Wall clock time and date at job start Mon Mar 30 2020 02:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47331 * 2 1 4 4 C 1.53000 * 109.46966 * 119.99388 * 2 1 3 5 5 C 1.50701 * 109.47142 * 295.00214 * 4 2 1 6 6 H 1.07997 * 119.99954 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00068 * 180.02562 * 5 4 2 8 8 N 1.31522 * 120.00037 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00189 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47142 * 59.99723 * 9 7 5 11 11 H 1.48503 * 109.47036 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46960 * 299.99983 * 9 7 5 13 13 C 1.53001 * 109.47617 * 239.99791 * 2 1 3 14 14 N 1.46893 * 109.47333 * 63.54879 * 13 2 1 15 15 C 1.46435 * 110.99691 * 48.99680 * 14 13 2 16 16 C 1.53374 * 108.65938 * 179.01145 * 15 14 13 17 17 C 1.53037 * 107.94614 * 291.84417 * 16 15 14 18 18 C 1.50801 * 109.66864 * 47.31401 * 17 16 15 19 19 C 1.38831 * 118.13093 * 164.45425 * 18 17 16 20 20 F 1.35098 * 119.78463 * 359.36768 * 19 18 17 21 21 C 1.38284 * 120.43444 * 179.37096 * 19 18 17 22 22 C 1.38275 * 119.85529 * 359.97438 * 21 19 18 23 23 C 1.37815 * 119.98365 * 0.13564 * 22 21 19 24 24 C 1.38328 * 122.01975 * 344.08633 * 18 17 16 25 25 H 1.08998 * 109.47327 * 305.32371 * 1 2 3 26 26 H 1.09011 * 109.46845 * 65.31916 * 1 2 3 27 27 H 1.08993 * 109.47196 * 185.31520 * 1 2 3 28 28 H 1.08995 * 109.46936 * 54.99918 * 4 2 1 29 29 H 1.08996 * 109.47217 * 175.00309 * 4 2 1 30 30 H 0.96997 * 119.99929 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46522 * 303.55506 * 13 2 1 32 32 H 1.09003 * 109.47345 * 183.55636 * 13 2 1 33 33 H 1.08995 * 109.60369 * 59.26180 * 15 14 13 34 34 H 1.09002 * 109.74143 * 298.84572 * 15 14 13 35 35 H 1.08998 * 109.77023 * 172.23210 * 16 15 14 36 36 H 1.09005 * 109.80848 * 51.48155 * 16 15 14 37 37 H 1.08997 * 109.43681 * 287.25375 * 17 16 15 38 38 H 1.08997 * 109.43946 * 167.37223 * 17 16 15 39 39 H 1.07992 * 120.07232 * 180.02562 * 21 19 18 40 40 H 1.08002 * 120.01078 * 180.15495 * 22 21 19 41 41 H 1.08003 * 119.76344 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6412 0.0573 2.4766 6 1 1.0798 0.9743 2.3756 7 6 1.9930 -0.4013 3.7283 8 7 2.6771 -1.5179 3.8513 9 14 1.4982 0.5632 5.2496 10 1 0.0181 0.6686 5.3091 11 1 1.9933 -0.1367 6.4622 12 1 2.0893 1.9240 5.1869 13 6 2.0401 -0.7213 -1.2492 14 7 1.6218 0.0188 -2.4471 15 6 1.9357 1.4435 -2.3200 16 6 1.5006 2.1584 -3.6053 17 6 2.4130 1.6861 -4.7395 18 6 2.5257 0.1826 -4.7076 19 6 3.0302 -0.4599 -5.8302 20 9 3.3905 0.2638 -6.9125 21 6 3.1663 -1.8359 -5.8477 22 6 2.7985 -2.5782 -4.7405 23 6 2.2949 -1.9464 -3.6241 24 6 2.1512 -0.5576 -3.6007 25 1 -0.3634 0.5942 0.8384 26 1 -0.3633 0.4292 -0.9339 27 1 -0.3633 -1.0232 0.0952 28 1 1.6053 -1.7196 1.2953 29 1 3.1262 -0.7993 1.2058 30 1 2.9243 -1.8407 4.7319 31 1 1.6256 -1.7289 -1.2815 32 1 3.1282 -0.7768 -1.2178 33 1 3.0087 1.5701 -2.1763 34 1 1.4005 1.8638 -1.4685 35 1 1.5981 3.2366 -3.4785 36 1 0.4654 1.9066 -3.8357 37 1 3.4024 2.1267 -4.6166 38 1 1.9939 1.9982 -5.6961 39 1 3.5597 -2.3297 -6.7238 40 1 2.9060 -3.6528 -4.7506 41 1 2.0091 -2.5295 -2.7611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664238669.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:50 Heat of formation + Delta-G solvation = -47.489475 kcal Electronic energy + Delta-G solvation = -21613.052603 eV Core-core repulsion = 18405.747753 eV Total energy + Delta-G solvation = -3207.304850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90713 -41.61104 -38.41083 -36.64944 -35.08311 -33.74082 -31.42003 -30.34214 -28.89045 -27.74405 -25.81456 -24.74268 -24.42248 -22.63762 -20.83676 -20.29550 -18.72486 -18.37036 -17.69295 -17.09287 -16.73886 -16.58349 -16.22052 -16.00813 -15.77186 -15.19155 -14.71217 -14.62749 -14.27562 -14.19482 -13.85366 -13.72605 -13.43795 -13.21592 -13.08121 -12.76727 -12.70698 -12.60251 -12.24576 -12.12067 -12.06022 -11.84479 -11.58019 -11.36142 -11.09302 -11.00455 -10.72258 -10.51559 -9.59891 -8.71865 -8.16612 -6.25609 0.19744 0.30277 1.41747 1.43697 1.51297 2.40766 2.47131 2.79904 3.17428 3.33655 3.59691 3.75350 3.88867 3.97007 4.08247 4.19390 4.23552 4.35094 4.39558 4.42536 4.55967 4.59049 4.75692 4.79113 4.81075 4.87877 4.94097 4.99835 5.09890 5.14412 5.24075 5.25533 5.27263 5.42249 5.44037 5.48071 5.53333 5.76642 5.80758 5.87591 6.02125 6.27279 6.31659 6.89946 7.42857 8.95153 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031177 B = 0.003857 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.890099 B = 7256.860134 C = 7796.060347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 H 0.064 0.936 4 C 0.035 3.965 5 C -0.529 4.529 6 H 0.062 0.938 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.074 3.926 14 N -0.487 5.487 15 C 0.046 3.954 16 C -0.112 4.112 17 C -0.074 4.074 18 C -0.177 4.177 19 C 0.107 3.893 20 F -0.143 7.143 21 C -0.189 4.189 22 C -0.063 4.063 23 C -0.186 4.186 24 C 0.146 3.854 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.038 0.962 28 H -0.007 1.007 29 H -0.013 1.013 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 3.268 -19.175 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.003 4.003 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.198 5.198 15 C -0.080 4.080 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.181 4.181 19 C 0.087 3.913 20 F -0.122 7.122 21 C -0.209 4.209 22 C -0.081 4.081 23 C -0.207 4.207 24 C 0.045 3.955 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.012 0.988 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.295 3.219 -19.023 19.337 hybrid contribution 0.761 0.168 1.005 1.272 sum -0.534 3.386 -18.018 18.341 Atomic orbital electron populations 1.21536 0.94402 1.00810 1.00685 1.21189 0.96893 0.98960 0.92666 0.91759 1.18984 0.94183 0.94794 0.92340 1.21584 1.34503 1.08665 0.91948 0.91957 1.25905 0.95238 0.96033 1.02535 1.70089 1.40183 1.22930 1.24313 0.85605 0.78941 0.78816 0.78330 1.19243 1.21209 1.19274 1.22287 0.97523 0.97956 0.87351 1.58084 1.55747 1.04681 1.01319 1.22357 0.99653 0.85536 1.00410 1.21691 0.99782 1.01029 0.92433 1.20457 1.00970 0.89300 1.00399 1.19644 1.06997 0.97463 0.94015 1.17613 1.00289 0.89939 0.83435 1.91446 1.89538 1.78257 1.52941 1.21220 1.06563 0.91450 1.01684 1.21070 0.94845 1.01266 0.90946 1.21478 1.05213 0.92972 1.01062 1.18639 0.92554 0.93183 0.91116 0.93793 0.91650 0.94321 0.98839 0.99484 0.92971 0.89959 0.94811 0.94105 0.88728 0.88088 0.90825 0.90355 0.89683 0.82875 0.82289 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.66 71.98 0.62 -3.60 16 2 C -0.08 -3.03 1.83 -10.79 -0.02 -3.05 16 3 H 0.06 2.46 6.12 -2.38 -0.01 2.44 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -29.01 8.47 25.60 0.22 -28.79 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 0.02 5.46 84.65 0.46 0.48 16 8 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 9 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 13 C 0.07 2.47 3.73 86.30 0.32 2.79 16 14 N -0.49 -14.15 3.96 -695.85 -2.76 -16.91 16 15 C 0.05 1.20 4.62 86.52 0.40 1.60 16 16 C -0.11 -2.31 6.19 30.73 0.19 -2.12 16 17 C -0.07 -1.60 5.45 29.89 0.16 -1.43 16 18 C -0.18 -4.56 5.75 -19.67 -0.11 -4.67 16 19 C 0.11 2.61 7.22 22.42 0.16 2.78 16 20 F -0.14 -3.47 16.55 44.97 0.74 -2.72 16 21 C -0.19 -3.98 10.02 22.29 0.22 -3.75 16 22 C -0.06 -1.31 10.03 22.18 0.22 -1.09 16 23 C -0.19 -4.79 9.03 22.51 0.20 -4.58 16 24 C 0.15 4.05 5.81 38.30 0.22 4.28 16 25 H 0.04 1.67 7.11 -2.39 -0.02 1.65 16 26 H 0.06 2.04 7.29 -2.38 -0.02 2.03 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.08 2.71 6.33 -2.38 -0.02 2.70 16 32 H 0.03 1.19 8.12 -2.39 -0.02 1.17 16 33 H 0.04 1.11 8.11 -2.39 -0.02 1.09 16 34 H 0.09 2.52 5.87 -2.39 -0.01 2.51 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.66 7.95 -2.39 -0.02 1.64 16 39 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 40 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.13 3.39 5.97 -2.91 -0.02 3.38 16 Total: -1.00 -62.40 324.58 4.72 -57.68 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.01 Total: 11.49 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.41 Total: -39.28 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -2.47 Total: -72.80 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.74 Total: -2.72 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -62.40 4.72 -57.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664238669.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.188 kcal (2) G-P(sol) polarization free energy of solvation -62.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds