Wall clock time and date at job start Mon Mar 30 2020 02:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47119 * 2 1 4 4 C 1.53000 * 109.47093 * 120.00674 * 2 1 3 5 5 C 1.53007 * 109.47122 * 184.99931 * 4 2 1 6 6 N 1.46490 * 109.47221 * 179.97438 * 5 4 2 7 7 C 1.34781 * 120.00221 * 180.02562 * 6 5 4 8 8 O 1.21777 * 119.99443 * 359.97438 * 7 6 5 9 9 C 1.41516 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.35622 * 119.99808 * 188.38472 * 9 7 6 11 11 C 1.41677 * 119.99965 * 32.31595 * 10 9 7 12 12 C 1.38276 * 126.25771 * 187.18720 * 11 10 9 13 13 C 1.39790 * 107.07649 * 180.02562 * 12 11 10 14 14 C 1.35504 * 107.90873 * 359.73438 * 13 12 11 15 15 N 1.35755 * 108.90879 * 0.42913 * 14 13 12 16 16 H 0.96997 * 125.68824 * 179.82227 * 15 14 13 17 17 N 1.46500 * 109.46875 * 240.00360 * 2 1 3 18 18 C 1.36930 * 120.00053 * 85.00112 * 17 2 1 19 19 H 1.08005 * 120.00428 * 359.97438 * 18 17 2 20 20 C 1.38819 * 120.00294 * 179.97438 * 18 17 2 21 21 N 1.31616 * 120.00496 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99622 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46905 * 89.99859 * 22 20 18 24 24 H 1.48496 * 109.46740 * 209.99948 * 22 20 18 25 25 H 1.48496 * 109.46872 * 329.99948 * 22 20 18 26 26 H 1.09001 * 109.47119 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46615 * 299.99448 * 1 2 3 28 28 H 1.08995 * 109.47304 * 59.99488 * 1 2 3 29 29 H 1.08998 * 109.47630 * 64.99744 * 4 2 1 30 30 H 1.09002 * 109.47044 * 304.99262 * 4 2 1 31 31 H 1.09005 * 109.46798 * 59.99739 * 5 4 2 32 32 H 1.08998 * 109.46821 * 300.00317 * 5 4 2 33 33 H 0.97008 * 120.00082 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.00212 * 8.38695 * 9 7 6 35 35 H 1.07999 * 119.99831 * 212.32202 * 10 9 7 36 36 H 1.08005 * 126.46089 * 0.03313 * 12 11 10 37 37 H 1.08003 * 126.04037 * 179.97438 * 13 12 11 38 38 H 1.07997 * 125.54283 * 180.26007 * 14 13 12 39 39 H 0.97001 * 119.99843 * 264.99967 * 17 2 1 40 40 H 0.96998 * 120.00314 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5649 -0.6135 1.3136 6 7 4.0532 -1.3036 2.5099 7 6 5.3740 -1.3389 2.7757 8 8 6.1616 -0.7974 2.0210 9 6 5.8456 -2.0052 3.9317 10 6 7.1488 -1.8984 4.2917 11 6 7.8624 -0.7043 4.0231 12 6 9.2185 -0.5036 4.2041 13 6 9.4944 0.8107 3.8159 14 6 8.3330 1.3772 3.4081 15 7 7.3322 0.4687 3.5345 16 1 6.3998 0.6196 3.3137 17 7 2.0183 -0.6905 -1.1962 18 6 2.1491 -0.0074 -2.3757 19 1 1.8919 1.0405 -2.4243 20 6 2.6122 -0.6615 -3.5091 21 7 2.7375 -0.0051 -4.6430 22 14 3.0578 -2.4738 -3.4250 23 1 1.8611 -3.2930 -3.7442 24 1 4.1334 -2.7650 -4.4065 25 1 3.5331 -2.8036 -2.0573 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.7517 -1.7716 1.2055 30 1 1.6055 -0.2619 2.1369 31 1 3.8532 0.4369 1.3573 32 1 3.9995 -1.0728 0.4258 33 1 3.4258 -1.7346 3.1113 34 1 5.1678 -2.5988 4.5273 35 1 7.6427 -2.7237 4.7830 36 1 9.9303 -1.2261 4.5753 37 1 10.4627 1.2886 3.8340 38 1 8.2213 2.3879 3.0444 39 1 2.2490 -1.6317 -1.1527 40 1 3.0608 -0.4623 -5.4350 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662909738.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:29 Heat of formation + Delta-G solvation = 29.776389 kcal Electronic energy + Delta-G solvation = -20986.924543 eV Core-core repulsion = 17802.890154 eV Total energy + Delta-G solvation = -3184.034389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22482 -40.58104 -38.33788 -35.93416 -34.67315 -34.20839 -31.82922 -31.73113 -30.18406 -28.80979 -25.82852 -24.98868 -23.32882 -21.98746 -21.55745 -21.24867 -20.65453 -19.72526 -18.91904 -17.54624 -17.04572 -16.57652 -16.24502 -15.85393 -15.38808 -15.16439 -15.01063 -14.86037 -14.65134 -14.41784 -14.11578 -13.80170 -13.67435 -13.59311 -13.15195 -12.93818 -12.86283 -12.64530 -12.31793 -12.24806 -12.08661 -11.81141 -11.64027 -11.08919 -11.00144 -10.70214 -10.13333 -9.74038 -9.32371 -8.46175 -8.04440 -5.35957 -0.42531 1.32128 1.36226 1.42262 1.66479 2.02362 2.31766 2.45041 2.46278 2.63988 3.27979 3.59897 3.93599 4.06517 4.14394 4.17270 4.26766 4.33389 4.47929 4.53250 4.61012 4.67824 4.72590 4.80731 4.97123 5.04314 5.06317 5.10256 5.17681 5.33390 5.38308 5.41542 5.46697 5.56212 5.77381 6.05054 6.20464 6.20875 6.63044 6.64767 7.07460 7.29766 7.84923 8.01797 9.17660 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018752 B = 0.003960 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.818092 B = 7069.149922 C = 7577.076560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.118 4.118 5 C 0.128 3.872 6 N -0.712 5.712 7 C 0.530 3.470 8 O -0.599 6.599 9 C -0.297 4.297 10 C 0.052 3.948 11 C -0.025 4.025 12 C -0.151 4.151 13 C -0.230 4.230 14 C 0.005 3.995 15 N -0.521 5.521 16 H 0.413 0.587 17 N -0.751 5.751 18 C -0.223 4.223 19 H 0.057 0.943 20 C -0.065 4.065 21 N -0.986 5.986 22 Si 0.951 3.049 23 H -0.274 1.274 24 H -0.301 1.301 25 H -0.260 1.260 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.417 0.583 34 H 0.170 0.830 35 H 0.183 0.817 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.180 0.820 39 H 0.363 0.637 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -4.458 26.520 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.059 0.941 4 C -0.157 4.157 5 C 0.004 3.996 6 N -0.363 5.363 7 C 0.324 3.676 8 O -0.485 6.485 9 C -0.318 4.318 10 C 0.032 3.968 11 C -0.136 4.136 12 C -0.177 4.177 13 C -0.254 4.254 14 C -0.133 4.133 15 N -0.116 5.116 16 H 0.255 0.745 17 N -0.395 5.395 18 C -0.354 4.354 19 H 0.075 0.925 20 C -0.256 4.256 21 N -0.637 5.637 22 Si 0.779 3.221 23 H -0.200 1.200 24 H -0.228 1.228 25 H -0.185 1.185 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.188 0.812 35 H 0.201 0.799 36 H 0.182 0.818 37 H 0.173 0.827 38 H 0.197 0.803 39 H 0.196 0.804 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.346 -3.891 25.826 26.877 hybrid contribution -0.367 -0.770 -1.048 1.351 sum 5.979 -4.661 24.778 25.912 Atomic orbital electron populations 1.22251 0.96649 1.01590 1.00969 1.20434 0.93363 0.95234 0.84972 0.94069 1.21959 0.92560 1.02392 0.98750 1.21111 0.95322 0.96243 0.86923 1.45929 1.07482 1.56369 1.26527 1.17854 0.82299 0.79557 0.87882 1.90877 1.55947 1.48706 1.52926 1.21987 0.98025 1.11750 1.00085 1.21314 0.92025 0.92459 0.90989 1.18832 0.94557 0.89038 1.11191 1.21897 0.93345 0.97844 1.04584 1.21171 0.98550 0.96274 1.09373 1.22612 0.88392 0.97193 1.05146 1.42787 1.10948 1.10741 1.47081 0.74496 1.42859 1.79936 1.09534 1.07197 1.19043 1.34562 0.94447 0.87384 0.92492 1.25435 1.02638 1.02191 0.95334 1.69871 1.55068 1.37591 1.01160 0.85467 0.77677 0.81403 0.77542 1.19956 1.22802 1.18469 0.92710 0.90336 0.95263 0.90247 0.87298 0.93089 0.94758 0.74580 0.81227 0.79943 0.81765 0.82724 0.80268 0.80398 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.17 5.88 2.89 44.99 0.13 6.01 16 3 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 4 C -0.12 -2.95 4.87 30.60 0.15 -2.80 16 5 C 0.13 3.84 5.56 86.38 0.48 4.32 16 6 N -0.71 -16.14 5.54 -472.22 -2.62 -18.76 16 7 C 0.53 14.04 6.32 85.05 0.54 14.58 16 8 O -0.60 -21.70 12.73 -4.60 -0.06 -21.76 16 9 C -0.30 -5.39 9.72 22.47 0.22 -5.17 16 10 C 0.05 0.93 9.76 22.51 0.22 1.15 16 11 C -0.03 -0.59 5.95 39.08 0.23 -0.36 16 12 C -0.15 -3.19 10.86 22.65 0.25 -2.95 16 13 C -0.23 -4.98 10.81 22.01 0.24 -4.74 16 14 C 0.00 0.11 11.90 83.45 0.99 1.10 16 15 N -0.52 -13.48 4.51 -187.34 -0.84 -14.32 16 16 H 0.41 11.19 6.14 -92.71 -0.57 10.62 16 17 N -0.75 -34.54 4.38 -322.93 -1.41 -35.95 16 18 C -0.22 -12.87 10.41 84.04 0.87 -11.99 16 19 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 20 C -0.06 -3.92 5.50 84.86 0.47 -3.46 16 21 N -0.99 -64.96 13.97 21.65 0.30 -64.66 16 22 Si 0.95 47.42 27.74 68.60 1.90 49.32 16 23 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.30 -15.41 7.11 99.48 0.71 -14.71 16 25 H -0.26 -11.98 6.52 99.48 0.65 -11.33 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.03 1.34 7.75 -2.39 -0.02 1.32 16 33 H 0.42 6.04 8.43 -92.70 -0.78 5.26 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 37 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.36 16.25 5.66 -92.71 -0.52 15.73 16 40 H 0.26 16.15 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -79.98 335.21 1.86 -78.12 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -0.88 Total: 36.41 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 5.47 Total: -8.40 kcal Atomic # 7 Polarization: -129.12 SS G_CDS: -4.57 Total: -133.69 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.06 Total: -21.76 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 1.90 Total: 49.32 kcal Total: -79.98 1.86 -78.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662909738.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.896 kcal (2) G-P(sol) polarization free energy of solvation -79.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds