Wall clock time and date at job start Mon Mar 30 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46792 * 2 1 4 4 C 1.52999 * 109.47129 * 119.99771 * 2 1 3 5 5 C 1.53000 * 109.46971 * 185.00219 * 4 2 1 6 6 N 1.46500 * 109.46853 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99968 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.38678 * 120.41675 * 270.25421 * 10 9 7 12 12 C 1.38627 * 118.41930 * 180.24221 * 11 10 9 13 13 C 1.38232 * 119.16085 * 359.75178 * 12 11 10 14 14 N 1.31857 * 120.76541 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72235 * 0.02562 * 14 13 12 16 16 N 1.46496 * 109.47256 * 240.00293 * 2 1 3 17 17 C 1.36935 * 120.00532 * 84.99431 * 16 2 1 18 18 H 1.08008 * 119.99733 * 0.02562 * 17 16 2 19 19 C 1.38807 * 120.00521 * 180.02562 * 17 16 2 20 20 N 1.31622 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47497 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47435 * 120.00066 * 21 19 17 24 24 H 1.48499 * 109.46979 * 239.99650 * 21 19 17 25 25 H 1.09005 * 109.46952 * 60.00365 * 1 2 3 26 26 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46964 * 300.00369 * 1 2 3 28 28 H 1.09001 * 109.46515 * 65.00305 * 4 2 1 29 29 H 1.08996 * 109.47043 * 305.00177 * 4 2 1 30 30 H 1.08999 * 109.46996 * 60.00022 * 5 4 2 31 31 H 1.09000 * 109.47113 * 300.00341 * 5 4 2 32 32 H 0.97000 * 120.00028 * 359.97438 * 6 5 4 33 33 H 1.09001 * 109.46626 * 59.99898 * 9 7 6 34 34 H 1.08996 * 109.46931 * 299.99770 * 9 7 6 35 35 H 1.07994 * 120.78944 * 359.96926 * 11 10 9 36 36 H 1.07997 * 120.42083 * 179.72800 * 12 11 10 37 37 H 1.07999 * 119.61954 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.61237 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99645 * 265.00323 * 16 2 1 40 40 H 0.97000 * 119.99793 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3042 2.5096 7 6 5.3741 -1.3396 2.7753 8 8 6.1584 -0.7997 2.0240 9 6 5.8765 -2.0500 4.0057 10 6 7.3783 -1.9438 4.0691 11 6 8.1763 -2.9058 3.4684 12 6 9.5531 -2.7700 3.5566 13 6 10.0810 -1.6850 4.2311 14 7 9.2915 -0.7863 4.7857 15 6 7.9778 -0.8834 4.7217 16 7 2.0184 -0.6905 -1.1962 17 6 2.1491 -0.0075 -2.3758 18 1 1.8926 1.0406 -2.4242 19 6 2.6114 -0.6619 -3.5093 20 7 2.9245 -1.9389 -3.4502 21 14 2.7903 0.2701 -5.1182 22 1 2.3763 1.6826 -4.9208 23 1 4.2072 0.2264 -5.5607 24 1 1.9293 -0.3577 -6.1523 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1369 30 1 3.8532 0.4371 1.3573 31 1 3.9995 -1.0726 0.4259 32 1 3.4259 -1.7357 3.1106 33 1 5.5884 -3.1004 3.9618 34 1 5.4416 -1.5908 4.8934 35 1 7.7356 -3.7433 2.9482 36 1 10.2049 -3.5027 3.1044 37 1 11.1526 -1.5716 4.3039 38 1 7.3634 -0.1278 5.1886 39 1 2.2491 -1.6317 -1.1526 40 1 3.2472 -2.3963 -4.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690839130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:21 Heat of formation + Delta-G solvation = -3.452847 kcal Electronic energy + Delta-G solvation = -20531.534732 eV Core-core repulsion = 17346.059415 eV Total energy + Delta-G solvation = -3185.475317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49405 -39.23607 -36.61131 -34.37720 -33.68406 -32.27574 -32.02060 -29.61717 -28.47986 -27.42290 -23.94379 -23.70276 -23.08573 -22.02409 -20.55067 -19.63408 -17.37560 -17.22396 -16.86367 -16.61230 -15.99897 -15.37703 -14.98382 -14.72653 -14.10376 -14.00237 -13.60837 -13.43651 -13.32990 -13.17562 -13.16015 -12.49633 -12.26192 -12.05620 -11.72531 -11.55137 -11.07321 -10.92656 -10.75190 -10.63326 -10.28906 -10.04345 -9.94189 -9.71839 -9.63865 -9.58026 -9.07854 -8.92626 -8.81745 -6.94899 -5.75016 -3.03590 0.95710 1.17274 2.73829 3.27384 3.45352 3.51162 3.53165 3.76778 4.25811 4.49992 4.61378 4.62819 4.83308 4.85127 4.92137 5.15111 5.22217 5.29876 5.38794 5.49042 5.56397 5.61576 5.68410 5.87241 5.96551 6.06127 6.09175 6.17016 6.33731 6.38837 6.47135 6.55679 6.66764 6.70271 6.85953 7.05584 7.62051 7.72895 7.84046 8.35366 8.43454 9.54970 10.11423 10.45912 11.47754 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.003406 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.852535 B = 8218.199109 C = 9197.894316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.729 5.729 7 C 0.507 3.493 8 O -0.529 6.529 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.061 4.061 12 C -0.171 4.171 13 C 0.094 3.906 14 N -0.486 5.486 15 C 0.112 3.888 16 N -0.724 5.724 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.396 0.604 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.383 0.617 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -3.195 19.732 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.381 5.381 7 C 0.292 3.708 8 O -0.405 6.405 9 C -0.140 4.140 10 C -0.117 4.117 11 C -0.087 4.087 12 C -0.191 4.191 13 C -0.063 4.063 14 N -0.194 5.194 15 C -0.045 4.045 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.220 1.220 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.217 0.783 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.528 -1.942 19.464 20.621 hybrid contribution -0.617 -0.860 -1.252 1.640 sum 5.911 -2.802 18.212 19.351 Atomic orbital electron populations 1.22428 0.99138 1.00820 0.99976 1.20156 0.91874 0.95588 0.86040 0.93315 1.22055 0.93903 1.01762 0.99328 1.21457 0.94385 0.97155 0.87111 1.46119 1.07077 1.57198 1.27661 1.20417 0.82546 0.80874 0.86942 1.90776 1.55217 1.45168 1.49357 1.20614 0.92348 1.02992 0.98007 1.20308 0.95213 0.96633 0.99575 1.21473 0.93689 0.98221 0.95295 1.22117 0.95787 1.00111 1.01101 1.22746 0.99995 0.90093 0.93488 1.67676 1.05438 1.27621 1.18678 1.22575 0.90918 0.95365 0.95644 1.42458 1.78090 1.10646 1.05381 1.19269 1.36376 0.93858 0.87310 0.91162 1.24722 1.02163 0.95965 0.98066 1.69666 1.51055 1.08681 1.28729 0.86147 0.77321 0.78824 0.84095 1.20562 1.21886 1.21958 0.92722 0.93530 0.94563 0.91624 0.91928 0.91877 0.89785 0.77042 0.87747 0.87694 0.84884 0.84750 0.82881 0.83075 0.78319 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.12 1.97 5.56 -4.04 -0.02 1.95 16 6 N -0.73 -9.06 5.56 -60.29 -0.33 -9.40 16 7 C 0.51 6.96 7.82 -10.98 -0.09 6.88 16 8 O -0.53 -10.16 16.03 5.55 0.09 -10.07 16 9 C -0.10 -0.89 5.85 -29.04 -0.17 -1.06 16 10 C -0.11 -1.28 4.39 -104.48 -0.46 -1.74 16 11 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 12 C -0.17 -1.71 10.11 -39.44 -0.40 -2.11 16 13 C 0.09 1.01 11.18 -17.54 -0.20 0.81 16 14 N -0.49 -6.21 10.36 -13.25 -0.14 -6.35 16 15 C 0.11 1.33 10.86 -17.55 -0.19 1.13 16 16 N -0.72 -17.65 4.57 -53.42 -0.24 -17.90 16 17 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 21 Si 0.90 22.70 29.55 -169.99 -5.02 17.68 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.73 7.75 -51.93 -0.40 1.33 16 32 H 0.40 3.42 8.47 -40.82 -0.35 3.08 16 33 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.38 9.95 7.80 -40.82 -0.32 9.64 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -35.14 344.30 -7.97 -43.11 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.10 Total: 9.09 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.13 Total: -3.79 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.01 Total: -61.20 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.14 -7.97 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.656 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds