Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47513 * 2 1 4 4 C 1.52999 * 109.47232 * 119.99946 * 2 1 3 5 5 C 1.53003 * 109.47410 * 185.00085 * 4 2 1 6 6 N 1.46503 * 109.47168 * 179.97438 * 5 4 2 7 7 C 1.36936 * 119.99915 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99738 * 359.97438 * 7 6 5 9 9 C 1.38807 * 120.00018 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99900 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00166 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47020 * 89.99615 * 11 9 7 13 13 H 1.48499 * 109.47285 * 209.99771 * 11 9 7 14 14 H 1.48493 * 109.47081 * 329.99933 * 11 9 7 15 15 N 1.46504 * 109.47346 * 239.99608 * 2 1 3 16 16 C 1.34774 * 119.99752 * 84.99832 * 15 2 1 17 17 O 1.21278 * 120.00359 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99826 * 180.02562 * 16 15 2 19 19 C 1.50706 * 109.47336 * 180.02562 * 18 16 15 20 20 C 1.38675 * 120.41529 * 89.99890 * 19 18 16 21 21 C 1.38631 * 118.41792 * 179.97438 * 20 19 18 22 22 C 1.38221 * 119.16077 * 0.25627 * 21 20 19 23 23 N 1.31860 * 120.76509 * 359.49797 * 22 21 20 24 24 C 1.31882 * 121.72556 * 0.49011 * 23 22 21 25 25 H 1.08998 * 109.47199 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47033 * 300.00410 * 1 2 3 27 27 H 1.09000 * 109.46661 * 60.00113 * 1 2 3 28 28 H 1.09003 * 109.46872 * 304.99915 * 4 2 1 29 29 H 1.09002 * 109.47176 * 64.99895 * 4 2 1 30 30 H 1.09000 * 109.46549 * 299.99466 * 5 4 2 31 31 H 1.08996 * 109.47367 * 59.99437 * 5 4 2 32 32 H 0.96998 * 119.99603 * 359.97438 * 6 5 4 33 33 H 0.97008 * 119.99913 * 180.02562 * 10 9 7 34 34 H 0.96993 * 120.00109 * 265.00608 * 15 2 1 35 35 H 1.09008 * 109.47420 * 60.00074 * 18 16 15 36 36 H 1.08998 * 109.47517 * 300.00013 * 18 16 15 37 37 H 1.07998 * 120.79161 * 359.96013 * 20 19 18 38 38 H 1.08002 * 120.41548 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.62066 * 179.74470 * 22 21 20 40 40 H 1.07993 * 119.62126 * 179.75488 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 7 4.0531 -1.3034 2.5103 7 6 5.3952 -1.3401 2.7797 8 1 6.0938 -0.8606 2.1099 9 6 5.8579 -1.9944 3.9131 10 7 5.0066 -2.5791 4.7290 11 14 7.6886 -2.0438 4.2812 12 1 8.0585 -0.8693 5.1112 13 1 8.0119 -3.2921 5.0177 14 1 8.4507 -2.0093 3.0072 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8590 1.1584 -2.4116 18 6 2.6489 -0.7290 -3.5876 19 6 2.7003 0.2394 -4.7412 20 6 3.8477 0.9786 -4.9867 21 6 3.8497 1.8569 -6.0593 22 6 2.7144 1.9698 -6.8396 23 7 1.6425 1.2473 -6.5792 24 6 1.6049 0.4017 -5.5678 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 3.9994 -1.0729 0.4260 31 1 3.8533 0.4369 1.3573 32 1 3.4257 -1.7343 3.1115 33 1 5.3299 -3.0360 5.5213 34 1 2.2490 -1.6318 -1.1525 35 1 1.9760 -1.5509 -3.8325 36 1 3.6480 -1.1215 -3.3986 37 1 4.7188 0.8728 -4.3572 38 1 4.7258 2.4488 -6.2797 39 1 2.7064 2.6548 -7.6745 40 1 0.7077 -0.1702 -5.3833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668029723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = -28.230129 kcal Electronic energy + Delta-G solvation = -20579.462701 eV Core-core repulsion = 17392.912960 eV Total energy + Delta-G solvation = -3186.549741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40398 -40.42859 -37.86752 -36.09061 -34.54676 -33.57941 -32.85034 -32.06664 -29.45622 -28.71263 -25.88285 -24.49667 -23.94666 -23.11353 -21.92880 -21.36056 -19.22057 -18.13063 -17.97011 -17.41591 -17.23877 -16.68245 -16.09082 -15.87205 -15.48399 -15.21885 -15.15850 -14.89065 -14.46480 -14.25637 -14.15120 -13.93861 -13.72224 -13.14623 -12.98850 -12.89518 -12.88713 -12.44867 -12.35221 -12.25731 -11.99403 -11.91942 -11.63423 -11.03076 -10.94513 -10.66139 -10.40659 -10.04113 -9.88585 -9.01296 -7.96664 -5.25659 0.16827 0.36901 1.47385 1.48972 1.57340 1.69557 2.27123 2.55131 2.93439 3.37269 3.51960 3.63405 3.74641 3.93572 4.04230 4.07449 4.10650 4.13536 4.18419 4.40672 4.49997 4.56966 4.60001 4.67285 4.77688 4.78436 4.86395 4.90510 5.01730 5.19919 5.23616 5.27844 5.32750 5.34750 5.48079 5.60781 5.80018 6.26098 6.62518 7.03625 7.31896 7.32594 8.08156 8.31658 9.26753 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.003217 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.687985 B = 8700.860307 C = 9694.955728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.153 3.847 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.746 5.746 7 C -0.248 4.248 8 H 0.073 0.927 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.972 3.028 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.268 1.268 15 N -0.713 5.713 16 C 0.514 3.486 17 O -0.583 6.583 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.078 4.078 21 C -0.173 4.173 22 C 0.080 3.920 23 N -0.514 5.514 24 C 0.094 3.906 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.004 0.996 32 H 0.375 0.625 33 H 0.252 0.748 34 H 0.414 0.586 35 H 0.137 0.863 36 H 0.127 0.873 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.556 3.241 -21.009 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.047 3.953 3 H 0.082 0.918 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.380 4.380 8 H 0.091 0.909 9 C -0.266 4.266 10 N -0.619 5.619 11 Si 0.801 3.199 12 H -0.216 1.216 13 H -0.220 1.220 14 H -0.193 1.193 15 N -0.365 5.365 16 C 0.301 3.699 17 O -0.463 6.463 18 C -0.133 4.133 19 C -0.126 4.126 20 C -0.104 4.104 21 C -0.192 4.192 22 C -0.076 4.076 23 N -0.223 5.223 24 C -0.062 4.062 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.046 0.954 31 H 0.022 0.978 32 H 0.207 0.793 33 H 0.061 0.939 34 H 0.251 0.749 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.194 0.806 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.323 4.200 -21.621 23.211 hybrid contribution 1.574 -0.532 1.431 2.193 sum -5.749 3.668 -20.190 21.311 Atomic orbital electron populations 1.22070 0.93823 1.02978 1.02190 1.20759 0.94685 0.96260 0.83579 0.91774 1.21893 0.94621 1.01803 0.97344 1.20764 0.93458 0.94053 0.88926 1.42579 1.04488 1.65339 1.26519 1.19608 0.85297 1.27643 1.05412 0.90945 1.25557 1.02014 1.01215 0.97830 1.69805 1.34637 1.41922 1.15532 0.85157 0.80138 0.76625 0.77953 1.21599 1.21963 1.19320 1.46068 1.66659 1.14757 1.08996 1.20992 0.76798 0.86898 0.85168 1.90706 1.51873 1.17985 1.85719 1.20676 1.06306 0.97760 0.88589 1.20509 0.95313 0.99345 0.97399 1.21822 0.98357 0.93762 0.96414 1.22438 1.00908 0.99778 0.96077 1.23211 0.88500 0.96578 0.99328 1.67672 1.28997 1.06826 1.18811 1.22863 0.97825 0.95134 0.90389 0.90910 0.90975 0.93282 0.90539 0.90104 0.95413 0.97801 0.79281 0.93903 0.74922 0.84514 0.85494 0.83746 0.82261 0.80634 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.48 71.98 0.68 -2.55 16 2 C 0.15 3.80 2.57 44.99 0.12 3.92 16 3 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 4 C -0.12 -3.38 4.87 30.60 0.15 -3.23 16 5 C 0.15 5.89 6.15 86.38 0.53 6.42 16 6 N -0.75 -37.10 5.60 -343.45 -1.92 -39.02 16 7 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 11 Si 0.97 45.47 29.55 68.60 2.03 47.50 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 N -0.71 -15.03 4.53 -442.54 -2.00 -17.03 16 16 C 0.51 11.82 7.79 87.66 0.68 12.50 16 17 O -0.58 -18.81 15.70 -3.02 -0.05 -18.85 16 18 C -0.09 -1.41 5.86 29.10 0.17 -1.23 16 19 C -0.12 -2.41 4.39 -19.77 -0.09 -2.50 16 20 C -0.08 -1.47 9.86 22.47 0.22 -1.25 16 21 C -0.17 -2.94 10.11 22.36 0.23 -2.71 16 22 C 0.08 1.52 11.18 84.68 0.95 2.46 16 23 N -0.51 -12.02 10.36 -195.85 -2.03 -14.05 16 24 C 0.09 2.01 10.86 84.67 0.92 2.93 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.38 19.63 7.67 -92.71 -0.71 18.92 16 33 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 34 H 0.41 6.81 8.60 -92.71 -0.80 6.02 16 35 H 0.14 1.21 8.10 -2.38 -0.02 1.20 16 36 H 0.13 1.44 8.09 -2.39 -0.02 1.42 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -74.34 343.75 1.70 -72.64 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.47 Total: 28.81 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.87 Total: -1.85 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.68 Total: -128.25 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.34 1.70 -72.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668029723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.409 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds