Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08995 * 109.47681 * 2 1 4 4 C 1.53005 * 109.47364 * 239.99612 * 2 1 3 5 5 C 1.50698 * 109.47008 * 64.99920 * 4 2 1 6 6 O 1.21282 * 119.99694 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00106 * 179.97438 * 5 4 2 8 8 C 1.46504 * 120.00033 * 180.02562 * 7 5 4 9 9 C 1.53951 * 113.73890 * 253.74485 * 8 7 5 10 10 N 1.47815 * 86.03463 * 222.08492 * 9 8 7 11 11 C 1.36934 * 134.45777 * 204.64600 * 10 9 8 12 12 H 1.07997 * 119.99883 * 173.34221 * 11 10 9 13 13 C 1.38810 * 119.99775 * 353.34940 * 11 10 9 14 14 N 1.31621 * 120.00142 * 5.05909 * 13 11 10 15 15 Si 1.86800 * 119.99970 * 185.06422 * 13 11 10 16 16 H 1.48495 * 109.47407 * 94.98521 * 15 13 11 17 17 H 1.48502 * 109.47346 * 214.98805 * 15 13 11 18 18 H 1.48500 * 109.46966 * 334.98281 * 15 13 11 19 19 C 1.47582 * 91.04997 * 24.55065 * 10 9 8 20 20 N 1.46501 * 109.47045 * 119.99820 * 2 1 3 21 21 C 1.36348 * 125.63486 * 59.69125 * 20 2 1 22 22 C 1.34851 * 108.21666 * 179.83178 * 21 20 2 23 23 C 1.40890 * 107.41845 * 0.42707 * 22 21 20 24 24 C 1.34854 * 107.41695 * 359.73188 * 23 22 21 25 25 H 1.09001 * 109.46943 * 60.00311 * 1 2 3 26 26 H 1.09005 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47587 * 300.00170 * 1 2 3 28 28 H 1.09002 * 109.47196 * 185.00089 * 4 2 1 29 29 H 1.09001 * 109.46911 * 305.00120 * 4 2 1 30 30 H 0.97000 * 119.99847 * 0.02562 * 7 5 4 31 31 H 1.08996 * 112.94206 * 25.33201 * 8 7 5 32 32 H 1.09000 * 113.76970 * 336.34784 * 9 8 7 33 33 H 1.08996 * 113.76617 * 107.75073 * 9 8 7 34 34 H 0.97002 * 119.99935 * 179.97438 * 14 13 11 35 35 H 1.09004 * 113.76679 * 221.15295 * 19 10 9 36 36 H 1.08997 * 113.77153 * 89.75842 * 19 10 9 37 37 H 1.07998 * 125.88758 * 359.96671 * 21 20 2 38 38 H 1.07999 * 126.29164 * 180.16248 * 22 21 20 39 39 H 1.07998 * 126.29457 * 179.73708 * 23 22 21 40 40 H 1.07996 * 125.88951 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0117 1.0872 -2.3633 7 7 1.9854 -0.3916 -3.7001 8 6 1.5983 0.3653 -4.8933 9 6 0.4550 -0.2833 -5.6947 10 7 1.2332 0.0756 -6.8990 11 6 0.9174 0.3075 -8.2111 12 1 1.6740 0.6658 -8.8934 13 6 -0.3752 0.0822 -8.6641 14 7 -1.3206 -0.2582 -7.8139 15 14 -0.7731 0.2619 -10.4804 16 1 -0.6896 -1.0662 -11.1393 17 1 -2.1463 0.8058 -10.6349 18 1 0.2003 1.1894 -11.1109 19 6 2.4862 0.0861 -6.1194 20 7 2.0183 -0.6906 1.1962 21 6 1.7558 -1.9868 1.5279 22 6 2.3798 -2.2586 2.6921 23 6 3.0439 -1.0846 3.0988 24 6 2.8054 -0.1416 2.1647 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1263 -0.7996 -1.2055 29 1 1.6054 -1.7199 -1.2951 30 1 2.4893 -1.2155 -3.7906 31 1 1.4472 1.4260 -4.6931 32 1 0.3616 -1.3576 -5.5360 33 1 -0.4949 0.2446 -5.6106 34 1 -2.2239 -0.4153 -8.1304 35 1 3.1551 0.9083 -6.3738 36 1 2.9908 -0.8795 -6.0858 37 1 1.1539 -2.6773 0.9558 38 1 2.3686 -3.2017 3.2183 39 1 3.6354 -0.9622 3.9941 40 1 3.1739 0.8734 2.1812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665219679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = 48.613092 kcal Electronic energy + Delta-G solvation = -20931.167290 eV Core-core repulsion = 17747.949721 eV Total energy + Delta-G solvation = -3183.217569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.14054 -40.98478 -39.32527 -35.97127 -35.13999 -33.78894 -30.84393 -29.75082 -29.51712 -28.61158 -26.63500 -25.16090 -23.65693 -21.65452 -21.37241 -21.19001 -20.21825 -18.79859 -18.58630 -17.43361 -17.32973 -16.96947 -16.43447 -15.76712 -15.63977 -15.42928 -14.80827 -14.63945 -14.32969 -14.16404 -13.61384 -13.59010 -13.31023 -13.24495 -13.08715 -12.92390 -12.86414 -12.82770 -12.62034 -12.34354 -12.23656 -12.08156 -11.95205 -11.52880 -10.92779 -10.84204 -9.95120 -9.47758 -8.98986 -8.97921 -7.95542 -5.29706 1.43790 1.45068 1.46730 1.55919 1.61291 1.84362 2.22542 2.34934 2.52849 3.22783 3.38898 3.49893 3.73413 3.82976 3.90168 4.16540 4.23169 4.35206 4.46287 4.49422 4.52626 4.54180 4.71934 4.74904 4.78132 4.87398 4.90263 4.97643 5.14312 5.20638 5.27880 5.46965 5.47341 5.51433 5.69864 5.87495 6.17530 6.42316 6.55819 6.60044 6.86401 7.28513 7.56015 8.49427 9.21871 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048888 B = 0.002911 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.603412 B = 9615.370912 C = 9762.921834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.101 0.899 4 C -0.138 4.138 5 C 0.517 3.483 6 O -0.578 6.578 7 N -0.702 5.702 8 C 0.122 3.878 9 C 0.155 3.845 10 N -0.641 5.641 11 C -0.236 4.236 12 H 0.090 0.910 13 C -0.068 4.068 14 N -0.953 5.953 15 Si 0.981 3.019 16 H -0.285 1.285 17 H -0.296 1.296 18 H -0.264 1.264 19 C 0.121 3.879 20 N -0.443 5.443 21 C -0.021 4.021 22 C -0.222 4.222 23 C -0.220 4.220 24 C -0.027 4.027 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.416 0.584 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.174 0.826 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.005 -3.815 18.742 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.119 0.881 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.458 6.458 7 N -0.354 5.354 8 C 0.015 3.985 9 C 0.029 3.971 10 N -0.368 5.368 11 C -0.364 4.364 12 H 0.107 0.893 13 C -0.261 4.261 14 N -0.601 5.601 15 Si 0.809 3.191 16 H -0.212 1.212 17 H -0.223 1.223 18 H -0.189 1.189 19 C -0.005 4.005 20 N -0.119 5.119 21 C -0.150 4.150 22 C -0.246 4.246 23 C -0.245 4.245 24 C -0.157 4.157 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.253 0.747 31 H 0.112 0.888 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.192 0.808 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 9.265 -2.875 18.228 20.649 hybrid contribution -0.515 -0.364 -1.103 1.270 sum 8.750 -3.240 17.126 19.503 Atomic orbital electron populations 1.22207 0.93392 1.03122 1.03296 1.20995 0.95519 0.96523 0.81866 0.88132 1.21949 1.05012 1.00883 0.89973 1.20847 0.78311 0.85234 0.85206 1.90696 1.41446 1.26576 1.87087 1.45882 1.56934 1.27729 1.04848 1.23148 0.96087 0.96461 0.82780 1.22543 0.94860 0.96036 0.83706 1.46056 1.04569 1.81042 1.05118 1.19419 0.95395 1.36969 0.84640 0.89274 1.25729 0.96014 1.02074 1.02322 1.70041 1.01315 1.54327 1.34462 0.85026 0.77023 0.77713 0.79383 1.21238 1.22316 1.18879 1.23021 0.89967 1.00052 0.87427 1.44400 1.39033 1.10428 1.18005 1.22107 1.06499 0.86501 0.99921 1.21163 1.04998 0.99926 0.98518 1.21155 1.07359 0.94188 1.01770 1.22221 1.01355 1.00589 0.91496 0.90767 0.91370 0.92133 0.86068 0.86158 0.74686 0.88818 0.95560 0.95347 0.94232 0.91819 0.91679 0.80836 0.83952 0.83933 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.97 71.98 0.65 -2.76 16 2 C 0.15 2.88 2.67 44.99 0.12 3.00 16 3 H 0.10 2.02 7.87 -2.39 -0.02 2.01 16 4 C -0.14 -2.30 5.17 29.85 0.15 -2.15 16 5 C 0.52 13.25 7.55 87.66 0.66 13.91 16 6 O -0.58 -19.77 13.59 -3.04 -0.04 -19.81 16 7 N -0.70 -18.18 5.37 -447.38 -2.40 -20.58 16 8 C 0.12 4.40 4.40 46.75 0.21 4.61 16 9 C 0.16 7.35 7.24 86.44 0.63 7.98 16 10 N -0.64 -32.23 3.70 -716.67 -2.65 -34.88 16 11 C -0.24 -13.11 10.70 84.03 0.90 -12.21 16 12 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 13 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 14 N -0.95 -58.09 11.51 21.65 0.25 -57.84 16 15 Si 0.98 45.51 29.56 68.60 2.03 47.54 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 19 C 0.12 4.42 8.69 86.48 0.75 5.17 16 20 N -0.44 -8.17 2.62 -502.00 -1.31 -9.49 16 21 C -0.02 -0.37 10.45 83.21 0.87 0.50 16 22 C -0.22 -4.16 10.86 22.14 0.24 -3.92 16 23 C -0.22 -4.16 10.86 22.14 0.24 -3.92 16 24 C -0.03 -0.50 11.39 83.21 0.95 0.45 16 25 H 0.07 1.97 5.95 -2.39 -0.01 1.96 16 26 H 0.07 1.27 7.91 -2.38 -0.02 1.25 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.12 1.60 8.06 -2.39 -0.02 1.58 16 30 H 0.42 7.89 8.71 -92.71 -0.81 7.08 16 31 H 0.09 3.78 7.51 -2.39 -0.02 3.76 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 1.57 7.37 -2.39 -0.02 1.56 16 34 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 37 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -71.80 334.54 2.92 -68.88 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.22 Total: 18.94 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.83 Total: 7.24 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -6.12 Total: -122.79 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.04 Total: -19.81 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -71.80 2.92 -68.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665219679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.493 kcal (2) G-P(sol) polarization free energy of solvation -71.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds