Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47145 * 2 1 4 4 N 1.46498 * 109.46768 * 240.00509 * 2 1 3 5 5 C 1.36939 * 120.00056 * 84.99818 * 4 2 1 6 6 H 1.07997 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31614 * 120.00155 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99581 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47323 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47110 * 120.00342 * 9 7 5 12 12 H 1.48501 * 109.46945 * 239.99876 * 9 7 5 13 13 C 1.52998 * 109.47567 * 120.00529 * 2 1 3 14 14 H 1.09005 * 110.91538 * 57.54772 * 13 2 1 15 15 C 1.55157 * 111.00108 * 293.65031 * 13 2 1 16 16 C 1.54320 * 102.85908 * 206.22756 * 15 13 2 17 17 N 1.47025 * 107.27762 * 22.52351 * 16 15 13 18 18 C 1.34775 * 125.64842 * 180.96774 * 17 16 15 19 19 O 1.21628 * 119.99847 * 179.69438 * 18 17 16 20 20 C 1.47266 * 120.00122 * 359.69515 * 18 17 16 21 21 C 1.46680 * 126.94278 * 179.97438 * 20 18 17 22 22 C 1.34485 * 106.33156 * 179.73769 * 21 20 18 23 23 N 1.36446 * 108.85999 * 0.24050 * 22 21 20 24 24 H 0.96998 * 124.85436 * 179.97438 * 23 22 21 25 25 C 1.34665 * 110.29435 * 359.97438 * 23 22 21 26 26 C 1.47425 * 108.70085 * 0.70673 * 17 16 15 27 27 H 1.09003 * 109.46540 * 299.99300 * 1 2 3 28 28 H 1.09001 * 109.47439 * 59.99078 * 1 2 3 29 29 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 30 30 H 0.97002 * 120.00196 * 264.99412 * 4 2 1 31 31 H 0.97006 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.08993 * 110.72304 * 324.77936 * 15 13 2 33 33 H 1.08993 * 110.72244 * 87.88331 * 15 13 2 34 34 H 1.09001 * 109.98717 * 263.04573 * 16 15 13 35 35 H 1.08999 * 109.77526 * 141.89000 * 16 15 13 36 36 H 1.08002 * 126.83670 * 0.02562 * 21 20 18 37 37 H 1.08003 * 125.57269 * 180.23948 * 22 21 20 38 38 H 1.07999 * 125.79966 * 179.97438 * 25 23 22 39 39 H 1.08997 * 110.36872 * 94.93613 * 26 17 16 40 40 H 1.09001 * 110.36273 * 217.15026 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1489 -0.0073 -2.3758 6 1 1.8925 1.0407 -2.4241 7 6 2.6121 -0.6615 -3.5091 8 7 2.9251 -1.9385 -3.4502 9 14 2.7910 0.2708 -5.1180 10 1 2.3772 1.6831 -4.9205 11 1 4.2082 0.2279 -5.5600 12 1 1.9308 -0.3577 -6.1525 13 6 2.0401 -0.7213 1.2491 14 1 1.6547 -1.7400 1.2949 15 6 1.6777 0.0686 2.5344 16 6 2.7746 -0.3693 3.5275 17 7 3.9166 -0.8468 2.7341 18 6 5.0704 -1.3338 3.2322 19 8 5.9489 -1.7067 2.4782 20 6 5.2673 -1.4146 4.6894 21 6 6.4533 -1.9155 5.3923 22 6 6.1927 -1.7963 6.7062 23 7 4.9438 -1.2692 6.8621 24 1 4.5222 -1.0858 7.7162 25 6 4.3803 -1.0398 5.6607 26 6 3.5882 -0.7104 1.3034 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 2.2490 -1.6317 -1.1528 31 1 3.2484 -2.3957 -4.2423 32 1 1.7232 1.1424 2.3529 33 1 0.6910 -0.2181 2.8980 34 1 2.4027 -1.1732 4.1628 35 1 3.0779 0.4797 4.1401 36 1 7.3579 -2.2989 4.9439 37 1 6.8624 -2.0726 7.5072 38 1 3.3966 -0.6270 5.4928 39 1 3.9748 0.2312 0.9135 40 1 3.9952 -1.5495 0.7391 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672202830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = 30.254678 kcal Electronic energy + Delta-G solvation = -21402.504006 eV Core-core repulsion = 18218.490357 eV Total energy + Delta-G solvation = -3184.013649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27490 -39.46326 -37.41888 -35.12580 -32.48713 -31.19383 -30.40477 -29.73328 -28.35641 -27.79328 -24.26033 -23.86693 -21.62241 -21.41839 -20.67865 -19.59688 -19.51682 -17.84254 -17.02338 -16.31925 -15.90116 -15.01040 -14.75933 -14.34179 -14.00443 -13.96346 -13.60036 -13.54699 -13.15477 -12.98002 -12.53189 -12.52868 -12.31669 -11.99269 -11.94529 -11.38964 -11.29424 -10.85129 -10.73361 -10.53817 -10.47422 -10.14999 -9.84448 -9.63438 -9.55832 -8.95929 -8.86463 -8.54171 -8.32242 -6.90535 -5.70165 -2.99164 1.73059 2.34263 2.98763 3.32804 3.48081 3.53254 3.55892 3.71473 4.58804 4.67876 4.72787 4.77493 4.91326 4.99911 5.13008 5.29971 5.39078 5.49431 5.60952 5.70301 5.78803 5.91872 5.92320 5.93649 5.98744 6.11770 6.22203 6.42313 6.45464 6.46883 6.59219 6.66903 6.73509 6.75715 6.89473 7.11481 7.23520 7.75957 7.83508 8.47765 8.55359 9.59193 10.16386 10.50718 11.52398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.003867 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.636961 B = 7239.148898 C = 8021.093664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.293 1.293 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.126 4.126 16 C 0.096 3.904 17 N -0.617 5.617 18 C 0.597 3.403 19 O -0.542 6.542 20 C -0.219 4.219 21 C -0.142 4.142 22 C -0.026 4.026 23 N -0.555 5.555 24 H 0.415 0.585 25 C 0.029 3.971 26 C 0.122 3.878 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.384 0.616 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.147 0.853 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.070 0.930 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 3.139 24.312 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.164 4.164 16 C -0.027 4.027 17 N -0.351 5.351 18 C 0.387 3.613 19 O -0.420 6.420 20 C -0.229 4.229 21 C -0.167 4.167 22 C -0.154 4.154 23 N -0.150 5.150 24 H 0.251 0.749 25 C -0.106 4.106 26 C 0.001 3.999 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.186 0.814 38 H 0.199 0.801 39 H 0.089 0.911 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.586 3.051 23.906 24.107 hybrid contribution -0.092 0.204 -0.513 0.559 sum -0.678 3.255 23.394 23.629 Atomic orbital electron populations 1.22439 0.99166 1.00844 0.99908 1.20156 0.91838 0.95158 0.85425 0.93337 1.42428 1.78129 1.10754 1.05268 1.19242 1.36544 0.93819 0.87282 0.91196 1.24732 1.02165 0.95952 0.98029 1.69670 1.50812 1.08647 1.28728 0.86160 0.77317 0.78761 0.84201 1.20620 1.21898 1.21990 1.22671 0.94309 1.00196 0.95025 0.90146 1.22702 0.97560 1.01093 0.95062 1.22276 0.87267 0.98182 0.94971 1.48407 1.15016 1.63210 1.08501 1.17071 0.80615 0.76932 0.86685 1.90798 1.41860 1.49252 1.60069 1.20519 0.97336 1.12987 0.92075 1.21992 0.98622 1.04380 0.91670 1.21794 0.88214 1.07175 0.98195 1.41646 1.14598 1.50534 1.08201 0.74873 1.22723 0.99774 1.03960 0.84157 1.22223 0.94829 1.03094 0.79801 0.94460 0.92808 0.93535 0.78230 0.93580 0.90307 0.90138 0.91541 0.91609 0.83478 0.81418 0.80099 0.91136 0.89797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.34 37.16 0.35 -2.43 16 2 C 0.18 3.49 2.40 -67.93 -0.16 3.32 16 3 H 0.05 0.94 8.05 -51.93 -0.42 0.52 16 4 N -0.72 -17.86 4.82 -53.43 -0.26 -18.12 16 5 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 9 Si 0.90 22.73 29.55 -169.99 -5.02 17.70 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C -0.10 -1.61 2.62 -88.47 -0.23 -1.84 16 14 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 15 C -0.13 -1.41 5.59 -24.90 -0.14 -1.55 16 16 C 0.10 1.04 4.99 -3.06 -0.02 1.02 16 17 N -0.62 -9.66 3.33 -171.85 -0.57 -10.23 16 18 C 0.60 10.52 7.84 -12.59 -0.10 10.42 16 19 O -0.54 -12.01 17.22 5.25 0.09 -11.92 16 20 C -0.22 -3.01 6.26 -103.35 -0.65 -3.66 16 21 C -0.14 -1.75 10.97 -37.50 -0.41 -2.16 16 22 C -0.03 -0.22 11.89 -16.83 -0.20 -0.42 16 23 N -0.55 -3.89 5.90 -12.85 -0.08 -3.96 16 24 H 0.42 1.30 8.96 -40.82 -0.37 0.94 16 25 C 0.03 0.27 10.42 -16.84 -0.18 0.10 16 26 C 0.12 2.21 6.09 -2.53 -0.02 2.19 16 27 H 0.04 0.50 7.50 -51.93 -0.39 0.11 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.38 10.23 7.80 -40.82 -0.32 9.91 16 31 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 33 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.07 0.59 6.89 -51.93 -0.36 0.24 16 35 H 0.07 0.57 7.02 -51.93 -0.36 0.21 16 36 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.18 1.23 4.42 -52.49 -0.23 1.00 16 39 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 40 H 0.08 1.80 8.03 -51.93 -0.42 1.38 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -35.71 328.57 -7.94 -43.65 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.78 Total: 7.95 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.00 Total: -2.19 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.18 Total: -60.14 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.71 -7.94 -43.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672202830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.900 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds