Wall clock time and date at job start Mon Mar 30 2020 02:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47409 * 239.99133 * 2 1 3 5 5 C 1.53000 * 109.46971 * 175.00319 * 4 2 1 6 6 N 1.46500 * 109.46853 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99968 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.38678 * 120.41675 * 270.25421 * 10 9 7 12 12 C 1.38627 * 118.41930 * 180.24221 * 11 10 9 13 13 C 1.38232 * 119.16085 * 359.75178 * 12 11 10 14 14 N 1.31857 * 120.76541 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72235 * 0.02562 * 14 13 12 16 16 N 1.46500 * 109.46659 * 119.99276 * 2 1 3 17 17 C 1.36942 * 120.00112 * 275.00238 * 16 2 1 18 18 H 1.07993 * 119.99782 * 359.97438 * 17 16 2 19 19 C 1.38816 * 119.99967 * 179.97438 * 17 16 2 20 20 N 1.31619 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47056 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47001 * 120.00115 * 21 19 17 24 24 H 1.48505 * 109.47188 * 240.00083 * 21 19 17 25 25 H 1.08996 * 109.47431 * 300.01014 * 1 2 3 26 26 H 1.09000 * 109.46467 * 60.00567 * 1 2 3 27 27 H 1.08997 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46515 * 55.00405 * 4 2 1 29 29 H 1.08996 * 109.47043 * 295.00277 * 4 2 1 30 30 H 1.08999 * 109.46996 * 60.00022 * 5 4 2 31 31 H 1.09000 * 109.47113 * 300.00341 * 5 4 2 32 32 H 0.97000 * 120.00028 * 359.97438 * 6 5 4 33 33 H 1.09001 * 109.46626 * 59.99898 * 9 7 6 34 34 H 1.08996 * 109.46931 * 299.99770 * 9 7 6 35 35 H 1.07994 * 120.78944 * 359.96926 * 11 10 9 36 36 H 1.07997 * 120.42083 * 179.72800 * 12 11 10 37 37 H 1.07999 * 119.61954 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.61237 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00317 * 95.00263 * 16 2 1 40 40 H 0.97002 * 120.00009 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3134 6 7 4.0533 -1.3037 -2.5098 7 6 5.3743 -1.3399 -2.7749 8 8 6.1585 -0.8006 -2.0232 9 6 5.8766 -2.0505 -4.0053 10 6 7.3785 -1.9441 -4.0687 11 6 7.9799 -0.8774 -4.7197 12 6 9.3646 -0.8234 -4.7573 13 6 10.0947 -1.8246 -4.1446 14 7 9.4888 -2.8214 -3.5298 15 6 8.1737 -2.9050 -3.4741 16 7 2.0183 -0.6905 1.1963 17 6 2.1490 -0.0072 2.3759 18 1 1.8925 1.0407 2.4241 19 6 2.6111 -0.6616 3.5095 20 7 2.9241 -1.9387 3.4505 21 14 2.7900 0.2706 5.1183 22 1 2.3773 1.6832 4.9204 23 1 1.9288 -0.3571 6.1525 24 1 4.2069 0.2268 5.5609 25 1 -0.3634 0.5140 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6055 -0.2619 -2.1369 29 1 1.7517 -1.7716 -1.2053 30 1 3.9995 -1.0729 -0.4256 31 1 3.8533 0.4368 -1.3571 32 1 3.4260 -1.7353 -3.1107 33 1 5.4423 -1.5907 -4.8931 34 1 5.5880 -3.1006 -3.9617 35 1 7.3837 -0.1095 -5.1899 36 1 9.8667 -0.0096 -5.2593 37 1 11.1738 -1.7896 -4.1690 38 1 7.7131 -3.7367 -2.9618 39 1 2.2490 -1.6316 1.1529 40 1 3.2473 -2.3959 4.2426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690839129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:18 Heat of formation + Delta-G solvation = -3.187196 kcal Electronic energy + Delta-G solvation = -20531.565971 eV Core-core repulsion = 17346.102173 eV Total energy + Delta-G solvation = -3185.463798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49436 -39.23605 -36.60841 -34.37496 -33.68613 -32.27085 -32.02269 -29.61404 -28.47582 -27.42241 -23.93837 -23.70652 -23.08358 -22.02450 -20.55029 -19.63245 -17.37057 -17.22351 -16.86117 -16.61475 -16.00184 -15.39139 -14.93324 -14.76872 -14.09517 -13.99986 -13.60497 -13.43508 -13.30898 -13.19497 -13.16615 -12.49234 -12.27518 -12.04477 -11.72480 -11.54855 -11.07318 -10.92148 -10.74640 -10.62996 -10.28600 -10.04567 -9.94548 -9.71895 -9.63140 -9.56733 -9.07534 -8.92095 -8.81553 -6.94130 -5.74032 -3.02745 0.95907 1.16537 2.73770 3.27452 3.46102 3.51698 3.53931 3.77001 4.26185 4.51716 4.61106 4.62106 4.80602 4.85245 4.92009 5.15228 5.20015 5.29991 5.38871 5.49760 5.57029 5.62199 5.68688 5.87445 5.94222 6.06006 6.07739 6.17028 6.33836 6.39097 6.47276 6.55894 6.66839 6.70562 6.86111 7.05784 7.62045 7.73614 7.85783 8.35339 8.44332 9.55831 10.12263 10.46701 11.48687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.003412 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.590285 B = 8204.058667 C = 9188.836277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.729 5.729 7 C 0.507 3.493 8 O -0.529 6.529 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.062 4.062 12 C -0.173 4.173 13 C 0.094 3.906 14 N -0.484 5.484 15 C 0.115 3.885 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.396 0.604 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.383 0.617 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -0.173 -21.594 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.381 5.381 7 C 0.292 3.708 8 O -0.405 6.405 9 C -0.140 4.140 10 C -0.118 4.118 11 C -0.088 4.088 12 C -0.193 4.193 13 C -0.063 4.063 14 N -0.192 5.192 15 C -0.042 4.042 16 N -0.366 5.366 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.217 0.783 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.365 -0.287 -20.483 21.451 hybrid contribution -0.760 0.655 0.318 1.052 sum 5.605 0.368 -20.166 20.934 Atomic orbital electron populations 1.22427 0.99150 1.00828 0.99957 1.20153 0.91870 0.95566 0.86053 0.93346 1.22055 0.93896 1.01789 0.99309 1.21457 0.94392 0.97119 0.87137 1.46120 1.07073 1.57220 1.27642 1.20417 0.82544 0.80877 0.86944 1.90776 1.55210 1.45208 1.49322 1.20614 0.92319 1.03099 0.97924 1.20310 0.95363 0.96573 0.99506 1.21424 0.94934 0.96232 0.96247 1.22095 0.94663 1.00609 1.01944 1.22759 1.00482 0.89877 0.93162 1.67694 1.11329 1.24291 1.15933 1.22636 0.89096 0.97738 0.94776 1.42460 1.78097 1.10654 1.05369 1.19262 1.36486 0.93843 0.87310 0.91178 1.24726 1.02137 0.95959 0.98061 1.69662 1.50947 1.08677 1.28762 0.86150 0.77336 0.78802 0.84113 1.20581 1.21946 1.21876 0.92723 0.94590 0.93518 0.91965 0.91592 0.89733 0.91933 0.77041 0.87874 0.87561 0.85057 0.84840 0.82890 0.82904 0.78299 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 6 N -0.73 -9.06 5.56 -60.29 -0.33 -9.40 16 7 C 0.51 6.96 7.82 -10.98 -0.09 6.87 16 8 O -0.53 -10.16 16.03 5.55 0.09 -10.07 16 9 C -0.10 -0.88 5.85 -29.04 -0.17 -1.05 16 10 C -0.12 -1.28 4.39 -104.48 -0.46 -1.74 16 11 C -0.06 -0.64 9.86 -39.28 -0.39 -1.02 16 12 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 13 C 0.09 1.01 11.18 -17.54 -0.20 0.82 16 14 N -0.48 -6.41 10.36 -13.25 -0.14 -6.55 16 15 C 0.11 1.42 10.86 -17.55 -0.19 1.23 16 16 N -0.72 -17.70 4.57 -53.42 -0.24 -17.94 16 17 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 21 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 1.75 7.75 -51.93 -0.40 1.35 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.40 3.42 8.47 -40.82 -0.35 3.08 16 33 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.11 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 40 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -35.31 344.30 -7.97 -43.28 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.10 Total: 9.05 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.13 Total: -3.64 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.01 Total: -61.55 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.31 -7.97 -43.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.095 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds