Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.29330 * 2 1 4 4 C 1.54011 * 110.32474 * 122.13499 * 2 1 3 5 5 N 1.47481 * 107.08286 * 120.29944 * 4 2 1 6 6 C 1.34775 * 127.03439 * 154.51606 * 5 4 2 7 7 O 1.21627 * 120.00478 * 185.59444 * 6 5 4 8 8 C 1.47269 * 119.99993 * 5.59589 * 6 5 4 9 9 C 1.46694 * 126.93919 * 6.82413 * 8 6 5 10 10 C 1.34486 * 106.32978 * 180.29755 * 9 8 6 11 11 N 1.36449 * 108.85450 * 359.75649 * 10 9 8 12 12 H 0.97002 * 124.84404 * 179.97438 * 11 10 9 13 13 C 1.34651 * 110.30002 * 0.02562 * 11 10 9 14 14 C 1.48116 * 105.93516 * 334.77885 * 5 4 2 15 15 C 1.54599 * 103.42421 * 39.02179 * 14 5 4 16 16 H 1.09001 * 110.57048 * 81.16800 * 15 14 5 17 17 C 1.52997 * 110.99044 * 204.37489 * 15 14 5 18 18 N 1.46501 * 109.47236 * 288.65390 * 17 15 14 19 19 C 1.36936 * 120.00005 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99791 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99864 * 180.02562 * 19 18 17 22 22 N 1.31609 * 120.00390 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99928 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46778 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47325 * 119.99452 * 23 21 19 26 26 H 1.48501 * 109.46924 * 239.99563 * 23 21 19 27 27 H 1.08999 * 109.46729 * 299.32384 * 1 2 3 28 28 H 1.09002 * 109.47115 * 59.31699 * 1 2 3 29 29 H 1.08997 * 109.47356 * 179.31969 * 1 2 3 30 30 H 1.08990 * 109.91117 * 0.93585 * 4 2 1 31 31 H 1.09000 * 110.06919 * 239.74664 * 4 2 1 32 32 H 1.08001 * 126.83286 * 0.02562 * 9 8 6 33 33 H 1.08001 * 125.57158 * 179.75319 * 10 9 8 34 34 H 1.08008 * 125.80244 * 179.97438 * 13 11 10 35 35 H 1.08994 * 110.66556 * 157.51115 * 14 5 4 36 36 H 1.09007 * 110.65997 * 280.62726 * 14 5 4 37 37 H 1.09001 * 109.46984 * 48.65534 * 17 15 14 38 38 H 1.09007 * 109.47022 * 168.65289 * 17 15 14 39 39 H 0.97000 * 119.99586 * 359.97438 * 18 17 15 40 40 H 0.96999 * 120.00769 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7682 1.2230 5 7 2.8824 -1.8836 0.7104 6 6 3.8946 -2.5070 1.3454 7 8 4.5517 -3.3484 0.7628 8 6 4.2049 -2.1693 2.7449 9 6 3.4347 -1.2901 3.6313 10 6 4.0896 -1.2696 4.8057 11 7 5.1921 -2.0678 4.7099 12 1 5.8301 -2.2199 5.4246 13 6 5.2685 -2.6133 3.4812 14 6 2.3677 -2.1743 -0.6477 15 6 2.0693 -0.7721 -1.2263 16 1 2.9824 -0.3105 -1.6019 17 6 1.0100 -0.8477 -2.3277 18 7 1.5870 -1.4778 -3.5177 19 6 0.8208 -1.6536 -4.6390 20 1 -0.2090 -1.3282 -4.6458 21 6 1.3674 -2.2511 -5.7664 22 7 2.6222 -2.6481 -5.7579 23 14 0.3220 -2.4916 -7.2958 24 1 -1.0441 -1.9641 -7.0494 25 1 0.9363 -1.7635 -8.4348 26 1 0.2427 -3.9390 -7.6184 27 1 -0.3633 0.5033 0.8960 28 1 -0.3633 0.5244 -0.8838 29 1 -0.3634 -1.0276 -0.0122 30 1 1.2331 -1.1568 1.8102 31 1 2.6786 -0.1106 1.8387 32 1 2.5254 -0.7608 3.3876 33 1 3.7916 -0.7124 5.6816 34 1 6.0408 -3.2841 3.1346 35 1 3.1243 -2.6830 -1.2451 36 1 1.4551 -2.7682 -0.5942 37 1 0.1636 -1.4388 -1.9778 38 1 0.6723 0.1584 -2.5767 39 1 2.5120 -1.7697 -3.5117 40 1 3.0043 -3.0653 -6.5458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724585118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 4.879522 kcal Electronic energy + Delta-G solvation = -21386.839957 eV Core-core repulsion = 18201.725958 eV Total energy + Delta-G solvation = -3185.113999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.06560 -40.80513 -38.93827 -36.42218 -34.31641 -32.81946 -32.12799 -30.32788 -30.03472 -27.63214 -26.93892 -25.18964 -23.68229 -22.58275 -21.57337 -20.29172 -20.04769 -19.35904 -18.70701 -17.43762 -17.01588 -16.50234 -16.31125 -15.92088 -15.39785 -15.27342 -14.96513 -14.67304 -14.46121 -14.20295 -14.01756 -13.82777 -13.44932 -13.27023 -13.09455 -12.98289 -12.80883 -12.76860 -12.53831 -12.07494 -11.83663 -11.59017 -11.47260 -11.30095 -10.97824 -10.89754 -9.85949 -9.63818 -9.22434 -8.98163 -7.93143 -5.22865 0.77407 1.47239 1.49098 1.59160 1.60259 1.99460 2.51529 2.55239 2.57274 3.39751 3.49008 3.64136 3.88718 4.03061 4.14656 4.19535 4.28830 4.38888 4.44018 4.52951 4.58268 4.62048 4.70869 4.83531 4.86084 4.95948 5.02334 5.03455 5.07812 5.24483 5.27808 5.35341 5.41270 5.51961 5.59005 5.78825 5.99746 6.28370 6.63807 6.74136 7.24303 7.33681 8.10601 8.32469 9.31018 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031074 B = 0.003684 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.849021 B = 7599.077293 C = 8362.848152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.101 0.899 4 C 0.104 3.896 5 N -0.617 5.617 6 C 0.591 3.409 7 O -0.611 6.611 8 C -0.265 4.265 9 C -0.194 4.194 10 C 0.000 4.000 11 N -0.535 5.535 12 H 0.436 0.564 13 C 0.070 3.930 14 C 0.120 3.880 15 C -0.096 4.096 16 H 0.061 0.939 17 C 0.168 3.832 18 N -0.751 5.751 19 C -0.241 4.241 20 H 0.081 0.919 21 C -0.081 4.081 22 N -0.974 5.974 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.294 1.294 26 H -0.296 1.296 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.211 0.789 34 H 0.178 0.822 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.369 0.631 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 7.869 27.864 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.120 0.880 4 C -0.017 4.017 5 N -0.348 5.348 6 C 0.385 3.615 7 O -0.495 6.495 8 C -0.275 4.275 9 C -0.217 4.217 10 C -0.128 4.128 11 N -0.131 5.131 12 H 0.277 0.723 13 C -0.068 4.068 14 C -0.003 4.003 15 C -0.116 4.116 16 H 0.080 0.920 17 C 0.042 3.958 18 N -0.393 5.393 19 C -0.373 4.373 20 H 0.099 0.901 21 C -0.273 4.273 22 N -0.625 5.625 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.221 1.221 26 H -0.223 1.223 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.184 0.816 33 H 0.228 0.772 34 H 0.195 0.805 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.200 0.800 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.149 7.427 27.686 28.665 hybrid contribution 0.544 -0.868 -1.379 1.718 sum 0.693 6.559 26.307 27.121 Atomic orbital electron populations 1.21888 0.92717 1.02140 1.03174 1.22096 0.97552 0.99649 0.91604 0.88049 1.22735 0.94904 0.87526 0.96538 1.48633 1.33393 1.35881 1.16924 1.17773 0.77860 0.79610 0.86242 1.90744 1.52174 1.37046 1.69523 1.20286 1.02981 1.11049 0.93165 1.22689 1.02693 1.03189 0.93167 1.22455 0.89359 0.99959 1.00997 1.41670 1.23012 1.36608 1.11826 0.72325 1.21886 0.99647 0.99757 0.85535 1.22202 0.97858 0.97528 0.82736 1.22279 0.98781 0.94833 0.95726 0.92008 1.20864 0.94178 0.95724 0.85076 1.42722 1.12530 1.72521 1.11538 1.19717 0.95025 1.31104 0.91430 0.90089 1.25646 0.97570 1.02357 1.01748 1.69856 1.14482 1.48176 1.29966 0.85028 0.78423 0.76789 0.79256 1.18515 1.22092 1.22315 0.89565 0.92249 0.93176 0.89327 0.87945 0.81571 0.77194 0.80480 0.93950 0.91239 0.94969 0.94915 0.79951 0.94154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 7.79 71.98 0.56 -2.23 16 2 C -0.09 -2.04 3.53 -9.90 -0.03 -2.08 16 3 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 4 C 0.10 2.24 4.91 86.53 0.42 2.67 16 5 N -0.62 -19.86 3.29 -814.13 -2.68 -22.54 16 6 C 0.59 21.12 7.87 86.62 0.68 21.80 16 7 O -0.61 -27.69 17.11 -4.12 -0.07 -27.76 16 8 C -0.26 -6.81 6.19 -19.04 -0.12 -6.93 16 9 C -0.19 -3.29 9.32 23.62 0.22 -3.07 16 10 C 0.00 0.00 11.89 83.12 0.99 0.99 16 11 N -0.54 -5.71 5.90 -194.56 -1.15 -6.85 16 12 H 0.44 1.23 8.96 -92.71 -0.83 0.40 16 13 C 0.07 1.40 11.70 83.91 0.98 2.38 16 14 C 0.12 4.52 6.47 86.61 0.56 5.08 16 15 C -0.10 -3.28 2.98 -9.70 -0.03 -3.31 16 16 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 17 C 0.17 6.72 4.45 86.38 0.38 7.10 16 18 N -0.75 -40.00 5.52 -343.45 -1.90 -41.90 16 19 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 22 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16 23 Si 0.98 47.67 29.55 68.60 2.03 49.70 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 26 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.06 1.28 6.77 -2.39 -0.02 1.26 16 29 H 0.05 1.09 7.52 -2.39 -0.02 1.08 16 30 H 0.09 1.55 7.41 -2.39 -0.02 1.53 16 31 H 0.10 1.77 5.83 -2.39 -0.01 1.76 16 32 H 0.17 2.18 5.27 -2.91 -0.02 2.17 16 33 H 0.21 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.18 3.34 8.06 -2.91 -0.02 3.32 16 35 H 0.04 1.96 7.81 -2.39 -0.02 1.94 16 36 H 0.07 2.60 7.95 -2.38 -0.02 2.59 16 37 H 0.03 1.26 6.82 -2.39 -0.02 1.25 16 38 H 0.03 1.27 7.38 -2.38 -0.02 1.26 16 39 H 0.37 21.56 7.67 -92.71 -0.71 20.85 16 40 H 0.25 15.60 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -83.14 324.39 1.97 -81.17 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.47 Total: 25.83 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.93 Total: 4.96 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -5.44 Total: -133.90 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.07 Total: -27.76 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -83.14 1.97 -81.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724585118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.054 kcal (2) G-P(sol) polarization free energy of solvation -83.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds