 1.47968 1.62687 1.11362 1.11814 1.20493 0.92381 0.80194 1.00918 1.20599 0.97819 1.13646 0.96276 1.22498 0.89645 0.99470 0.94794 1.46390 1.12732 1.51607 1.08204 0.70360 1.76987 1.06699 1.20171 1.10480 1.22768 0.93693 0.97597 0.94727 1.20494 0.93993 0.94666 0.97388 1.21147 0.98230 0.96080 0.95586 0.94734 1.21743 1.01493 0.98515 0.97605 1.20932 0.95847 0.98650 0.85911 0.97616 0.90564 0.93304 0.92534 0.87302 0.88777 0.78545 0.88940 0.87316 0.89909 0.93294 0.91219 0.92275 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.26 8.86 71.98 0.64 -4.62 16 2 C 0.03 1.57 1.87 -12.29 -0.02 1.55 16 3 H 0.05 2.56 5.99 -2.38 -0.01 2.55 16 4 C -0.53 -30.56 8.32 25.60 0.21 -30.35 16 5 H 0.04 2.36 7.13 -2.91 -0.02 2.34 16 6 C 0.03 1.43 5.30 84.65 0.45 1.88 16 7 N -0.91 -49.18 11.39 21.45 0.24 -48.93 16 8 Si 0.95 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 12 C 0.52 24.56 6.70 87.65 0.59 25.14 16 13 O -0.60 -33.04 15.24 -3.03 -0.05 -33.08 16 14 N -0.61 -21.67 2.67 -828.07 -2.21 -23.88 16 15 C 0.18 5.24 5.98 85.87 0.51 5.76 16 16 C -0.27 -7.55 5.20 -19.94 -0.10 -7.65 16 17 C 0.08 2.09 10.25 83.26 0.85 2.94 16 18 N -0.48 -11.33 7.38 -57.98 -0.43 -11.75 16 19 H 0.45 7.52 8.96 -213.15 -1.91 5.61 16 20 N -0.32 -9.08 12.69 -46.94 -0.60 -9.67 16 21 C 0.08 2.20 6.40 43.46 0.28 2.48 16 22 C -0.03 -0.56 5.34 30.29 0.16 -0.40 16 23 C -0.09 -2.27 2.63 -11.09 -0.03 -2.30 16 24 H 0.03 1.14 7.89 -2.38 -0.02 1.12 16 25 C -0.14 -2.58 9.02 71.98 0.65 -1.93 16 26 C 0.11 3.27 4.88 86.13 0.42 3.69 16 27 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 3.74 6.27 -2.39 -0.01 3.72 16 29 H 0.05 1.91 5.28 -2.39 -0.01 1.90 16 30 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.09 2.93 5.38 -2.39 -0.01 2.91 16 33 H 0.20 4.18 7.76 -2.91 -0.02 4.16 16 34 H 0.09 1.73 7.97 -2.39 -0.02 1.71 16 35 H 0.11 1.80 7.92 -2.39 -0.02 1.78 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 38 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 39 H 0.06 2.11 6.77 -2.39 -0.02 2.09 16 40 H 0.09 2.09 8.00 -2.38 -0.02 2.07 16 Total: -1.00 -72.66 315.26 2.75 -69.91 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -0.85 Total: 14.74 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 4.61 Total: -3.81 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -2.99 Total: -94.24 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.05 Total: -33.08 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -72.66 2.75 -69.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637998920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.521 kcal (2) G-P(sol) polarization free energy of solvation -72.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds