Wall clock time and date at job start Mon Mar 30 2020 02:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 C 1.53000 * 109.47093 * 120.00674 * 2 1 3 5 5 C 1.53007 * 109.47122 * 184.99931 * 4 2 1 6 6 N 1.46490 * 109.47221 * 179.97438 * 5 4 2 7 7 C 1.34781 * 120.00221 * 180.02562 * 6 5 4 8 8 O 1.21777 * 119.99443 * 359.97438 * 7 6 5 9 9 C 1.41516 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.35622 * 119.99808 * 188.38472 * 9 7 6 11 11 C 1.41677 * 119.99965 * 32.31595 * 10 9 7 12 12 C 1.38276 * 126.25771 * 187.18720 * 11 10 9 13 13 C 1.39790 * 107.07649 * 180.02562 * 12 11 10 14 14 C 1.35504 * 107.90873 * 359.73438 * 13 12 11 15 15 N 1.35755 * 108.90879 * 0.42913 * 14 13 12 16 16 H 0.96997 * 125.68824 * 179.82227 * 15 14 13 17 17 N 1.46500 * 109.46875 * 240.00360 * 2 1 3 18 18 C 1.36930 * 120.00053 * 85.00112 * 17 2 1 19 19 H 1.08005 * 120.00428 * 359.97438 * 18 17 2 20 20 C 1.38819 * 120.00294 * 179.97438 * 18 17 2 21 21 N 1.31616 * 120.00496 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99622 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46905 * 89.99859 * 22 20 18 24 24 H 1.48496 * 109.46740 * 209.99948 * 22 20 18 25 25 H 1.48496 * 109.46872 * 329.99948 * 22 20 18 26 26 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46615 * 299.99448 * 1 2 3 28 28 H 1.08995 * 109.47304 * 59.99488 * 1 2 3 29 29 H 1.08998 * 109.47630 * 64.99744 * 4 2 1 30 30 H 1.09002 * 109.47044 * 304.99262 * 4 2 1 31 31 H 1.09005 * 109.46798 * 59.99739 * 5 4 2 32 32 H 1.08998 * 109.46821 * 300.00317 * 5 4 2 33 33 H 0.97008 * 120.00082 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.00212 * 8.38695 * 9 7 6 35 35 H 1.07999 * 119.99831 * 212.32202 * 10 9 7 36 36 H 1.08005 * 126.46089 * 0.03313 * 12 11 10 37 37 H 1.08003 * 126.04037 * 179.97438 * 13 12 11 38 38 H 1.07997 * 125.54283 * 180.26007 * 14 13 12 39 39 H 0.97001 * 119.99843 * 264.99967 * 17 2 1 40 40 H 0.96998 * 120.00314 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6135 1.3136 6 7 4.0532 -1.3036 2.5099 7 6 5.3740 -1.3389 2.7757 8 8 6.1616 -0.7974 2.0210 9 6 5.8456 -2.0052 3.9317 10 6 7.1488 -1.8984 4.2917 11 6 7.8624 -0.7043 4.0231 12 6 9.2185 -0.5036 4.2041 13 6 9.4944 0.8107 3.8159 14 6 8.3330 1.3772 3.4081 15 7 7.3322 0.4687 3.5345 16 1 6.3998 0.6196 3.3137 17 7 2.0183 -0.6905 -1.1962 18 6 2.1491 -0.0074 -2.3757 19 1 1.8919 1.0405 -2.4243 20 6 2.6122 -0.6615 -3.5091 21 7 2.7375 -0.0051 -4.6430 22 14 3.0578 -2.4738 -3.4250 23 1 1.8611 -3.2930 -3.7442 24 1 4.1334 -2.7650 -4.4065 25 1 3.5331 -2.8036 -2.0573 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.7517 -1.7716 1.2055 30 1 1.6055 -0.2619 2.1369 31 1 3.8532 0.4369 1.3573 32 1 3.9995 -1.0728 0.4258 33 1 3.4258 -1.7346 3.1113 34 1 5.1678 -2.5988 4.5273 35 1 7.6427 -2.7237 4.7830 36 1 9.9303 -1.2261 4.5753 37 1 10.4627 1.2886 3.8340 38 1 8.2213 2.3879 3.0444 39 1 2.2490 -1.6317 -1.1527 40 1 3.0608 -0.4623 -5.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662909738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:30 Heat of formation + Delta-G solvation = 54.653487 kcal Electronic energy + Delta-G solvation = -20985.845791 eV Core-core repulsion = 17802.890154 eV Total energy + Delta-G solvation = -3182.955637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34355 -39.54291 -36.85027 -34.57871 -33.79519 -32.26919 -30.95826 -30.01336 -28.88955 -27.81471 -24.47703 -23.32191 -22.15397 -20.93588 -20.41229 -20.18025 -19.59878 -18.14187 -17.50938 -16.51316 -15.59301 -15.50943 -14.77434 -14.42536 -14.22466 -14.02939 -13.88419 -13.75975 -13.26525 -13.09312 -12.81747 -12.54751 -12.35027 -12.21764 -12.05859 -11.96278 -11.26868 -11.07075 -10.79605 -10.68416 -10.44545 -10.09322 -9.98941 -9.76373 -9.58006 -9.04958 -8.94007 -8.80865 -7.61169 -7.27622 -5.76199 -3.11870 0.39610 2.56412 2.92619 3.30278 3.33895 3.38701 3.41398 3.46997 3.55425 4.60195 4.87799 4.88694 5.09686 5.13976 5.15597 5.28121 5.33698 5.40176 5.45831 5.56574 5.60198 5.81937 5.86486 5.92391 6.03183 6.18577 6.19702 6.21444 6.25833 6.33813 6.46169 6.57017 6.75087 6.86664 6.94850 7.04885 7.54889 7.56993 7.99327 8.27760 8.42727 9.20875 9.93561 10.12574 11.42246 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.003960 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.818092 B = 7069.149922 C = 7577.076560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.057 0.943 4 C -0.136 4.136 5 C 0.119 3.881 6 N -0.727 5.727 7 C 0.537 3.463 8 O -0.550 6.550 9 C -0.291 4.291 10 C 0.048 3.952 11 C 0.001 3.999 12 C -0.145 4.145 13 C -0.219 4.219 14 C 0.025 3.975 15 N -0.508 5.508 16 H 0.419 0.581 17 N -0.748 5.748 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.883 3.117 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.133 0.867 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.360 0.640 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.357 -2.296 23.201 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.075 0.925 4 C -0.175 4.175 5 C -0.004 4.004 6 N -0.377 5.377 7 C 0.330 3.670 8 O -0.432 6.432 9 C -0.313 4.313 10 C 0.027 3.973 11 C -0.110 4.110 12 C -0.170 4.170 13 C -0.243 4.243 14 C -0.114 4.114 15 N -0.104 5.104 16 H 0.262 0.738 17 N -0.391 5.391 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.182 0.818 39 H 0.193 0.807 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.685 -1.708 22.408 23.446 hybrid contribution -0.477 -1.591 -0.091 1.663 sum 6.208 -3.299 22.317 23.398 Atomic orbital electron populations 1.22396 0.98596 1.00878 1.00529 1.20119 0.92082 0.95807 0.84997 0.92496 1.22110 0.93988 1.01723 0.99638 1.21441 0.94388 0.97224 0.87306 1.46165 1.07325 1.56792 1.27376 1.17235 0.82427 0.80212 0.87161 1.90894 1.54728 1.46520 1.51055 1.21860 0.97307 1.11484 1.00695 1.20800 0.92196 0.92508 0.91774 1.18239 0.93692 0.88321 1.10788 1.21473 0.93139 0.97349 1.05058 1.20808 0.97922 0.95915 1.09691 1.22145 0.88154 0.96290 1.04761 1.42672 1.11020 1.10030 1.46650 0.73818 1.42822 1.79688 1.09427 1.07213 1.19057 1.37066 0.95609 0.85588 0.89191 1.24650 1.01320 0.97390 0.95578 1.69691 1.52633 1.35559 1.00257 0.86579 0.78065 0.86966 0.77078 1.21160 1.21732 1.20430 0.93617 0.94230 0.92205 0.91742 0.91465 0.91644 0.90258 0.76932 0.84900 0.83729 0.84252 0.84536 0.81804 0.80705 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.49 37.16 0.35 -2.36 16 2 C 0.18 3.26 2.89 -67.93 -0.20 3.07 16 3 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 4 C -0.14 -1.90 4.87 -26.73 -0.13 -2.03 16 5 C 0.12 1.85 5.56 -4.04 -0.02 1.82 16 6 N -0.73 -9.03 5.54 -63.25 -0.35 -9.38 16 7 C 0.54 7.49 6.32 -15.01 -0.09 7.39 16 8 O -0.55 -9.88 12.73 5.12 0.07 -9.81 16 9 C -0.29 -3.06 9.72 -39.27 -0.38 -3.45 16 10 C 0.05 0.49 9.76 -39.21 -0.38 0.10 16 11 C 0.00 0.01 5.95 -83.91 -0.50 -0.49 16 12 C -0.14 -1.64 10.86 -38.99 -0.42 -2.06 16 13 C -0.22 -2.47 10.81 -39.98 -0.43 -2.90 16 14 C 0.03 0.30 11.90 -16.79 -0.20 0.10 16 15 N -0.51 -6.59 4.51 -10.56 -0.05 -6.63 16 16 H 0.42 5.56 6.14 -40.82 -0.25 5.30 16 17 N -0.75 -17.31 4.38 -53.42 -0.23 -17.54 16 18 C -0.24 -6.84 10.41 -15.06 -0.16 -6.99 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.67 13.97 55.49 0.78 -28.90 16 22 Si 0.88 22.64 27.74 -169.99 -4.71 17.93 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.55 7.75 -51.93 -0.40 1.15 16 33 H 0.40 3.63 8.43 -40.82 -0.34 3.29 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 40 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 335.21 15.07 5.05 5.05 Total: -1.00 -34.86 335.21 -8.01 -42.86 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.89 Total: 14.13 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -2.66 Total: -7.70 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.14 Total: -62.46 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.86 -8.01 -42.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662909738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.518 kcal (2) G-P(sol) polarization free energy of solvation -34.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds