Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.52999 * 109.47409 * 239.99133 * 2 1 3 5 5 C 1.53000 * 109.46971 * 175.00319 * 4 2 1 6 6 N 1.46500 * 109.46853 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99968 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.38678 * 120.41675 * 270.25421 * 10 9 7 12 12 C 1.38627 * 118.41930 * 180.24221 * 11 10 9 13 13 C 1.38232 * 119.16085 * 359.75178 * 12 11 10 14 14 N 1.31857 * 120.76541 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72235 * 0.02562 * 14 13 12 16 16 N 1.46500 * 109.46659 * 119.99276 * 2 1 3 17 17 C 1.36942 * 120.00112 * 275.00238 * 16 2 1 18 18 H 1.07993 * 119.99782 * 359.97438 * 17 16 2 19 19 C 1.38816 * 119.99967 * 179.97438 * 17 16 2 20 20 N 1.31619 * 119.99917 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99875 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47056 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47001 * 120.00115 * 21 19 17 24 24 H 1.48505 * 109.47188 * 240.00083 * 21 19 17 25 25 H 1.08996 * 109.47431 * 300.01014 * 1 2 3 26 26 H 1.09000 * 109.46467 * 60.00567 * 1 2 3 27 27 H 1.08997 * 109.47119 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46515 * 55.00405 * 4 2 1 29 29 H 1.08996 * 109.47043 * 295.00277 * 4 2 1 30 30 H 1.08999 * 109.46996 * 60.00022 * 5 4 2 31 31 H 1.09000 * 109.47113 * 300.00341 * 5 4 2 32 32 H 0.97000 * 120.00028 * 359.97438 * 6 5 4 33 33 H 1.09001 * 109.46626 * 59.99898 * 9 7 6 34 34 H 1.08996 * 109.46931 * 299.99770 * 9 7 6 35 35 H 1.07994 * 120.78944 * 359.96926 * 11 10 9 36 36 H 1.07997 * 120.42083 * 179.72800 * 12 11 10 37 37 H 1.07999 * 119.61954 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.61237 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00317 * 95.00263 * 16 2 1 40 40 H 0.97002 * 120.00009 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3134 6 7 4.0533 -1.3037 -2.5098 7 6 5.3743 -1.3399 -2.7749 8 8 6.1585 -0.8006 -2.0232 9 6 5.8766 -2.0505 -4.0053 10 6 7.3785 -1.9441 -4.0687 11 6 7.9799 -0.8774 -4.7197 12 6 9.3646 -0.8234 -4.7573 13 6 10.0947 -1.8246 -4.1446 14 7 9.4888 -2.8214 -3.5298 15 6 8.1737 -2.9050 -3.4741 16 7 2.0183 -0.6905 1.1963 17 6 2.1490 -0.0072 2.3759 18 1 1.8925 1.0407 2.4241 19 6 2.6111 -0.6616 3.5095 20 7 2.9241 -1.9387 3.4505 21 14 2.7900 0.2706 5.1183 22 1 2.3773 1.6832 4.9204 23 1 1.9288 -0.3571 6.1525 24 1 4.2069 0.2268 5.5609 25 1 -0.3634 0.5140 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.6055 -0.2619 -2.1369 29 1 1.7517 -1.7716 -1.2053 30 1 3.9995 -1.0729 -0.4256 31 1 3.8533 0.4368 -1.3571 32 1 3.4260 -1.7353 -3.1107 33 1 5.4423 -1.5907 -4.8931 34 1 5.5880 -3.1006 -3.9617 35 1 7.3837 -0.1095 -5.1899 36 1 9.8667 -0.0096 -5.2593 37 1 11.1738 -1.7896 -4.1690 38 1 7.7131 -3.7367 -2.9618 39 1 2.2490 -1.6316 1.1529 40 1 3.2473 -2.3959 4.2426 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690839129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = -28.999654 kcal Electronic energy + Delta-G solvation = -20532.685283 eV Core-core repulsion = 17346.102173 eV Total energy + Delta-G solvation = -3186.583110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37120 -40.30006 -38.13366 -35.81250 -34.55806 -34.10400 -32.82811 -31.17041 -29.94885 -28.42941 -25.85939 -24.51128 -24.33329 -23.07009 -21.78598 -21.00346 -19.28568 -18.13971 -17.89915 -17.45479 -17.08563 -16.87225 -16.31767 -15.80259 -15.64367 -15.33538 -15.06182 -14.59527 -14.45325 -14.22176 -14.09174 -13.93426 -13.55870 -13.26156 -13.07948 -12.86381 -12.62616 -12.47226 -12.24607 -12.19404 -12.09377 -11.63594 -11.59707 -11.05962 -10.95051 -10.66623 -10.40428 -10.05630 -9.89945 -8.97950 -7.93681 -5.20103 0.15701 0.37512 1.44595 1.46246 1.55150 1.68130 2.26080 2.56252 2.92692 3.40960 3.50865 3.73236 3.92678 3.94124 3.99994 4.04934 4.10584 4.13285 4.26201 4.39659 4.50773 4.58589 4.67760 4.78194 4.79897 4.87201 4.92008 5.04368 5.12314 5.18875 5.25257 5.30980 5.41202 5.50296 5.54123 5.62831 5.80345 6.29841 6.63844 7.03895 7.34890 7.35796 8.14357 8.34945 9.30097 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019126 B = 0.003412 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.590285 B = 8204.058667 C = 9188.836277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.712 5.712 7 C 0.503 3.497 8 O -0.592 6.592 9 C -0.085 4.085 10 C -0.127 4.127 11 C -0.072 4.072 12 C -0.172 4.172 13 C 0.077 3.923 14 N -0.519 5.519 15 C 0.087 3.913 16 N -0.736 5.736 17 C -0.232 4.232 18 H 0.074 0.926 19 C -0.079 4.079 20 N -0.970 5.970 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.293 1.293 24 H -0.299 1.299 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.420 0.580 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.372 0.628 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 0.867 -24.299 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.291 3.709 8 O -0.472 6.472 9 C -0.125 4.125 10 C -0.129 4.129 11 C -0.098 4.098 12 C -0.191 4.191 13 C -0.079 4.079 14 N -0.228 5.228 15 C -0.069 4.069 16 N -0.377 5.377 17 C -0.364 4.364 18 H 0.091 0.909 19 C -0.271 4.271 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.220 1.220 24 H -0.227 1.227 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.257 0.743 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.193 0.807 38 H 0.172 0.828 39 H 0.203 0.797 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.119 0.768 -23.261 23.830 hybrid contribution -0.378 0.398 1.057 1.191 sum 4.740 1.165 -22.205 22.735 Atomic orbital electron populations 1.22263 0.97103 1.01071 1.00867 1.20480 0.93177 0.95152 0.85785 0.94145 1.21905 0.92460 1.02094 0.98824 1.21052 0.95327 0.95999 0.86784 1.45889 1.07469 1.56548 1.26592 1.21307 0.82126 0.79868 0.87593 1.90756 1.56737 1.48003 1.51743 1.20661 0.90921 1.04357 0.96585 1.20557 0.96492 0.96513 0.99326 1.21855 0.95628 0.96360 0.95973 1.22475 0.94749 1.00790 1.01101 1.23247 1.01818 0.89811 0.93043 1.67650 1.12032 1.25851 1.17249 1.22850 0.89392 0.98839 0.95822 1.42671 1.78381 1.10255 1.06350 1.19633 1.34231 0.94044 0.88463 0.90851 1.25481 1.03374 0.96871 1.01329 1.69811 1.53018 1.10173 1.29121 0.85181 0.76543 0.78377 0.80389 1.18979 1.21975 1.22721 0.95001 0.90474 0.93584 0.87435 0.90897 0.95085 0.93413 0.74279 0.83800 0.84851 0.82637 0.81780 0.80739 0.82774 0.79652 0.94313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.95 2.89 44.99 0.13 6.08 16 3 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 4 C -0.11 -3.11 4.87 30.59 0.15 -2.96 16 5 C 0.13 4.26 5.56 86.38 0.48 4.74 16 6 N -0.71 -16.33 5.56 -463.05 -2.57 -18.91 16 7 C 0.50 13.22 7.82 87.66 0.69 13.91 16 8 O -0.59 -23.19 16.03 -3.04 -0.05 -23.23 16 9 C -0.09 -1.29 5.85 29.10 0.17 -1.12 16 10 C -0.13 -2.66 4.39 -19.77 -0.09 -2.74 16 11 C -0.07 -1.33 9.86 22.47 0.22 -1.11 16 12 C -0.17 -2.99 10.11 22.36 0.23 -2.76 16 13 C 0.08 1.62 11.18 84.69 0.95 2.57 16 14 N -0.52 -13.98 10.36 -195.83 -2.03 -16.01 16 15 C 0.09 2.19 10.86 84.67 0.92 3.11 16 16 N -0.74 -36.43 4.57 -322.93 -1.48 -37.90 16 17 C -0.23 -12.97 9.93 84.03 0.83 -12.14 16 18 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 19 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 20 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 21 Si 0.97 47.68 29.55 68.60 2.03 49.70 16 22 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 24 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.33 7.75 -2.39 -0.02 1.32 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.42 5.69 8.47 -92.71 -0.79 4.90 16 33 H 0.14 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.13 1.33 8.09 -2.39 -0.02 1.31 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 38 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.37 19.90 7.80 -92.71 -0.72 19.18 16 40 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -81.51 344.30 1.54 -79.97 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.47 Total: 27.76 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.83 Total: -0.81 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -5.80 Total: -133.40 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.70 kcal Total: -81.51 1.54 -79.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.971 kcal (2) G-P(sol) polarization free energy of solvation -81.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds