Wall clock time and date at job start Mon Mar 30 2020 02:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 N 1.46499 * 109.47042 * 120.00120 * 2 1 3 5 5 C 1.34774 * 119.99473 * 274.99639 * 4 2 1 6 6 O 1.21279 * 120.00716 * 0.02562 * 5 4 2 7 7 C 1.50708 * 119.99715 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.46937 * 179.97438 * 7 5 4 9 9 C 1.38672 * 120.42077 * 269.71666 * 8 7 5 10 10 C 1.38626 * 118.41896 * 179.78543 * 9 8 7 11 11 C 1.38221 * 119.16383 * 0.51786 * 10 9 8 12 12 N 1.31858 * 120.76376 * 359.72303 * 11 10 9 13 13 C 1.31889 * 121.72191 * 0.02562 * 12 11 10 14 14 C 1.53004 * 109.46906 * 239.99777 * 2 1 3 15 15 H 1.09002 * 109.47194 * 300.00164 * 14 2 1 16 16 C 1.52995 * 109.46864 * 179.97438 * 14 2 1 17 17 N 1.46499 * 109.46824 * 59.99935 * 14 2 1 18 18 C 1.36935 * 119.99926 * 204.99960 * 17 14 2 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 14 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 14 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47050 * 59.99408 * 22 20 18 24 24 H 1.48496 * 109.47289 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46855 * 299.99389 * 22 20 18 26 26 H 1.09001 * 109.46902 * 299.99810 * 1 2 3 27 27 H 1.08998 * 109.46903 * 60.00198 * 1 2 3 28 28 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99958 * 94.99865 * 4 2 1 30 30 H 1.09000 * 109.46827 * 300.00154 * 7 5 4 31 31 H 1.09002 * 109.46986 * 60.00156 * 7 5 4 32 32 H 1.07999 * 120.79111 * 0.02917 * 9 8 7 33 33 H 1.07999 * 120.41763 * 180.22654 * 10 9 8 34 34 H 1.07999 * 119.62373 * 179.75199 * 11 10 9 35 35 H 1.07999 * 119.61404 * 180.02562 * 13 12 11 36 36 H 1.09002 * 109.47544 * 300.00188 * 16 14 2 37 37 H 1.09007 * 109.47281 * 60.00379 * 16 14 2 38 38 H 1.09003 * 109.47025 * 179.97438 * 16 14 2 39 39 H 0.97005 * 120.00261 * 25.00085 * 17 14 2 40 40 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0182 2.3570 6 8 1.8583 1.1584 2.4117 7 6 2.6500 -0.7285 3.5874 8 6 2.7012 0.2401 4.7409 9 6 3.8501 0.9758 4.9895 10 6 3.8501 1.8580 6.0588 11 6 2.7168 1.9663 6.8426 12 7 1.6435 1.2469 6.5796 13 6 1.6061 0.4016 5.5679 14 6 2.0400 -0.7213 -1.2493 15 1 1.6767 -1.7490 -1.2492 16 6 3.5700 -0.7208 -1.2496 17 7 1.5516 -0.0307 -2.4454 18 6 1.4208 -0.7138 -3.6249 19 1 1.6780 -1.7617 -3.6735 20 6 0.9527 -0.0610 -4.7570 21 7 0.6342 1.2147 -4.6964 22 14 0.7735 -0.9930 -6.3659 23 1 -0.1770 -2.1191 -6.1823 24 1 0.2578 -0.0764 -7.4142 25 1 2.0969 -1.5247 -6.7799 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.2490 -1.6318 1.1526 30 1 1.9778 -1.5508 3.8325 31 1 3.6493 -1.1203 3.3978 32 1 4.7227 0.8670 4.3625 33 1 4.7262 2.4497 6.2795 34 1 2.7100 2.6483 7.6800 35 1 0.7088 -0.1704 5.3832 36 1 3.9330 0.3070 -1.2498 37 1 3.9337 -1.2344 -0.3596 38 1 3.9333 -1.2350 -2.1393 39 1 1.3209 0.9105 -2.4019 40 1 0.3067 1.6709 -5.4874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700389776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:07 Heat of formation + Delta-G solvation = -21.731508 kcal Electronic energy + Delta-G solvation = -20949.469300 eV Core-core repulsion = 17763.201361 eV Total energy + Delta-G solvation = -3186.267939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39724 -40.45416 -38.24339 -35.56554 -34.52811 -33.50202 -32.79057 -31.16284 -30.13066 -28.64849 -25.90445 -24.57367 -24.47948 -23.22360 -21.51317 -21.24118 -19.35628 -18.16898 -17.93618 -17.39645 -17.06939 -16.57974 -16.09247 -15.74342 -15.42520 -15.20308 -14.89952 -14.71748 -14.41946 -14.16225 -14.05257 -13.91405 -13.52254 -13.27618 -12.95744 -12.91546 -12.69622 -12.57767 -12.41103 -12.23116 -12.20076 -11.72235 -11.44562 -11.02117 -10.95272 -10.64323 -10.38526 -10.04349 -9.87221 -9.00448 -7.91252 -5.20252 0.18319 0.39386 1.49318 1.51852 1.57773 1.72525 2.21623 2.60561 2.94862 3.42939 3.53595 3.75159 3.80824 3.96234 4.00634 4.10356 4.14500 4.15344 4.23948 4.37949 4.52783 4.61033 4.62163 4.78994 4.83477 4.89182 4.91908 4.98955 5.07344 5.21480 5.22222 5.32399 5.34221 5.52397 5.54174 5.63493 5.82263 6.29558 6.66950 7.05801 7.35582 7.37159 8.10054 8.32597 9.32199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045231 B = 0.003040 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.891889 B = 9208.145884 C = 9323.894146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.151 3.849 3 H 0.054 0.946 4 N -0.704 5.704 5 C 0.511 3.489 6 O -0.586 6.586 7 C -0.088 4.088 8 C -0.124 4.124 9 C -0.075 4.075 10 C -0.173 4.173 11 C 0.078 3.922 12 N -0.517 5.517 13 C 0.091 3.909 14 C 0.167 3.833 15 H 0.063 0.937 16 C -0.154 4.154 17 N -0.732 5.732 18 C -0.233 4.233 19 H 0.081 0.919 20 C -0.078 4.078 21 N -0.972 5.972 22 Si 0.971 3.029 23 H -0.277 1.277 24 H -0.301 1.301 25 H -0.278 1.278 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.417 0.583 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.029 0.971 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.370 0.630 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.076 -7.156 21.819 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.045 3.955 3 H 0.072 0.928 4 N -0.356 5.356 5 C 0.299 3.701 6 O -0.466 6.466 7 C -0.128 4.128 8 C -0.126 4.126 9 C -0.101 4.101 10 C -0.192 4.192 11 C -0.078 4.078 12 N -0.226 5.226 13 C -0.065 4.065 14 C 0.059 3.941 15 H 0.081 0.919 16 C -0.214 4.214 17 N -0.373 5.373 18 C -0.364 4.364 19 H 0.099 0.901 20 C -0.270 4.270 21 N -0.623 5.623 22 Si 0.801 3.199 23 H -0.203 1.203 24 H -0.228 1.228 25 H -0.204 1.204 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.255 0.745 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.192 0.808 35 H 0.177 0.823 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.202 0.798 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.129 -6.395 22.264 24.237 hybrid contribution 0.359 0.049 -1.848 1.883 sum 7.488 -6.346 20.417 22.654 Atomic orbital electron populations 1.21922 0.95485 1.02106 1.00625 1.20834 0.93830 0.96224 0.84597 0.92777 1.45833 1.66657 1.14681 1.08467 1.21174 0.76876 0.86920 0.85128 1.90734 1.51780 1.18494 1.85607 1.20671 1.06711 0.97504 0.87875 1.20531 0.95248 0.99551 0.97307 1.21842 0.98392 0.93517 0.96314 1.22448 1.00849 0.99767 0.96152 1.23208 0.88607 0.96615 0.99414 1.67661 1.28999 1.06891 1.19032 1.22868 0.97944 0.95155 0.90574 1.20587 0.93035 0.95610 0.84908 0.91919 1.22299 0.97390 1.00435 1.01257 1.42501 1.78508 1.10208 1.06046 1.19564 1.34583 0.94323 0.87961 0.90082 1.25544 1.03083 0.96835 1.01507 1.69825 1.52497 1.10487 1.29472 0.85243 0.77941 0.77277 0.79480 1.20267 1.22783 1.20413 0.93606 0.93426 0.91540 0.74525 0.84508 0.84392 0.83105 0.82136 0.80821 0.82272 0.95142 0.90280 0.93969 0.79798 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.33 71.98 0.67 -4.22 16 2 C 0.15 4.91 2.21 45.00 0.10 5.01 16 3 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 4 N -0.70 -15.79 4.38 -442.52 -1.94 -17.73 16 5 C 0.51 12.19 7.79 87.66 0.68 12.87 16 6 O -0.59 -20.55 15.70 -3.03 -0.05 -20.60 16 7 C -0.09 -1.19 5.86 29.10 0.17 -1.02 16 8 C -0.12 -2.36 4.39 -19.77 -0.09 -2.45 16 9 C -0.07 -1.31 9.86 22.47 0.22 -1.09 16 10 C -0.17 -2.84 10.11 22.36 0.23 -2.62 16 11 C 0.08 1.50 11.18 84.68 0.95 2.45 16 12 N -0.52 -12.53 10.36 -195.85 -2.03 -14.56 16 13 C 0.09 2.00 10.86 84.67 0.92 2.92 16 14 C 0.17 5.98 2.52 44.99 0.11 6.09 16 15 H 0.06 2.11 8.08 -2.39 -0.02 2.10 16 16 C -0.15 -4.92 9.33 71.98 0.67 -4.25 16 17 N -0.73 -35.38 4.43 -322.94 -1.43 -36.81 16 18 C -0.23 -12.35 9.93 84.03 0.83 -11.51 16 19 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 20 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 21 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 22 Si 0.97 45.33 29.55 68.60 2.03 47.36 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.42 6.19 8.39 -92.71 -0.78 5.41 16 30 H 0.14 1.05 8.09 -2.39 -0.02 1.04 16 31 H 0.14 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.82 7.45 -2.38 -0.02 1.81 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.37 19.95 7.58 -92.70 -0.70 19.25 16 40 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -75.09 341.32 2.36 -72.73 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.44 Total: 30.45 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.94 Total: -1.73 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.12 Total: -128.21 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.09 2.36 -72.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700389776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.997 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds