Wall clock time and date at job start Mon Mar 30 2020 02:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.79791 * 2 1 4 4 C 1.54938 * 110.74114 * 123.29157 * 2 1 3 5 5 N 1.48115 * 103.25830 * 155.71685 * 4 2 1 6 6 C 1.34777 * 127.03656 * 140.67229 * 5 4 2 7 7 O 1.21623 * 120.00342 * 354.48091 * 6 5 4 8 8 C 1.47268 * 119.99911 * 174.47792 * 6 5 4 9 9 C 1.46689 * 126.94187 * 352.99183 * 8 6 5 10 10 C 1.34485 * 106.33055 * 179.82472 * 9 8 6 11 11 N 1.36450 * 108.85553 * 0.43597 * 10 9 8 12 12 H 0.96997 * 124.84609 * 179.69144 * 11 10 9 13 13 C 1.34652 * 110.29822 * 359.70870 * 11 10 9 14 14 C 1.47489 * 105.92885 * 320.70969 * 5 4 2 15 15 C 1.54000 * 107.08656 * 25.44392 * 14 5 4 16 16 H 1.08997 * 110.32780 * 239.70400 * 15 14 5 17 17 C 1.52999 * 110.32291 * 117.58602 * 15 14 5 18 18 N 1.46494 * 109.47084 * 66.45783 * 17 15 14 19 19 C 1.36944 * 120.00137 * 180.26893 * 18 17 15 20 20 H 1.08006 * 119.99883 * 359.72933 * 19 18 17 21 21 C 1.38807 * 120.00109 * 179.72334 * 19 18 17 22 22 N 1.31620 * 120.00347 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99918 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46935 * 60.00034 * 23 21 19 25 25 H 1.48495 * 109.46969 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46967 * 299.99846 * 23 21 19 27 27 H 1.08997 * 109.47012 * 183.29244 * 1 2 3 28 28 H 1.08998 * 109.46945 * 303.28669 * 1 2 3 29 29 H 1.08998 * 109.46999 * 63.28714 * 1 2 3 30 30 H 1.09000 * 110.66468 * 37.27235 * 4 2 1 31 31 H 1.09002 * 110.80732 * 274.22425 * 4 2 1 32 32 H 1.08003 * 126.83462 * 359.97438 * 9 8 6 33 33 H 1.08004 * 125.57021 * 180.14288 * 10 9 8 34 34 H 1.08001 * 125.80091 * 180.02562 * 13 11 10 35 35 H 1.09006 * 109.90857 * 266.08590 * 14 5 4 36 36 H 1.08999 * 110.07333 * 144.89933 * 14 5 4 37 37 H 1.08999 * 109.47472 * 306.45404 * 17 15 14 38 38 H 1.09004 * 109.47080 * 186.45605 * 17 15 14 39 39 H 0.96994 * 120.00157 * 0.02562 * 18 17 15 40 40 H 0.96994 * 120.00264 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 1.2112 5 7 3.4280 -1.2098 0.7623 6 6 4.5539 -1.2470 1.5022 7 8 4.5469 -0.8225 2.6419 8 6 5.7926 -1.8018 0.9306 9 6 5.9408 -2.4797 -0.3618 10 6 7.2399 -2.8108 -0.4683 11 7 7.8935 -2.3992 0.6565 12 1 8.8405 -2.5249 0.8245 13 6 7.0360 -1.7941 1.5001 14 6 3.2875 -1.5727 -0.6604 15 6 2.0776 -0.7937 -1.2087 16 1 1.3218 -1.4834 -1.5845 17 6 2.5200 0.1639 -2.3169 18 7 2.9887 -0.6076 -3.4707 19 6 3.4426 0.0399 -4.5887 20 1 3.4509 1.1194 -4.6216 21 6 3.8920 -0.6912 -5.6797 22 7 3.8815 -2.0067 -5.6399 23 14 4.5118 0.1921 -7.2046 24 1 5.6706 1.0479 -6.8442 25 1 4.9307 -0.8075 -8.2197 26 1 3.4261 1.0380 -7.7623 27 1 -0.3633 -1.0259 0.0590 28 1 -0.3633 0.5640 0.8591 29 1 -0.3633 0.4619 -0.9180 30 1 1.4560 -1.6668 1.4131 31 1 2.1456 -0.1593 2.0938 32 1 5.1621 -2.6722 -1.0850 33 1 7.6910 -3.3232 -1.3052 34 1 7.2875 -1.3738 2.4627 35 1 3.1126 -2.6445 -0.7545 36 1 4.1877 -1.2941 -1.2082 37 1 3.3286 0.7959 -1.9497 38 1 1.6778 0.7883 -2.6153 39 1 2.9809 -1.5771 -3.4413 40 1 4.1960 -2.5176 -6.4021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724585119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:13 Heat of formation + Delta-G solvation = 4.511667 kcal Electronic energy + Delta-G solvation = -21745.524081 eV Core-core repulsion = 18560.394131 eV Total energy + Delta-G solvation = -3185.129950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.07827 -40.73635 -38.84638 -36.32989 -34.21629 -33.22612 -31.81153 -30.50027 -30.04973 -27.50211 -27.05639 -25.11820 -23.43258 -22.15736 -21.63798 -21.00909 -20.01794 -19.18215 -18.99906 -17.17852 -17.09997 -16.60937 -16.25869 -15.63938 -15.36345 -15.19813 -14.93852 -14.80168 -14.56926 -14.21272 -13.91560 -13.86029 -13.51914 -13.29278 -13.02107 -12.96016 -12.73891 -12.67113 -12.49615 -12.16372 -11.89244 -11.73438 -11.48568 -11.32290 -11.00622 -10.87036 -9.85123 -9.64121 -9.24397 -8.94334 -7.90097 -5.17963 0.77260 1.50006 1.51810 1.54068 1.57890 2.02486 2.47662 2.54263 2.59334 3.42722 3.48623 3.63506 3.80312 4.01684 4.12737 4.25854 4.27782 4.39983 4.47742 4.52027 4.58052 4.62505 4.71461 4.82861 4.85165 4.96390 4.99223 5.02019 5.10490 5.21303 5.26156 5.32304 5.36734 5.52963 5.60745 5.75107 5.97648 6.31927 6.57454 6.69930 7.23087 7.39428 8.13316 8.39468 9.32615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.006002 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.200954 B = 4663.664586 C = 6446.261741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.090 4.090 3 H 0.075 0.925 4 C 0.109 3.891 5 N -0.617 5.617 6 C 0.602 3.398 7 O -0.597 6.597 8 C -0.272 4.272 9 C -0.196 4.196 10 C -0.009 4.009 11 N -0.533 5.533 12 H 0.437 0.563 13 C 0.082 3.918 14 C 0.111 3.889 15 C -0.096 4.096 16 H 0.092 0.908 17 C 0.166 3.834 18 N -0.739 5.739 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.067 4.067 22 N -0.963 5.963 23 Si 0.966 3.034 24 H -0.282 1.282 25 H -0.294 1.294 26 H -0.280 1.280 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.195 0.805 34 H 0.195 0.805 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.008 0.992 38 H 0.025 0.975 39 H 0.377 0.623 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.490 -1.483 13.849 14.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.013 4.013 5 N -0.348 5.348 6 C 0.396 3.604 7 O -0.481 6.481 8 C -0.282 4.282 9 C -0.219 4.219 10 C -0.138 4.138 11 N -0.129 5.129 12 H 0.278 0.722 13 C -0.056 4.056 14 C -0.012 4.012 15 C -0.115 4.115 16 H 0.111 0.889 17 C 0.039 3.961 18 N -0.382 5.382 19 C -0.378 4.378 20 H 0.087 0.913 21 C -0.260 4.260 22 N -0.613 5.613 23 Si 0.796 3.204 24 H -0.208 1.208 25 H -0.220 1.220 26 H -0.207 1.207 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.212 0.788 34 H 0.212 0.788 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.026 0.974 38 H 0.043 0.957 39 H 0.210 0.790 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.753 -1.167 14.366 14.674 hybrid contribution 0.717 -0.009 -1.133 1.341 sum 3.471 -1.175 13.233 13.731 Atomic orbital electron populations 1.21695 0.91724 1.02981 1.02689 1.22225 0.97632 0.98699 0.92387 0.90702 1.22657 0.81828 0.99187 0.97625 1.48593 1.08566 1.65741 1.11913 1.17362 0.82296 0.76963 0.83786 1.90682 1.85793 1.51782 1.19825 1.20404 0.93859 1.14441 0.99471 1.22609 0.97681 1.04680 0.96948 1.22207 0.92652 1.06032 0.92877 1.41611 1.11826 1.44768 1.14689 0.72217 1.22019 0.88427 0.98284 0.96889 1.22382 0.99533 0.98929 0.80335 1.22301 0.96763 0.97536 0.94922 0.88933 1.20763 0.95517 0.93248 0.86554 1.42474 1.76857 1.05562 1.13271 1.19520 1.33480 0.91482 0.93318 0.91292 1.25422 1.03204 0.96181 1.01145 1.69776 1.54579 1.05226 1.31718 0.85324 0.78255 0.77201 0.79635 1.20821 1.21965 1.20653 0.91417 0.90850 0.92208 0.89434 0.90334 0.84103 0.78833 0.78791 0.91188 0.90697 0.97418 0.95720 0.79036 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.16 71.98 0.66 -1.99 16 2 C -0.09 -2.30 3.21 -9.58 -0.03 -2.33 16 3 H 0.07 2.06 7.86 -2.39 -0.02 2.04 16 4 C 0.11 2.91 6.55 86.73 0.57 3.48 16 5 N -0.62 -20.01 3.29 -813.44 -2.68 -22.69 16 6 C 0.60 21.54 7.87 86.62 0.68 22.22 16 7 O -0.60 -23.77 17.11 -4.10 -0.07 -23.84 16 8 C -0.27 -8.61 6.19 -19.04 -0.12 -8.73 16 9 C -0.20 -5.99 9.32 23.62 0.22 -5.77 16 10 C -0.01 -0.22 11.89 83.12 0.99 0.77 16 11 N -0.53 -9.81 5.90 -194.56 -1.15 -10.96 16 12 H 0.44 4.19 8.96 -92.71 -0.83 3.36 16 13 C 0.08 1.98 11.70 83.92 0.98 2.97 16 14 C 0.11 3.62 4.59 86.53 0.40 4.02 16 15 C -0.10 -3.00 2.64 -9.90 -0.03 -3.02 16 16 H 0.09 2.80 7.85 -2.39 -0.02 2.78 16 17 C 0.17 6.57 5.34 86.38 0.46 7.03 16 18 N -0.74 -36.38 5.33 -343.45 -1.83 -38.21 16 19 C -0.25 -13.56 9.99 84.03 0.84 -12.72 16 20 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 22 N -0.96 -56.83 13.06 21.65 0.28 -56.55 16 23 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 2.03 8.02 -2.39 -0.02 2.01 16 31 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 32 H 0.14 4.70 5.27 -2.91 -0.02 4.69 16 33 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 34 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.07 2.18 7.86 -2.38 -0.02 2.16 16 36 H 0.07 2.84 5.28 -2.39 -0.01 2.83 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.38 19.35 7.51 -92.71 -0.70 18.66 16 40 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.62 328.86 2.21 -69.41 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -0.47 Total: 32.77 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.09 Total: 2.64 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -5.37 Total: -128.40 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.84 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -71.62 2.21 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724585119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.918 kcal (2) G-P(sol) polarization free energy of solvation -71.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds