Wall clock time and date at job start Mon Mar 30 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47121 * 2 1 4 4 N 1.46506 * 109.46557 * 239.99875 * 2 1 3 5 5 C 1.36940 * 119.99762 * 85.00538 * 4 2 1 6 6 H 1.08004 * 119.99989 * 359.97438 * 5 4 2 7 7 C 1.38805 * 120.00131 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99813 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00304 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47428 * 89.99918 * 9 7 5 11 11 H 1.48500 * 109.47381 * 210.00113 * 9 7 5 12 12 H 1.48503 * 109.46848 * 329.99709 * 9 7 5 13 13 C 1.52992 * 109.47185 * 120.00374 * 2 1 3 14 14 H 1.08998 * 110.89257 * 60.79228 * 13 2 1 15 15 C 1.55157 * 111.00670 * 184.71830 * 13 2 1 16 16 C 1.54322 * 102.94422 * 153.57158 * 15 13 2 17 17 N 1.47020 * 107.27290 * 337.80939 * 16 15 13 18 18 C 1.34773 * 125.64925 * 178.90210 * 17 16 15 19 19 O 1.21628 * 120.00334 * 180.02562 * 18 17 16 20 20 C 1.47268 * 120.00017 * 0.04322 * 18 17 16 21 21 C 1.46685 * 126.94204 * 179.97438 * 20 18 17 22 22 C 1.34493 * 106.33171 * 180.02562 * 21 20 18 23 23 N 1.36448 * 108.85578 * 359.97438 * 22 21 20 24 24 H 0.97002 * 124.85266 * 179.97438 * 23 22 21 25 25 C 1.34665 * 110.29658 * 359.73369 * 23 22 21 26 26 C 1.47423 * 108.70281 * 358.93757 * 17 16 15 27 27 H 1.09005 * 109.47023 * 305.22114 * 1 2 3 28 28 H 1.09005 * 109.46906 * 185.22556 * 1 2 3 29 29 H 1.08992 * 109.47346 * 65.22241 * 1 2 3 30 30 H 0.96994 * 120.00224 * 264.99474 * 4 2 1 31 31 H 0.97002 * 119.99826 * 180.02562 * 8 7 5 32 32 H 1.08997 * 110.71968 * 271.94406 * 15 13 2 33 33 H 1.09003 * 110.71830 * 35.21022 * 15 13 2 34 34 H 1.08999 * 109.88287 * 218.38855 * 16 15 13 35 35 H 1.09001 * 109.88120 * 97.23034 * 16 15 13 36 36 H 1.07993 * 126.83596 * 359.96683 * 21 20 18 37 37 H 1.07996 * 125.56891 * 179.97438 * 22 21 20 38 38 H 1.08001 * 125.79631 * 180.29731 * 25 23 22 39 39 H 1.08996 * 110.37197 * 265.29060 * 26 17 16 40 40 H 1.09006 * 110.46026 * 143.01030 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4244 7 6 2.6121 -0.6617 -3.5091 8 7 2.9260 -1.9386 -3.4498 9 14 2.7899 0.2700 -5.1183 10 1 4.1517 0.8560 -5.2033 11 1 2.5800 -0.6616 -6.2556 12 1 1.7791 1.3564 -5.1755 13 6 2.0400 -0.7213 1.2491 14 1 1.7011 -1.7571 1.2655 15 6 3.5864 -0.6397 1.3461 16 6 3.8445 -0.7603 2.8628 17 7 2.6073 -0.3607 3.5493 18 6 2.4180 -0.3493 4.8836 19 8 1.3478 0.0014 5.3430 20 6 3.5070 -0.7610 5.7854 21 6 3.4683 -0.8062 7.2511 22 6 4.6783 -1.2389 7.6481 23 7 5.4507 -1.4615 6.5456 24 1 6.3675 -1.7778 6.5657 25 6 4.7567 -1.1843 5.4253 26 6 1.6080 0.0246 2.5363 27 1 -0.3633 0.5927 0.8396 28 1 -0.3633 -1.0234 0.0936 29 1 -0.3633 0.4307 -0.9330 30 1 2.2490 -1.6318 -1.1527 31 1 3.2499 -2.3957 -4.2417 32 1 4.0507 -1.4667 0.8088 33 1 3.9465 0.3174 0.9686 34 1 4.6603 -0.0986 3.1538 35 1 4.0925 -1.7912 3.1158 36 1 2.6346 -0.5435 7.8852 37 1 4.9879 -1.3860 8.6723 38 1 5.1253 -1.2776 4.4145 39 1 1.6275 1.1024 2.3748 40 1 0.6118 -0.2943 2.8432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672202831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:47 Heat of formation + Delta-G solvation = 5.552465 kcal Electronic energy + Delta-G solvation = -21306.435224 eV Core-core repulsion = 18121.350406 eV Total energy + Delta-G solvation = -3185.084818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09980 -40.66591 -38.81373 -36.76234 -34.27070 -32.36225 -31.50648 -30.94215 -30.17344 -28.47431 -26.33196 -25.13310 -22.94294 -22.46060 -21.51248 -21.04870 -20.48510 -19.11310 -18.65376 -17.48388 -17.38898 -16.49463 -16.13334 -15.56086 -15.41474 -15.00085 -14.80633 -14.66114 -14.58334 -14.04647 -13.85305 -13.81739 -13.66055 -13.38574 -13.17760 -13.06721 -12.77312 -12.63866 -12.26105 -12.14862 -11.94307 -11.62131 -11.52864 -11.35153 -11.03268 -10.88316 -9.88533 -9.54476 -9.29510 -8.95070 -7.88762 -5.15541 0.77816 1.50724 1.51373 1.55755 1.59352 1.99586 2.50330 2.55589 2.60389 3.43624 3.49826 3.68553 3.86873 3.96573 4.09749 4.27974 4.30732 4.34681 4.43931 4.51599 4.54935 4.61854 4.71165 4.74728 4.91424 4.99010 5.01843 5.07991 5.09294 5.21615 5.26341 5.38463 5.40961 5.57533 5.62600 5.76886 5.96686 6.33644 6.58990 6.71025 7.25421 7.40741 8.16346 8.40799 9.34531 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033487 B = 0.003509 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.933045 B = 7978.369430 C = 8583.789428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.730 5.730 5 C -0.231 4.231 6 H 0.073 0.927 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.287 1.287 11 H -0.299 1.299 12 H -0.274 1.274 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.113 4.113 16 C 0.097 3.903 17 N -0.615 5.615 18 C 0.593 3.407 19 O -0.603 6.603 20 C -0.268 4.268 21 C -0.185 4.185 22 C 0.001 3.999 23 N -0.535 5.535 24 H 0.438 0.562 25 C 0.055 3.945 26 C 0.121 3.879 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.374 0.626 31 H 0.249 0.751 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.207 0.793 38 H 0.206 0.794 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 0.318 20.678 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.370 5.370 5 C -0.363 4.363 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.214 1.214 11 H -0.226 1.226 12 H -0.199 1.199 13 C -0.113 4.113 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.024 4.024 17 N -0.348 5.348 18 C 0.386 3.614 19 O -0.486 6.486 20 C -0.278 4.278 21 C -0.209 4.209 22 C -0.127 4.127 23 N -0.131 5.131 24 H 0.279 0.721 25 C -0.083 4.083 26 C -0.002 4.002 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.206 0.794 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.151 0.849 37 H 0.224 0.776 38 H 0.222 0.778 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.444 0.611 20.916 22.564 hybrid contribution -0.007 -0.087 -1.264 1.267 sum 8.437 0.524 19.652 21.393 Atomic orbital electron populations 1.22374 0.98380 1.00803 1.00511 1.20284 0.92247 0.94945 0.85096 0.93435 1.42503 1.78305 1.10283 1.05875 1.19554 1.34375 0.94039 0.88326 0.90954 1.25415 1.03331 0.96792 1.00988 1.69801 1.52836 1.10008 1.29224 0.85259 0.77812 0.77424 0.79999 1.21411 1.22633 1.19915 1.22446 0.96485 0.99513 0.92843 0.90646 1.22535 0.94959 1.03502 0.94089 1.22542 0.86707 1.01346 0.91829 1.48393 1.15875 1.65963 1.04520 1.17614 0.86907 0.76473 0.80389 1.90706 1.29276 1.52180 1.76419 1.20404 0.95339 1.17548 0.94504 1.22081 0.98995 1.07529 0.92304 1.22265 0.90939 1.06039 0.93479 1.41728 1.15240 1.51179 1.04977 0.72101 1.22961 0.91451 1.00371 0.93541 1.22122 0.92400 0.99188 0.86530 0.91775 0.93875 0.94449 0.79415 0.94218 0.89996 0.90843 0.88743 0.89134 0.84855 0.77595 0.77777 0.91236 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.74 9.22 71.98 0.66 -5.08 16 2 C 0.18 6.85 2.40 44.99 0.11 6.96 16 3 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 4 N -0.73 -34.70 4.90 -322.94 -1.58 -36.28 16 5 C -0.23 -12.33 9.93 84.03 0.83 -11.49 16 6 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 7 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 8 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 9 Si 0.96 45.27 29.55 68.60 2.03 47.30 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 13 C -0.09 -2.87 2.64 -9.40 -0.02 -2.90 16 14 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.11 -3.03 6.21 31.78 0.20 -2.83 16 16 C 0.10 2.03 5.00 86.73 0.43 2.46 16 17 N -0.62 -17.27 3.33 -815.83 -2.71 -19.98 16 18 C 0.59 19.12 7.84 86.62 0.68 19.80 16 19 O -0.60 -24.57 17.23 -4.12 -0.07 -24.64 16 20 C -0.27 -6.69 6.26 -19.04 -0.12 -6.81 16 21 C -0.19 -4.11 10.97 23.62 0.26 -3.85 16 22 C 0.00 0.01 11.89 83.12 0.99 1.00 16 23 N -0.54 -5.29 5.90 -194.55 -1.15 -6.43 16 24 H 0.44 0.76 8.96 -92.71 -0.83 -0.07 16 25 C 0.05 0.85 10.42 83.91 0.87 1.73 16 26 C 0.12 3.61 5.48 86.86 0.48 4.09 16 27 H 0.06 1.95 7.58 -2.38 -0.02 1.93 16 28 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.37 19.08 7.80 -92.71 -0.72 18.36 16 31 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.07 8.03 -2.39 -0.02 2.06 16 34 H 0.09 1.51 7.05 -2.39 -0.02 1.49 16 35 H 0.09 1.52 6.85 -2.39 -0.02 1.50 16 36 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.21 2.15 4.42 -2.91 -0.01 2.14 16 39 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.07 2.12 8.04 -2.38 -0.02 2.10 16 Total: -1.00 -75.02 328.70 2.14 -72.88 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.49 Total: 24.77 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.84 Total: -0.51 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -5.16 Total: -119.79 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.64 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -75.02 2.14 -72.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672202831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.431 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds