Wall clock time and date at job start Mon Mar 30 2020 02:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46792 * 2 1 4 4 C 1.52999 * 109.47129 * 119.99771 * 2 1 3 5 5 C 1.53000 * 109.46971 * 185.00219 * 4 2 1 6 6 N 1.46500 * 109.46853 * 180.02562 * 5 4 2 7 7 C 1.34782 * 119.99968 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99341 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00088 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47115 * 179.97438 * 9 7 6 11 11 C 1.38678 * 120.41675 * 270.25421 * 10 9 7 12 12 C 1.38627 * 118.41930 * 180.24221 * 11 10 9 13 13 C 1.38232 * 119.16085 * 359.75178 * 12 11 10 14 14 N 1.31857 * 120.76541 * 359.97438 * 13 12 11 15 15 C 1.31889 * 121.72235 * 0.02562 * 14 13 12 16 16 N 1.46496 * 109.47256 * 240.00293 * 2 1 3 17 17 C 1.36935 * 120.00532 * 84.99431 * 16 2 1 18 18 H 1.08008 * 119.99733 * 0.02562 * 17 16 2 19 19 C 1.38807 * 120.00521 * 180.02562 * 17 16 2 20 20 N 1.31622 * 119.99800 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00170 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47497 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47435 * 120.00066 * 21 19 17 24 24 H 1.48499 * 109.46979 * 239.99650 * 21 19 17 25 25 H 1.09005 * 109.46952 * 60.00365 * 1 2 3 26 26 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46964 * 300.00369 * 1 2 3 28 28 H 1.09001 * 109.46515 * 65.00305 * 4 2 1 29 29 H 1.08996 * 109.47043 * 305.00177 * 4 2 1 30 30 H 1.08999 * 109.46996 * 60.00022 * 5 4 2 31 31 H 1.09000 * 109.47113 * 300.00341 * 5 4 2 32 32 H 0.97000 * 120.00028 * 359.97438 * 6 5 4 33 33 H 1.09001 * 109.46626 * 59.99898 * 9 7 6 34 34 H 1.08996 * 109.46931 * 299.99770 * 9 7 6 35 35 H 1.07994 * 120.78944 * 359.96926 * 11 10 9 36 36 H 1.07997 * 120.42083 * 179.72800 * 12 11 10 37 37 H 1.07999 * 119.61954 * 180.02562 * 13 12 11 38 38 H 1.08002 * 119.61237 * 179.97438 * 15 14 13 39 39 H 0.97001 * 119.99645 * 265.00323 * 16 2 1 40 40 H 0.97000 * 119.99793 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3042 2.5096 7 6 5.3741 -1.3396 2.7753 8 8 6.1584 -0.7997 2.0240 9 6 5.8765 -2.0500 4.0057 10 6 7.3783 -1.9438 4.0691 11 6 8.1763 -2.9058 3.4684 12 6 9.5531 -2.7700 3.5566 13 6 10.0810 -1.6850 4.2311 14 7 9.2915 -0.7863 4.7857 15 6 7.9778 -0.8834 4.7217 16 7 2.0184 -0.6905 -1.1962 17 6 2.1491 -0.0075 -2.3758 18 1 1.8926 1.0406 -2.4242 19 6 2.6114 -0.6619 -3.5093 20 7 2.9245 -1.9389 -3.4502 21 14 2.7903 0.2701 -5.1182 22 1 2.3763 1.6826 -4.9208 23 1 4.2072 0.2264 -5.5607 24 1 1.9293 -0.3577 -6.1523 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1369 30 1 3.8532 0.4371 1.3573 31 1 3.9995 -1.0726 0.4259 32 1 3.4259 -1.7357 3.1106 33 1 5.5884 -3.1004 3.9618 34 1 5.4416 -1.5908 4.8934 35 1 7.7356 -3.7433 2.9482 36 1 10.2049 -3.5027 3.1044 37 1 11.1526 -1.5716 4.3039 38 1 7.3634 -0.1278 5.1886 39 1 2.2491 -1.6317 -1.1526 40 1 3.2472 -2.3963 -4.2424 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690839130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:20 Heat of formation + Delta-G solvation = -28.961131 kcal Electronic energy + Delta-G solvation = -20532.640854 eV Core-core repulsion = 17346.059415 eV Total energy + Delta-G solvation = -3186.581439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37145 -40.29985 -38.13514 -35.81327 -34.55609 -34.10419 -32.83521 -31.17063 -29.94938 -28.43010 -25.85999 -24.51191 -24.33408 -23.07241 -21.78739 -21.00464 -19.28691 -18.14276 -17.90201 -17.45289 -17.07312 -16.88159 -16.31983 -15.80756 -15.64386 -15.33374 -15.06196 -14.59621 -14.45101 -14.22999 -14.08136 -13.94910 -13.55892 -13.25550 -13.08754 -12.86209 -12.63365 -12.46847 -12.24780 -12.19712 -12.09165 -11.63658 -11.59830 -11.06035 -10.95029 -10.67268 -10.41723 -10.05654 -9.89754 -8.97896 -7.93754 -5.20064 0.15506 0.36204 1.44821 1.46242 1.55191 1.68171 2.25931 2.56240 2.92562 3.40852 3.50842 3.73075 3.92590 3.93702 4.00218 4.04756 4.09925 4.12633 4.26112 4.39576 4.49756 4.58504 4.67797 4.77105 4.79682 4.87370 4.91919 5.04306 5.12309 5.18792 5.24989 5.31592 5.41021 5.50230 5.54087 5.62615 5.79390 6.29937 6.63813 7.02684 7.34874 7.35912 8.14169 8.35130 9.30027 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.003406 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.852535 B = 8218.199109 C = 9197.894316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.133 3.867 6 N -0.712 5.712 7 C 0.503 3.497 8 O -0.592 6.592 9 C -0.085 4.085 10 C -0.127 4.127 11 C -0.078 4.078 12 C -0.174 4.174 13 C 0.080 3.920 14 N -0.515 5.515 15 C 0.093 3.907 16 N -0.735 5.735 17 C -0.232 4.232 18 H 0.073 0.927 19 C -0.078 4.078 20 N -0.969 5.969 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.299 1.299 24 H -0.292 1.292 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.032 0.968 32 H 0.420 0.580 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.160 0.840 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.372 0.628 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -3.329 21.725 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.058 0.942 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.365 5.365 7 C 0.291 3.709 8 O -0.472 6.472 9 C -0.125 4.125 10 C -0.129 4.129 11 C -0.104 4.104 12 C -0.194 4.194 13 C -0.077 4.077 14 N -0.224 5.224 15 C -0.064 4.064 16 N -0.376 5.376 17 C -0.364 4.364 18 H 0.091 0.909 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.227 1.227 24 H -0.220 1.220 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.257 0.743 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.165 0.835 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.182 0.818 39 H 0.204 0.796 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.397 -2.061 21.531 22.293 hybrid contribution -0.275 -0.780 -1.791 1.973 sum 5.122 -2.841 19.740 20.591 Atomic orbital electron populations 1.22265 0.97101 1.01089 1.00850 1.20476 0.93178 0.95138 0.85812 0.94217 1.21904 0.92460 1.02119 0.98795 1.21052 0.95331 0.95962 0.86817 1.45888 1.07472 1.56515 1.26621 1.21307 0.82133 0.79878 0.87576 1.90756 1.56751 1.47943 1.51790 1.20660 0.90930 1.04394 0.96540 1.20563 0.96508 0.96462 0.99385 1.21844 0.94334 0.98821 0.95352 1.22452 0.96081 1.00323 1.00517 1.23216 1.01102 0.90056 0.93302 1.67668 1.06201 1.28729 1.19820 1.22902 0.91035 0.96117 0.96304 1.42658 1.78375 1.10256 1.06321 1.19629 1.34230 0.94037 0.88488 0.90927 1.25467 1.03358 0.96880 1.01282 1.69809 1.53047 1.10124 1.29102 0.85185 0.76571 0.78346 0.80411 1.19088 1.22652 1.21968 0.95007 0.93533 0.90516 0.90814 0.87510 0.93538 0.94963 0.74276 0.84656 0.83987 0.83530 0.82244 0.80644 0.81844 0.79616 0.94293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.95 2.89 44.99 0.13 6.08 16 3 H 0.04 1.53 8.08 -2.39 -0.02 1.51 16 4 C -0.11 -3.10 4.87 30.59 0.15 -2.96 16 5 C 0.13 4.26 5.56 86.38 0.48 4.74 16 6 N -0.71 -16.33 5.56 -463.05 -2.57 -18.90 16 7 C 0.50 13.21 7.82 87.66 0.69 13.90 16 8 O -0.59 -23.18 16.03 -3.04 -0.05 -23.23 16 9 C -0.09 -1.29 5.85 29.10 0.17 -1.12 16 10 C -0.13 -2.66 4.39 -19.77 -0.09 -2.75 16 11 C -0.08 -1.59 9.86 22.47 0.22 -1.36 16 12 C -0.17 -3.30 10.11 22.36 0.23 -3.07 16 13 C 0.08 1.66 11.18 84.69 0.95 2.61 16 14 N -0.52 -13.08 10.36 -195.83 -2.03 -15.11 16 15 C 0.09 2.15 10.86 84.67 0.92 3.06 16 16 N -0.74 -36.25 4.57 -322.94 -1.48 -37.72 16 17 C -0.23 -12.94 9.93 84.03 0.83 -12.11 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 20 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 21 Si 0.96 47.44 29.55 68.60 2.03 49.47 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.38 7.75 -2.39 -0.02 1.36 16 32 H 0.42 5.68 8.47 -92.71 -0.79 4.90 16 33 H 0.14 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.14 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 37 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 40 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -80.37 344.30 1.54 -78.83 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.47 Total: 27.99 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.83 Total: -1.29 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -5.80 Total: -131.77 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -80.37 1.54 -78.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690839130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.867 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds