Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 5 5 C 1.36935 * 120.00239 * 275.00034 * 4 2 1 6 6 H 1.08004 * 120.00069 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00368 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 359.72375 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72253 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72375 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72186 * 9 7 5 13 13 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 14 14 H 1.08998 * 109.46716 * 174.99405 * 13 2 1 15 15 C 1.52991 * 109.47459 * 294.99745 * 13 2 1 16 16 N 1.46506 * 109.46745 * 55.00261 * 13 2 1 17 17 C 1.34783 * 119.99632 * 154.99832 * 16 13 2 18 18 O 1.21281 * 120.00216 * 359.97438 * 17 16 13 19 19 C 1.50699 * 119.99586 * 179.97438 * 17 16 13 20 20 C 1.50697 * 109.46948 * 179.97438 * 19 17 16 21 21 C 1.38677 * 120.42238 * 269.72520 * 20 19 17 22 22 C 1.38624 * 118.41999 * 179.78331 * 21 20 19 23 23 C 1.38227 * 119.16475 * 0.51067 * 22 21 20 24 24 N 1.31855 * 120.76004 * 359.72894 * 23 22 21 25 25 C 1.31886 * 121.72907 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 27 27 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 28 28 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 29 29 H 0.97004 * 119.99747 * 95.00774 * 4 2 1 30 30 H 0.97000 * 120.00481 * 0.27542 * 8 7 5 31 31 H 1.08993 * 109.47299 * 300.00398 * 15 13 2 32 32 H 1.09001 * 109.46982 * 60.00347 * 15 13 2 33 33 H 1.09003 * 109.47094 * 179.97438 * 15 13 2 34 34 H 0.96997 * 120.00008 * 334.99823 * 16 13 2 35 35 H 1.08994 * 109.47357 * 300.00314 * 19 17 16 36 36 H 1.09007 * 109.46806 * 60.00550 * 19 17 16 37 37 H 1.07997 * 120.78546 * 0.02562 * 21 20 19 38 38 H 1.08001 * 120.41862 * 180.21914 * 22 21 20 39 39 H 1.07992 * 119.61870 * 179.74439 * 23 22 21 40 40 H 1.07995 * 119.61900 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8918 1.0403 2.4244 7 6 2.6122 -0.6617 3.5091 8 7 2.9205 -1.9400 3.4511 9 14 2.7899 0.2699 5.1184 10 1 3.2931 -0.6500 6.1700 11 1 3.7495 1.3891 4.9391 12 1 1.4684 0.8113 5.5254 13 6 2.0400 -0.7212 -1.2492 14 1 3.1263 -0.6442 -1.2951 15 6 1.6354 -2.1954 -1.1880 16 7 1.4559 -0.1035 -2.4423 17 6 2.0914 -0.1936 -3.6275 18 8 3.1470 -0.7856 -3.7062 19 6 1.4902 0.4412 -4.8549 20 6 2.3908 0.1982 -6.0385 21 6 3.3932 1.1026 -6.3556 22 6 4.2005 0.8356 -7.4504 23 6 3.9744 -0.3096 -8.1908 24 7 3.0084 -1.1449 -7.8628 25 6 2.2243 -0.9256 -6.8252 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.2490 -1.6318 1.1526 30 1 2.8279 -2.4240 2.6156 31 1 2.0699 -2.6549 -0.3003 32 1 0.5491 -2.2724 -1.1421 33 1 1.9984 -2.7091 -2.0782 34 1 0.6118 0.3702 -2.3793 35 1 0.5106 0.0039 -5.0475 36 1 1.3840 1.5141 -4.6940 37 1 3.5437 1.9917 -5.7613 38 1 4.9931 1.5162 -7.7243 39 1 4.5962 -0.5226 -9.0476 40 1 1.4437 -1.6329 -6.5871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700389773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = 6.205284 kcal Electronic energy + Delta-G solvation = -20994.738538 eV Core-core repulsion = 17809.682029 eV Total energy + Delta-G solvation = -3185.056509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58858 -39.51309 -37.09212 -34.16937 -33.75030 -32.18433 -31.85004 -29.60007 -28.12469 -27.83918 -24.38284 -23.76604 -23.47175 -22.45828 -20.42854 -19.38943 -17.59294 -17.33460 -17.14451 -16.66168 -15.98234 -15.24816 -14.87035 -14.83885 -14.27882 -14.06755 -13.78118 -13.59327 -13.37951 -13.24437 -13.03615 -12.80592 -12.32504 -11.94836 -11.81418 -11.74603 -11.56600 -10.86835 -10.64213 -10.46042 -10.24844 -10.08031 -10.00447 -9.80282 -9.64313 -9.25339 -9.13512 -8.97770 -8.88721 -7.10975 -6.13922 -3.15052 0.89738 1.10648 2.66674 3.20351 3.49547 3.52953 3.70253 3.70968 4.20043 4.44728 4.56423 4.64676 4.76413 4.79311 4.85479 5.09802 5.16582 5.25760 5.36697 5.44466 5.47034 5.55944 5.61530 5.68127 5.89517 5.93726 6.01899 6.02764 6.15739 6.26283 6.34209 6.49190 6.49727 6.60307 6.78120 6.95778 7.58874 7.76125 7.78492 8.29359 8.71411 9.17215 10.03396 10.17303 11.34082 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036846 B = 0.003089 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.740376 B = 9061.347825 C = 9150.081786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.174 3.826 3 H 0.052 0.948 4 N -0.731 5.731 5 C -0.333 4.333 6 H 0.065 0.935 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.080 2.920 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.295 1.295 13 C 0.135 3.865 14 H 0.086 0.914 15 C -0.158 4.158 16 N -0.719 5.719 17 C 0.510 3.490 18 O -0.534 6.534 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.172 4.172 23 C 0.093 3.907 24 N -0.485 5.485 25 C 0.113 3.887 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.052 0.948 29 H 0.369 0.631 30 H 0.255 0.745 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.398 0.602 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.154 0.846 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 7.048 -20.888 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.063 3.937 3 H 0.070 0.930 4 N -0.376 5.376 5 C -0.464 4.464 6 H 0.083 0.917 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.911 3.089 10 H -0.210 1.210 11 H -0.222 1.222 12 H -0.223 1.223 13 C 0.030 3.970 14 H 0.104 0.896 15 C -0.217 4.217 16 N -0.372 5.372 17 C 0.296 3.704 18 O -0.411 6.411 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.088 4.088 22 C -0.191 4.191 23 C -0.063 4.063 24 N -0.193 5.193 25 C -0.045 4.045 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.205 0.795 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.234 0.766 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.171 0.829 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.418 5.948 -19.790 20.946 hybrid contribution -0.708 0.941 -1.006 1.548 sum -4.125 6.889 -20.796 22.293 Atomic orbital electron populations 1.22516 0.99213 1.01201 0.99853 1.20290 0.92175 0.95518 0.85707 0.93011 1.42458 1.79362 1.09950 1.05817 1.20017 1.42248 0.95183 0.88957 0.91722 1.25788 0.99205 0.97476 1.01657 1.70888 1.51157 1.08207 1.28413 0.83238 0.75865 0.74293 0.75500 1.21003 1.22248 1.22263 1.21326 0.98988 0.92804 0.83858 0.89572 1.22126 1.01541 0.95920 1.02072 1.46238 1.25843 1.56831 1.08331 1.20434 0.85160 0.80486 0.84362 1.90742 1.22378 1.42483 1.85462 1.20627 0.99308 1.03246 0.90912 1.20304 0.97880 0.96559 0.96838 1.21457 0.92995 0.98753 0.95619 1.22109 1.00809 0.99411 0.96804 1.22749 0.94476 0.90414 0.98697 1.67678 1.04892 1.30337 1.16419 1.22591 0.97122 0.94499 0.90244 0.92329 0.94716 0.92927 0.79524 0.93382 0.91099 0.92410 0.92930 0.76600 0.87596 0.87721 0.84953 0.84782 0.82877 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.01 37.16 0.33 -2.40 16 2 C 0.17 3.29 2.93 -67.93 -0.20 3.09 16 3 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 4 N -0.73 -17.76 5.03 -53.43 -0.27 -18.03 16 5 C -0.33 -9.17 9.93 -15.06 -0.15 -9.32 16 6 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 7 C -0.04 -1.25 5.50 -17.43 -0.10 -1.34 16 8 N -0.94 -28.93 13.70 55.49 0.76 -28.17 16 9 Si 1.08 25.65 29.92 -169.99 -5.09 20.57 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.13 2.27 2.62 -67.93 -0.18 2.09 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.62 9.00 37.15 0.33 -2.28 16 16 N -0.72 -9.22 4.99 -53.81 -0.27 -9.49 16 17 C 0.51 6.74 7.79 -10.98 -0.09 6.65 16 18 O -0.53 -9.56 15.70 5.56 0.09 -9.47 16 19 C -0.10 -0.87 5.86 -29.04 -0.17 -1.04 16 20 C -0.11 -1.20 4.39 -104.48 -0.46 -1.66 16 21 C -0.06 -0.62 9.86 -39.28 -0.39 -1.00 16 22 C -0.17 -1.57 10.11 -39.44 -0.40 -1.97 16 23 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 24 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 25 C 0.11 1.28 10.86 -17.55 -0.19 1.09 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 28 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 29 H 0.37 9.27 4.60 -40.82 -0.19 9.08 16 30 H 0.25 7.71 6.77 -40.82 -0.28 7.44 16 31 H 0.07 1.30 6.29 -51.93 -0.33 0.97 16 32 H 0.06 0.88 6.57 -51.93 -0.34 0.53 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 3.99 6.58 -40.82 -0.27 3.72 16 35 H 0.11 0.65 8.09 -51.93 -0.42 0.23 16 36 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 331.91 15.07 5.00 5.00 Total: -1.00 -34.93 331.91 -7.22 -42.15 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.47 Total: 10.88 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -1.84 Total: -7.35 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.09 Total: -61.79 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.09 Total: 20.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.93 -7.22 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700389773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.357 kcal (2) G-P(sol) polarization free energy of solvation -34.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds