Wall clock time and date at job start Mon Mar 30 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47044 * 2 1 4 4 C 1.53004 * 109.47118 * 119.99572 * 2 1 3 5 5 C 1.50697 * 109.47092 * 295.00345 * 4 2 1 6 6 O 1.21282 * 120.00246 * 359.97438 * 5 4 2 7 7 N 1.34779 * 119.99930 * 179.97438 * 5 4 2 8 8 C 1.46497 * 120.00102 * 180.02562 * 7 5 4 9 9 C 1.53952 * 113.73797 * 253.74088 * 8 7 5 10 10 N 1.47814 * 86.03411 * 222.08464 * 9 8 7 11 11 C 1.36938 * 134.45498 * 204.64599 * 10 9 8 12 12 H 1.07997 * 120.00228 * 179.85858 * 11 10 9 13 13 C 1.38820 * 120.00029 * 359.86422 * 11 10 9 14 14 N 1.31620 * 119.99695 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00106 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47166 * 59.99480 * 15 13 11 17 17 H 1.48497 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46995 * 299.99857 * 15 13 11 19 19 C 1.47573 * 91.05433 * 24.54489 * 10 9 8 20 20 N 1.46492 * 109.47396 * 239.99912 * 2 1 3 21 21 C 1.36343 * 125.63672 * 120.00059 * 20 2 1 22 22 C 1.34854 * 108.21624 * 179.76945 * 21 20 2 23 23 C 1.40882 * 107.41837 * 0.22622 * 22 21 20 24 24 C 1.34845 * 107.41854 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47652 * 300.00431 * 1 2 3 27 27 H 1.09003 * 109.47189 * 60.00206 * 1 2 3 28 28 H 1.09003 * 109.46915 * 54.99961 * 4 2 1 29 29 H 1.08993 * 109.47192 * 175.00297 * 4 2 1 30 30 H 0.97001 * 119.99635 * 359.97438 * 7 5 4 31 31 H 1.09000 * 112.94622 * 25.32610 * 8 7 5 32 32 H 1.09000 * 113.76757 * 336.34080 * 9 8 7 33 33 H 1.08993 * 113.77166 * 107.74659 * 9 8 7 34 34 H 0.96999 * 119.99280 * 180.02562 * 14 13 11 35 35 H 1.09002 * 113.77429 * 221.15339 * 19 10 9 36 36 H 1.09005 * 113.76660 * 89.75409 * 19 10 9 37 37 H 1.08002 * 125.89310 * 0.03699 * 21 20 2 38 38 H 1.08007 * 126.28715 * 180.22692 * 22 21 20 39 39 H 1.08010 * 126.28983 * 180.02562 * 23 22 21 40 40 H 1.08000 * 125.89155 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4766 6 8 1.0115 1.0875 2.3632 7 7 1.9843 -0.3917 3.7002 8 6 1.5962 0.3646 4.8933 9 6 2.7644 1.1148 5.5587 10 7 2.1925 0.6569 6.8425 11 6 2.2457 1.1122 8.1329 12 1 1.7222 0.5820 8.9147 13 6 2.9724 2.2555 8.4360 14 7 3.6107 2.9014 7.4833 15 14 3.0456 2.8763 10.1963 16 1 3.6425 1.8307 11.0656 17 1 3.8802 4.1032 10.2542 18 1 1.6727 3.1881 10.6687 19 6 1.5395 -0.4860 6.1752 20 7 2.0183 -0.6906 -1.1961 21 6 2.8055 -0.1416 -2.1645 22 6 3.0483 -1.0861 -3.0960 23 6 2.3826 -2.2595 -2.6903 24 6 1.7587 -1.9877 -1.5261 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.6053 -1.7197 1.2953 29 1 3.1262 -0.7994 1.2057 30 1 2.4876 -1.2160 3.7909 31 1 0.7113 0.9813 4.7363 32 1 3.7430 0.6891 5.3371 33 1 2.7280 2.1954 5.4208 34 1 4.1188 3.7001 7.6953 35 1 0.5269 -0.6811 6.5285 36 1 2.1576 -1.3829 6.1350 37 1 3.1748 0.8731 -2.1806 38 1 3.6438 -0.9651 -3.9889 39 1 2.3742 -3.2037 -3.2148 40 1 1.1597 -2.6793 -0.9522 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665219680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:52 Heat of formation + Delta-G solvation = 48.938233 kcal Electronic energy + Delta-G solvation = -20918.781303 eV Core-core repulsion = 17735.577834 eV Total energy + Delta-G solvation = -3183.203470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14257 -40.98498 -39.32569 -35.97015 -35.13962 -33.78178 -30.84445 -29.74515 -29.52087 -28.60705 -26.62936 -25.15693 -23.65570 -21.65370 -21.37157 -21.19467 -20.21913 -18.81165 -18.58378 -17.43007 -17.27778 -16.97651 -16.50605 -15.75148 -15.63798 -15.37027 -14.90913 -14.60152 -14.28720 -14.16796 -13.66013 -13.52545 -13.35076 -13.21811 -13.09060 -12.90556 -12.82958 -12.81384 -12.60452 -12.34232 -12.28157 -12.07503 -11.96251 -11.53069 -10.90479 -10.85908 -9.94831 -9.47837 -8.99183 -8.98841 -7.93725 -5.28933 1.43498 1.44907 1.48546 1.54712 1.61729 1.84143 2.22411 2.35226 2.52953 3.24564 3.38422 3.49406 3.74789 3.83505 3.89372 4.16756 4.23596 4.35625 4.46073 4.49509 4.52134 4.55091 4.72126 4.74310 4.79105 4.88049 4.90384 4.98212 5.14180 5.21481 5.28781 5.46866 5.47085 5.51199 5.70374 5.88216 6.17311 6.41829 6.56151 6.60077 6.86584 7.28711 7.56755 8.49375 9.22792 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045044 B = 0.002916 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.467431 B = 9599.494318 C = 9736.123090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.151 3.849 3 H 0.093 0.907 4 C -0.137 4.137 5 C 0.517 3.483 6 O -0.578 6.578 7 N -0.702 5.702 8 C 0.123 3.877 9 C 0.151 3.849 10 N -0.640 5.640 11 C -0.236 4.236 12 H 0.090 0.910 13 C -0.070 4.070 14 N -0.955 5.955 15 Si 0.983 3.017 16 H -0.274 1.274 17 H -0.296 1.296 18 H -0.275 1.275 19 C 0.122 3.878 20 N -0.443 5.443 21 C -0.031 4.031 22 C -0.220 4.220 23 C -0.222 4.222 24 C -0.017 4.017 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.416 0.584 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.031 0.969 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 -12.444 -17.758 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.111 0.889 4 C -0.178 4.178 5 C 0.304 3.696 6 O -0.458 6.458 7 N -0.354 5.354 8 C 0.016 3.984 9 C 0.024 3.976 10 N -0.368 5.368 11 C -0.365 4.365 12 H 0.108 0.892 13 C -0.263 4.263 14 N -0.604 5.604 15 Si 0.810 3.190 16 H -0.200 1.200 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.004 4.004 20 N -0.119 5.119 21 C -0.161 4.161 22 C -0.244 4.244 23 C -0.247 4.247 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.131 0.869 30 H 0.253 0.747 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.186 0.814 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.044 -11.346 -17.263 21.050 hybrid contribution 0.719 0.486 0.991 1.317 sum -3.325 -10.860 -16.272 19.843 Atomic orbital electron populations 1.22191 0.92760 1.03406 1.03345 1.21012 0.96006 0.96274 0.81883 0.88905 1.21946 1.04692 1.01199 0.89934 1.20854 0.78321 0.85213 0.85226 1.90697 1.41875 1.26236 1.87025 1.45878 1.56918 1.27707 1.04867 1.23123 0.98005 0.94278 0.82987 1.22609 0.93874 0.97646 0.83486 1.46063 1.58516 1.28262 1.03919 1.19397 1.26067 1.06871 0.84123 0.89214 1.25721 0.99980 0.98571 1.01990 1.70029 1.37227 1.20201 1.32916 0.85092 0.77665 0.77190 0.79026 1.19964 1.22255 1.20066 1.23020 0.97543 0.91311 0.88492 1.44400 1.39071 1.10494 1.17912 1.22191 1.01556 1.00546 0.91819 1.21154 1.07214 0.94287 1.01792 1.21168 1.05011 0.99835 0.98673 1.22151 1.06445 0.86284 0.99782 0.90758 0.90496 0.92328 0.85273 0.86894 0.74672 0.88834 0.95734 0.95004 0.94283 0.91733 0.91613 0.81399 0.84084 0.83780 0.80259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.97 71.98 0.65 -2.39 16 2 C 0.15 2.86 2.67 44.99 0.12 2.98 16 3 H 0.09 2.04 7.88 -2.39 -0.02 2.02 16 4 C -0.14 -2.29 5.17 29.85 0.15 -2.14 16 5 C 0.52 13.29 7.55 87.66 0.66 13.95 16 6 O -0.58 -19.89 13.59 -3.04 -0.04 -19.93 16 7 N -0.70 -18.18 5.37 -447.38 -2.40 -20.59 16 8 C 0.12 4.45 4.40 46.75 0.21 4.66 16 9 C 0.15 7.18 7.33 86.44 0.63 7.82 16 10 N -0.64 -32.29 3.70 -716.68 -2.65 -34.94 16 11 C -0.24 -13.15 10.70 84.04 0.90 -12.25 16 12 H 0.09 4.68 7.83 -2.91 -0.02 4.66 16 13 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 14 N -0.96 -58.55 11.39 21.65 0.25 -58.31 16 15 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.12 4.44 8.69 86.49 0.75 5.19 16 20 N -0.44 -8.28 2.62 -502.02 -1.31 -9.60 16 21 C -0.03 -0.62 11.39 83.21 0.95 0.33 16 22 C -0.22 -4.31 10.86 22.14 0.24 -4.07 16 23 C -0.22 -4.12 10.86 22.14 0.24 -3.88 16 24 C -0.02 -0.29 10.45 83.21 0.87 0.58 16 25 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 26 H 0.08 1.83 5.95 -2.39 -0.01 1.82 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.13 1.43 8.06 -2.39 -0.02 1.41 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.42 7.85 8.71 -92.71 -0.81 7.04 16 31 H 0.09 3.79 7.51 -2.39 -0.02 3.77 16 32 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.03 1.79 7.17 -2.39 -0.02 1.77 16 34 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.06 8.11 -2.38 -0.02 2.04 16 37 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.45 334.31 2.92 -69.52 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.22 Total: 18.91 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.84 Total: 7.25 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -6.12 Total: -123.43 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.04 Total: -19.93 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -72.45 2.92 -69.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665219680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.463 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds