Wall clock time and date at job start Mon Mar 30 2020 02:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47115 * 2 1 4 4 N 1.46497 * 109.47226 * 120.00040 * 2 1 3 5 5 C 1.36939 * 119.99907 * 275.28055 * 4 2 1 6 6 H 1.08003 * 120.00330 * 359.71777 * 5 4 2 7 7 C 1.38811 * 119.99920 * 179.72432 * 5 4 2 8 8 N 1.31615 * 120.00221 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46998 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47177 * 119.99920 * 9 7 5 12 12 H 1.48500 * 109.47031 * 239.99889 * 9 7 5 13 13 C 1.52995 * 109.47594 * 240.00247 * 2 1 3 14 14 H 1.09004 * 110.88806 * 304.73493 * 13 2 1 15 15 C 1.55153 * 111.00782 * 180.85543 * 13 2 1 16 16 C 1.54327 * 102.94366 * 206.42303 * 15 13 2 17 17 N 1.47012 * 107.27223 * 22.19074 * 16 15 13 18 18 C 1.34775 * 125.65040 * 181.09785 * 17 16 15 19 19 O 1.21631 * 120.00147 * 179.97438 * 18 17 16 20 20 C 1.47261 * 120.00119 * 359.97438 * 18 17 16 21 21 C 1.46691 * 126.94397 * 180.02562 * 20 18 17 22 22 C 1.34486 * 106.33133 * 179.97438 * 21 20 18 23 23 N 1.36446 * 108.85851 * 359.97438 * 22 21 20 24 24 H 0.97003 * 124.85610 * 180.02562 * 23 22 21 25 25 C 1.34672 * 110.29815 * 359.72527 * 23 22 21 26 26 C 1.47478 * 108.72540 * 1.02825 * 17 16 15 27 27 H 1.08992 * 109.47170 * 294.75036 * 1 2 3 28 28 H 1.09005 * 109.47070 * 54.75081 * 1 2 3 29 29 H 1.09003 * 109.46978 * 174.74805 * 1 2 3 30 30 H 0.96999 * 120.00139 * 95.00344 * 4 2 1 31 31 H 0.97002 * 120.00118 * 180.02562 * 8 7 5 32 32 H 1.09001 * 110.71951 * 324.78385 * 15 13 2 33 33 H 1.08998 * 110.72173 * 87.88040 * 15 13 2 34 34 H 1.08997 * 109.88434 * 141.61121 * 16 15 13 35 35 H 1.08999 * 109.87974 * 262.77326 * 16 15 13 36 36 H 1.07997 * 126.82997 * 0.02577 * 21 20 18 37 37 H 1.08001 * 125.57029 * 180.02562 * 22 21 20 38 38 H 1.07994 * 125.80295 * 180.29977 * 25 23 22 39 39 H 1.08995 * 110.40757 * 217.08532 * 26 17 16 40 40 H 1.09000 * 110.34820 * 94.73898 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1437 -0.0089 2.3771 6 1 1.8868 1.0391 2.4257 7 6 2.6010 -0.6646 3.5119 8 7 2.9136 -1.9418 3.4529 9 14 2.7726 0.2655 5.1228 10 1 2.3604 1.6783 4.9249 11 1 1.9070 -0.3636 6.1523 12 1 4.1875 0.2214 5.5715 13 6 2.0401 -0.7212 -1.2492 14 1 1.6226 -1.7259 -1.3156 15 6 3.5909 -0.7606 -1.2744 16 6 3.9099 -0.8551 -2.7813 17 7 2.7417 -0.3370 -3.5081 18 6 2.6169 -0.2696 -4.8484 19 8 1.6003 0.1794 -5.3427 20 6 3.7112 -0.7397 -5.7144 21 6 3.7382 -0.7369 -7.1810 22 6 4.9275 -1.2530 -7.5384 23 7 5.6277 -1.5694 -6.4108 24 1 6.5167 -1.9574 -6.4009 25 6 4.9108 -1.2601 -5.3135 26 6 1.7280 0.0955 -2.5281 27 1 -0.3633 0.4302 0.9332 28 1 -0.3633 0.5931 -0.8393 29 1 -0.3633 -1.0234 -0.0941 30 1 2.2491 -1.6317 1.1526 31 1 3.2328 -2.4001 4.2460 32 1 4.0069 0.1525 -0.8487 33 1 3.9631 -1.6365 -0.7430 34 1 4.7879 -0.2522 -3.0129 35 1 4.0877 -1.8943 -3.0581 36 1 2.9584 -0.3889 -7.8422 37 1 5.2725 -1.3932 -8.5522 38 1 5.2280 -1.4018 -4.2910 39 1 0.7263 -0.1353 -2.8905 40 1 1.8241 1.1629 -2.3294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672202833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:53 Heat of formation + Delta-G solvation = 5.574802 kcal Electronic energy + Delta-G solvation = -21316.638261 eV Core-core repulsion = 18131.554412 eV Total energy + Delta-G solvation = -3185.083849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09867 -40.66128 -38.81350 -36.75962 -34.26520 -32.35860 -31.49722 -30.93521 -30.17796 -28.51001 -26.31504 -25.11849 -22.94755 -22.45807 -21.50869 -21.05738 -20.48019 -19.11374 -18.65957 -17.48219 -17.36469 -16.49412 -16.14030 -15.54891 -15.42561 -15.01648 -14.79890 -14.67159 -14.60716 -14.03538 -13.84968 -13.80591 -13.65119 -13.38361 -13.18330 -13.05448 -12.80843 -12.62771 -12.25576 -12.10031 -11.96959 -11.61419 -11.51668 -11.34553 -11.03694 -10.89524 -9.88521 -9.54493 -9.29535 -8.94950 -7.88878 -5.15437 0.77775 1.49870 1.51322 1.55816 1.60070 1.99512 2.50329 2.55594 2.60217 3.44202 3.49124 3.68649 3.87592 3.96253 4.10071 4.28450 4.30988 4.34707 4.43994 4.51411 4.54640 4.61836 4.71097 4.74940 4.91214 4.99778 5.02497 5.08007 5.09280 5.21955 5.27023 5.38996 5.40601 5.58029 5.62862 5.76920 5.96709 6.33718 6.58956 6.70987 7.25375 7.40941 8.16427 8.41080 9.34563 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032701 B = 0.003538 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.038645 B = 7911.310854 C = 8529.984799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.047 0.953 4 N -0.729 5.729 5 C -0.229 4.229 6 H 0.072 0.928 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.269 1.269 11 H -0.298 1.298 12 H -0.294 1.294 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.112 4.112 16 C 0.098 3.902 17 N -0.615 5.615 18 C 0.593 3.407 19 O -0.603 6.603 20 C -0.268 4.268 21 C -0.185 4.185 22 C 0.001 3.999 23 N -0.535 5.535 24 H 0.438 0.562 25 C 0.054 3.946 26 C 0.121 3.879 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.374 0.626 31 H 0.249 0.751 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.207 0.793 38 H 0.206 0.794 39 H 0.067 0.933 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -0.382 -20.311 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.074 3.926 3 H 0.065 0.935 4 N -0.369 5.369 5 C -0.362 4.362 6 H 0.090 0.910 7 C -0.265 4.265 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.226 1.226 12 H -0.221 1.221 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.150 4.150 16 C -0.024 4.024 17 N -0.347 5.347 18 C 0.386 3.614 19 O -0.486 6.486 20 C -0.278 4.278 21 C -0.209 4.209 22 C -0.127 4.127 23 N -0.131 5.131 24 H 0.279 0.721 25 C -0.083 4.083 26 C -0.002 4.002 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.206 0.794 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.224 0.776 38 H 0.222 0.778 39 H 0.085 0.915 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.547 -0.040 -20.568 22.273 hybrid contribution -0.015 -0.074 1.280 1.282 sum 8.532 -0.114 -19.288 21.091 Atomic orbital electron populations 1.22368 0.98318 1.00837 1.00516 1.20284 0.92275 0.94926 0.85139 0.93546 1.42502 1.78290 1.10387 1.05754 1.19584 1.34369 0.94019 0.88184 0.90991 1.25402 1.03386 0.96788 1.00922 1.69798 1.53055 1.09932 1.29033 0.85204 0.76692 0.78194 0.80485 1.19377 1.22601 1.22125 1.22458 0.96712 0.99216 0.92903 0.90474 1.22505 0.94769 1.03536 0.94170 1.22533 0.88433 1.00183 0.91247 1.48407 1.19292 1.62614 1.04432 1.17612 0.86343 0.77145 0.80277 1.90706 1.32959 1.50131 1.74772 1.20405 0.96533 1.16232 0.94617 1.22081 0.99293 1.07033 0.92492 1.22265 0.92721 1.04819 0.92910 1.41730 1.17808 1.48637 1.04957 0.72108 1.22960 0.91450 0.99913 0.94017 1.22139 0.92265 0.98567 0.87277 0.94441 0.91800 0.93803 0.79355 0.94219 0.91066 0.90004 0.88836 0.89096 0.84836 0.77588 0.77810 0.91472 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.29 71.98 0.67 -5.04 16 2 C 0.18 6.83 2.42 44.99 0.11 6.94 16 3 H 0.05 1.78 8.00 -2.38 -0.02 1.76 16 4 N -0.73 -34.53 4.76 -322.95 -1.54 -36.07 16 5 C -0.23 -12.23 9.93 84.03 0.83 -11.39 16 6 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 7 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 8 N -0.97 -57.15 13.06 21.65 0.28 -56.87 16 9 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 12 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 13 C -0.09 -2.87 2.61 -9.40 -0.02 -2.89 16 14 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 15 C -0.11 -3.05 6.07 31.78 0.19 -2.85 16 16 C 0.10 2.06 5.00 86.73 0.43 2.50 16 17 N -0.62 -17.33 3.33 -815.72 -2.71 -20.04 16 18 C 0.59 19.15 7.84 86.62 0.68 19.83 16 19 O -0.60 -24.55 17.23 -4.13 -0.07 -24.62 16 20 C -0.27 -6.71 6.26 -19.04 -0.12 -6.83 16 21 C -0.18 -4.11 10.97 23.62 0.26 -3.85 16 22 C 0.00 0.02 11.89 83.12 0.99 1.00 16 23 N -0.54 -5.35 5.90 -194.55 -1.15 -6.50 16 24 H 0.44 0.82 8.96 -92.71 -0.83 -0.01 16 25 C 0.05 0.86 10.42 83.91 0.87 1.73 16 26 C 0.12 3.61 5.75 86.85 0.50 4.11 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.93 7.75 -2.38 -0.02 1.91 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.37 18.97 7.80 -92.71 -0.72 18.25 16 31 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 32 H 0.07 2.09 8.04 -2.39 -0.02 2.07 16 33 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.09 1.53 7.01 -2.39 -0.02 1.52 16 35 H 0.09 1.54 6.89 -2.39 -0.02 1.53 16 36 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.21 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.21 2.20 4.42 -2.91 -0.01 2.18 16 39 H 0.07 2.14 8.04 -2.39 -0.02 2.12 16 40 H 0.07 2.04 7.97 -2.39 -0.02 2.02 16 Total: -1.00 -74.73 328.79 2.21 -72.52 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.49 Total: 24.63 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.86 Total: -0.32 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -5.12 Total: -119.48 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.07 Total: -24.62 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.73 2.21 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672202833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.097 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds