Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46699 * 2 1 4 4 C 1.52998 * 109.47288 * 240.00283 * 2 1 3 5 5 C 1.52999 * 109.47303 * 174.99912 * 4 2 1 6 6 N 1.46497 * 109.46992 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99732 * 180.02562 * 6 5 4 8 8 O 1.21783 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.41517 * 119.99893 * 179.72584 * 7 6 5 10 10 C 1.35615 * 120.00021 * 180.27532 * 9 7 6 11 11 C 1.41669 * 119.99932 * 180.02562 * 10 9 7 12 12 C 1.38282 * 126.25557 * 179.68695 * 11 10 9 13 13 C 1.39784 * 107.07520 * 179.84562 * 12 11 10 14 14 C 1.35501 * 107.91317 * 0.41760 * 13 12 11 15 15 N 1.35759 * 108.90804 * 359.74134 * 14 13 12 16 16 H 0.96997 * 125.69205 * 179.97438 * 15 14 13 17 17 N 1.46494 * 109.47239 * 119.99669 * 2 1 3 18 18 C 1.36938 * 120.00504 * 275.00530 * 17 2 1 19 19 H 1.08004 * 119.99647 * 359.97438 * 18 17 2 20 20 C 1.38810 * 120.00192 * 180.02562 * 18 17 2 21 21 N 1.31613 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47220 * 59.99506 * 22 20 18 24 24 H 1.48494 * 109.47237 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.47175 * 299.99962 * 22 20 18 26 26 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47616 * 299.99944 * 1 2 3 28 28 H 1.09003 * 109.47314 * 59.99939 * 1 2 3 29 29 H 1.09000 * 109.47250 * 54.99228 * 4 2 1 30 30 H 1.09001 * 109.46719 * 294.99693 * 4 2 1 31 31 H 1.09003 * 109.46690 * 59.99829 * 5 4 2 32 32 H 1.08993 * 109.47209 * 299.99855 * 5 4 2 33 33 H 0.97000 * 120.00583 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.99761 * 0.26980 * 9 7 6 35 35 H 1.08001 * 119.99687 * 359.97438 * 10 9 7 36 36 H 1.08004 * 126.46254 * 359.97438 * 12 11 10 37 37 H 1.08007 * 126.04648 * 180.15849 * 13 12 11 38 38 H 1.08001 * 125.55245 * 179.71439 * 14 13 12 39 39 H 0.97006 * 120.00044 * 94.99555 * 17 2 1 40 40 H 0.97004 * 120.00304 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3742 -1.3405 -2.7747 8 8 6.1618 -0.7984 -2.0203 9 6 5.8465 -2.0131 -3.9268 10 6 7.1761 -2.0544 -4.1906 11 6 7.6488 -2.7272 -5.3442 12 6 8.9687 -2.8438 -5.7396 13 6 8.9783 -3.5858 -6.9242 14 6 7.6957 -3.8954 -7.2324 15 7 6.8775 -3.3793 -6.2799 16 1 5.9108 -3.4568 -6.2618 17 7 2.0183 -0.6905 1.1961 18 6 2.1491 -0.0074 2.3758 19 1 1.8925 1.0406 2.4242 20 6 2.6123 -0.6616 3.5090 21 7 2.9254 -1.9386 3.4499 22 14 2.7913 0.2704 5.1179 23 1 1.4690 0.8072 5.5288 24 1 3.3002 -0.6480 6.1680 25 1 3.7464 1.3930 4.9361 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7714 -1.2056 31 1 3.9994 -1.0727 -0.4259 32 1 3.8532 0.4370 -1.3573 33 1 3.4260 -1.7364 -3.1102 34 1 5.1480 -2.4935 -4.5959 35 1 7.8745 -1.5736 -3.5216 36 1 9.8300 -2.4399 -5.2282 37 1 9.8530 -3.8599 -7.4954 38 1 7.3761 -4.4605 -8.0956 39 1 2.2490 -1.6317 1.1527 40 1 3.2495 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662909737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = 27.217575 kcal Electronic energy + Delta-G solvation = -20112.403682 eV Core-core repulsion = 16928.258334 eV Total energy + Delta-G solvation = -3184.145348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40555 -39.56045 -36.60141 -34.37745 -33.88416 -32.21997 -31.39245 -29.68087 -28.63939 -27.79218 -24.43621 -23.55820 -22.16611 -21.10161 -20.57942 -20.13642 -19.34126 -17.91927 -17.24316 -16.76687 -15.64142 -15.31148 -14.75344 -14.53463 -14.23169 -14.14261 -13.90166 -13.77102 -13.42775 -12.93260 -12.68329 -12.50978 -12.41253 -12.19698 -12.00265 -11.51772 -11.06864 -10.87651 -10.70531 -10.61234 -10.45571 -10.27343 -10.01002 -9.69013 -9.59570 -9.29821 -8.88112 -8.74640 -7.91305 -6.91723 -5.71357 -3.00049 0.51654 2.25589 2.78182 2.88558 3.48466 3.52271 3.53049 3.53733 3.60827 4.64210 4.69435 4.76757 4.84522 5.03146 5.13819 5.29189 5.40619 5.43109 5.59745 5.65042 5.71137 5.81671 5.91462 6.03908 6.09932 6.11620 6.21719 6.38812 6.43033 6.53166 6.59229 6.69700 6.72910 6.78212 6.89232 7.08532 7.13174 7.74175 7.74966 8.46818 8.47170 9.58207 10.15019 10.49577 11.51299 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.002784 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.538784 B =10054.801492 C =10783.552847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.727 5.727 7 C 0.545 3.455 8 O -0.547 6.547 9 C -0.239 4.239 10 C 0.021 3.979 11 C 0.008 3.992 12 C -0.144 4.144 13 C -0.208 4.208 14 C 0.011 3.989 15 N -0.545 5.545 16 H 0.417 0.583 17 N -0.723 5.723 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.286 1.286 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.383 0.617 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -3.756 -23.941 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.335 3.665 8 O -0.427 6.427 9 C -0.261 4.261 10 C 0.000 4.000 11 C -0.102 4.102 12 C -0.170 4.170 13 C -0.232 4.232 14 C -0.124 4.124 15 N -0.139 5.139 16 H 0.254 0.746 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.212 1.212 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.130 0.870 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.185 0.815 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.813 -3.245 -23.215 24.150 hybrid contribution -0.757 -0.228 0.560 0.969 sum 5.056 -3.473 -22.654 23.470 Atomic orbital electron populations 1.22427 0.99195 1.00786 0.99933 1.20151 0.91833 0.95600 0.86066 0.93299 1.22053 0.94045 1.01692 0.99262 1.21436 0.94268 0.97182 0.87241 1.46043 1.07217 1.56905 1.27511 1.16918 0.82650 0.80954 0.86010 1.90870 1.55153 1.46599 1.50045 1.21782 0.96403 1.07392 1.00515 1.20862 0.96083 0.91153 0.91871 1.18331 0.91065 1.06144 0.94691 1.21560 0.94823 1.02712 0.97863 1.20898 0.96403 1.06098 0.99809 1.22056 0.90734 1.03861 0.95766 1.42197 1.09352 1.42474 1.19904 0.74587 1.42442 1.78096 1.10641 1.05340 1.19178 1.36584 0.93814 0.87350 0.91270 1.24724 1.02158 0.95967 0.98060 1.69643 1.50859 1.08681 1.28973 0.86288 0.77705 0.78670 0.83649 1.21382 1.21757 1.21238 0.93564 0.92722 0.94617 0.92039 0.91698 0.89723 0.91858 0.77257 0.86953 0.83113 0.83725 0.84208 0.81504 0.78301 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.38 2.89 -67.93 -0.20 3.18 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.05 4.87 -26.73 -0.13 -2.18 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.73 -10.16 5.55 -63.25 -0.35 -10.51 16 7 C 0.54 8.43 7.56 -15.01 -0.11 8.32 16 8 O -0.55 -11.02 16.11 5.11 0.08 -10.93 16 9 C -0.24 -2.70 9.39 -39.27 -0.37 -3.07 16 10 C 0.02 0.23 9.40 -39.21 -0.37 -0.14 16 11 C 0.01 0.07 6.74 -83.91 -0.57 -0.49 16 12 C -0.14 -1.33 10.86 -38.99 -0.42 -1.76 16 13 C -0.21 -1.63 10.81 -39.98 -0.43 -2.06 16 14 C 0.01 0.07 11.90 -16.79 -0.20 -0.13 16 15 N -0.54 -3.97 5.94 -10.56 -0.06 -4.04 16 16 H 0.42 2.02 7.87 -40.82 -0.32 1.70 16 17 N -0.72 -17.97 4.57 -53.43 -0.24 -18.22 16 18 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 22 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.82 7.75 -51.93 -0.40 1.41 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.39 4.06 8.43 -40.82 -0.34 3.72 16 34 H 0.11 0.88 6.93 -52.49 -0.36 0.51 16 35 H 0.15 1.79 7.46 -52.49 -0.39 1.40 16 36 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.38 10.16 7.80 -40.82 -0.32 9.85 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 344.48 15.07 5.19 5.19 Total: -1.00 -34.83 344.48 -8.31 -43.14 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.91 Total: 11.46 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.71 Total: -6.05 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: 0.07 Total: -60.67 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.83 -8.31 -43.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662909737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.359 kcal (2) G-P(sol) polarization free energy of solvation -34.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds