Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46699 * 2 1 4 4 C 1.52998 * 109.47288 * 240.00283 * 2 1 3 5 5 C 1.52999 * 109.47303 * 174.99912 * 4 2 1 6 6 N 1.46497 * 109.46992 * 179.97438 * 5 4 2 7 7 C 1.34786 * 119.99732 * 180.02562 * 6 5 4 8 8 O 1.21783 * 119.99936 * 359.97438 * 7 6 5 9 9 C 1.41517 * 119.99893 * 179.72584 * 7 6 5 10 10 C 1.35615 * 120.00021 * 180.27532 * 9 7 6 11 11 C 1.41669 * 119.99932 * 180.02562 * 10 9 7 12 12 C 1.38282 * 126.25557 * 179.68695 * 11 10 9 13 13 C 1.39784 * 107.07520 * 179.84562 * 12 11 10 14 14 C 1.35501 * 107.91317 * 0.41760 * 13 12 11 15 15 N 1.35759 * 108.90804 * 359.74134 * 14 13 12 16 16 H 0.96997 * 125.69205 * 179.97438 * 15 14 13 17 17 N 1.46494 * 109.47239 * 119.99669 * 2 1 3 18 18 C 1.36938 * 120.00504 * 275.00530 * 17 2 1 19 19 H 1.08004 * 119.99647 * 359.97438 * 18 17 2 20 20 C 1.38810 * 120.00192 * 180.02562 * 18 17 2 21 21 N 1.31613 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47220 * 59.99506 * 22 20 18 24 24 H 1.48494 * 109.47237 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.47175 * 299.99962 * 22 20 18 26 26 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47616 * 299.99944 * 1 2 3 28 28 H 1.09003 * 109.47314 * 59.99939 * 1 2 3 29 29 H 1.09000 * 109.47250 * 54.99228 * 4 2 1 30 30 H 1.09001 * 109.46719 * 294.99693 * 4 2 1 31 31 H 1.09003 * 109.46690 * 59.99829 * 5 4 2 32 32 H 1.08993 * 109.47209 * 299.99855 * 5 4 2 33 33 H 0.97000 * 120.00583 * 359.97438 * 6 5 4 34 34 H 1.08002 * 119.99761 * 0.26980 * 9 7 6 35 35 H 1.08001 * 119.99687 * 359.97438 * 10 9 7 36 36 H 1.08004 * 126.46254 * 359.97438 * 12 11 10 37 37 H 1.08007 * 126.04648 * 180.15849 * 13 12 11 38 38 H 1.08001 * 125.55245 * 179.71439 * 14 13 12 39 39 H 0.97006 * 120.00044 * 94.99555 * 17 2 1 40 40 H 0.97004 * 120.00304 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3742 -1.3405 -2.7747 8 8 6.1618 -0.7984 -2.0203 9 6 5.8465 -2.0131 -3.9268 10 6 7.1761 -2.0544 -4.1906 11 6 7.6488 -2.7272 -5.3442 12 6 8.9687 -2.8438 -5.7396 13 6 8.9783 -3.5858 -6.9242 14 6 7.6957 -3.8954 -7.2324 15 7 6.8775 -3.3793 -6.2799 16 1 5.9108 -3.4568 -6.2618 17 7 2.0183 -0.6905 1.1961 18 6 2.1491 -0.0074 2.3758 19 1 1.8925 1.0406 2.4242 20 6 2.6123 -0.6616 3.5090 21 7 2.9254 -1.9386 3.4499 22 14 2.7913 0.2704 5.1179 23 1 1.4690 0.8072 5.5288 24 1 3.3002 -0.6480 6.1680 25 1 3.7464 1.3930 4.9361 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.6053 -0.2617 -2.1370 30 1 1.7517 -1.7714 -1.2056 31 1 3.9994 -1.0727 -0.4259 32 1 3.8532 0.4370 -1.3573 33 1 3.4260 -1.7364 -3.1102 34 1 5.1480 -2.4935 -4.5959 35 1 7.8745 -1.5736 -3.5216 36 1 9.8300 -2.4399 -5.2282 37 1 9.8530 -3.8599 -7.4954 38 1 7.3761 -4.4605 -8.0956 39 1 2.2490 -1.6317 1.1527 40 1 3.2495 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662909737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = 2.213042 kcal Electronic energy + Delta-G solvation = -20113.487960 eV Core-core repulsion = 16928.258334 eV Total energy + Delta-G solvation = -3185.229626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03152 -40.78725 -38.17662 -35.85548 -34.83624 -34.12507 -32.00183 -31.22682 -30.05721 -28.88177 -25.95765 -25.11932 -23.38349 -21.99403 -21.50293 -21.20832 -20.51064 -19.26451 -18.68324 -17.82560 -16.99429 -16.75787 -16.35897 -15.65511 -15.37334 -15.23559 -15.19538 -14.82099 -14.53458 -14.48259 -14.13152 -13.57315 -13.31464 -13.25108 -13.21160 -12.92819 -12.79365 -12.63174 -12.32456 -12.24009 -12.12583 -11.65638 -11.60204 -11.32072 -11.04307 -10.91586 -10.08536 -9.89663 -8.98168 -8.61258 -7.92745 -5.19626 -0.33811 1.45155 1.48639 1.54039 1.56605 2.03367 2.34812 2.35783 2.56455 2.57068 3.41190 3.89838 3.91858 3.99489 4.01598 4.22251 4.37016 4.37848 4.44262 4.45671 4.52483 4.66767 4.76839 4.87959 4.94860 5.02169 5.10499 5.14739 5.23686 5.35255 5.38333 5.40203 5.50216 5.53529 5.61532 5.93566 6.05997 6.30199 6.63782 6.65394 7.32537 7.35940 8.14154 8.35320 9.30764 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025811 B = 0.002784 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.538784 B =10054.801492 C =10783.552847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.041 0.959 4 C -0.114 4.114 5 C 0.133 3.867 6 N -0.711 5.711 7 C 0.539 3.461 8 O -0.608 6.608 9 C -0.254 4.254 10 C 0.036 3.964 11 C -0.023 4.023 12 C -0.153 4.153 13 C -0.230 4.230 14 C 0.034 3.966 15 N -0.537 5.537 16 H 0.429 0.571 17 N -0.735 5.735 18 C -0.234 4.234 19 H 0.074 0.926 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.282 1.282 26 H 0.045 0.955 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.048 0.952 33 H 0.416 0.584 34 H 0.153 0.847 35 H 0.131 0.869 36 H 0.147 0.853 37 H 0.157 0.843 38 H 0.207 0.793 39 H 0.371 0.629 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -4.142 -27.074 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.152 4.152 5 C 0.008 3.992 6 N -0.363 5.363 7 C 0.332 3.668 8 O -0.492 6.492 9 C -0.275 4.275 10 C 0.015 3.985 11 C -0.133 4.133 12 C -0.179 4.179 13 C -0.253 4.253 14 C -0.103 4.103 15 N -0.132 5.132 16 H 0.269 0.731 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.092 0.908 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.209 1.209 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.254 0.746 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.224 0.776 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.606 -3.607 -26.405 27.046 hybrid contribution -0.307 -0.119 1.329 1.369 sum 4.299 -3.726 -25.077 25.714 Atomic orbital electron populations 1.22256 0.97017 1.01065 1.00886 1.20470 0.93233 0.95165 0.85705 0.94063 1.21902 0.92362 1.02052 0.98920 1.21071 0.95408 0.96023 0.86686 1.45800 1.07390 1.56390 1.26675 1.17604 0.82487 0.80235 0.86515 1.90838 1.56583 1.49452 1.52356 1.21671 0.97063 1.08793 1.00008 1.20809 0.95853 0.90002 0.91838 1.18158 0.91692 1.08112 0.95327 1.21882 0.94998 1.02473 0.98522 1.21238 0.97934 1.06482 0.99654 1.22744 0.90155 1.01703 0.95652 1.42236 1.10108 1.41634 1.19256 0.73090 1.42646 1.78417 1.10220 1.06319 1.19573 1.34505 0.94086 0.88473 0.90827 1.25511 1.03289 0.96904 1.01438 1.69803 1.52868 1.10205 1.29326 0.85286 0.77953 0.77294 0.79727 1.20176 1.22347 1.20858 0.93596 0.94866 0.90539 0.87626 0.90979 0.94853 0.93329 0.74641 0.82980 0.85147 0.83554 0.82557 0.77631 0.79691 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.49 71.98 0.68 -4.36 16 2 C 0.16 6.19 2.89 44.99 0.13 6.32 16 3 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 4 C -0.11 -3.34 4.87 30.59 0.15 -3.19 16 5 C 0.13 4.63 5.56 86.38 0.48 5.11 16 6 N -0.71 -19.49 5.55 -472.21 -2.62 -22.11 16 7 C 0.54 17.03 7.56 85.05 0.64 17.67 16 8 O -0.61 -26.05 16.11 -4.61 -0.07 -26.13 16 9 C -0.25 -5.55 9.39 22.47 0.21 -5.34 16 10 C 0.04 0.80 9.40 22.51 0.21 1.01 16 11 C -0.02 -0.42 6.74 39.08 0.26 -0.16 16 12 C -0.15 -2.68 10.86 22.65 0.25 -2.43 16 13 C -0.23 -3.03 10.81 22.01 0.24 -2.79 16 14 C 0.03 0.32 11.90 83.45 0.99 1.31 16 15 N -0.54 -6.23 5.94 -187.33 -1.11 -7.34 16 16 H 0.43 2.62 7.87 -92.71 -0.73 1.89 16 17 N -0.74 -37.21 4.57 -322.95 -1.48 -38.68 16 18 C -0.23 -13.31 9.93 84.03 0.83 -12.47 16 19 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 22 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 25 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 26 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 31 H 0.03 1.51 7.75 -2.39 -0.02 1.49 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.42 7.57 8.43 -92.71 -0.78 6.79 16 34 H 0.15 1.95 6.93 -2.91 -0.02 1.93 16 35 H 0.13 3.38 7.46 -2.91 -0.02 3.36 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.21 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.37 20.32 7.80 -92.70 -0.72 19.60 16 40 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -79.93 344.48 1.40 -78.53 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -1.17 Total: 30.47 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.55 Total: -3.57 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -4.93 Total: -129.33 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.07 Total: -26.13 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -79.93 1.40 -78.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662909737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.739 kcal (2) G-P(sol) polarization free energy of solvation -79.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds