Wall clock time and date at job start Mon Mar 30 2020 02:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.88417 * 2 1 4 4 C 1.55121 * 111.19198 * 236.06651 * 2 1 3 5 5 N 1.47428 * 104.72370 * 279.19424 * 4 2 1 6 6 C 1.34774 * 125.65148 * 155.82106 * 5 4 2 7 7 O 1.21633 * 119.99732 * 4.40944 * 6 5 4 8 8 C 1.47260 * 120.00220 * 184.41199 * 6 5 4 9 9 C 1.46692 * 126.94233 * 354.49265 * 8 6 5 10 10 C 1.34483 * 106.32859 * 180.30082 * 9 8 6 11 11 N 1.36439 * 108.85967 * 359.75194 * 10 9 8 12 12 H 0.97009 * 124.84977 * 180.02562 * 11 10 9 13 13 C 1.34658 * 110.29988 * 0.02562 * 11 10 9 14 14 C 1.47022 * 108.70201 * 335.55176 * 5 4 2 15 15 C 1.54327 * 107.26812 * 1.28594 * 14 5 4 16 16 H 1.08996 * 110.72019 * 263.82810 * 15 14 5 17 17 C 1.53006 * 110.71734 * 140.55691 * 15 14 5 18 18 N 1.46497 * 109.47141 * 66.45063 * 17 15 14 19 19 C 1.36936 * 119.99913 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00425 * 0.02562 * 19 18 17 21 21 C 1.38820 * 120.00122 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99765 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00029 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47050 * 90.00450 * 23 21 19 25 25 H 1.48508 * 109.47011 * 209.99870 * 23 21 19 26 26 H 1.48497 * 109.47405 * 330.00313 * 23 21 19 27 27 H 1.09005 * 109.47038 * 296.11733 * 1 2 3 28 28 H 1.08994 * 109.47109 * 56.11892 * 1 2 3 29 29 H 1.08999 * 109.47291 * 176.11973 * 1 2 3 30 30 H 1.09000 * 110.49815 * 160.35203 * 4 2 1 31 31 H 1.08999 * 110.34447 * 37.95662 * 4 2 1 32 32 H 1.08000 * 126.83188 * 0.08964 * 9 8 6 33 33 H 1.08003 * 125.56554 * 179.75911 * 10 9 8 34 34 H 1.08004 * 125.79917 * 180.02562 * 13 11 10 35 35 H 1.08992 * 109.88500 * 120.70485 * 14 5 4 36 36 H 1.09000 * 109.88270 * 241.87458 * 14 5 4 37 37 H 1.08998 * 109.47048 * 186.45708 * 17 15 14 38 38 H 1.09004 * 109.46680 * 306.45314 * 17 15 14 39 39 H 0.97004 * 120.00084 * 0.02562 * 18 17 15 40 40 H 0.96994 * 120.00302 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0138 -2.2162 -0.7724 6 6 1.9471 -3.2835 -1.5927 7 8 2.0280 -3.1311 -2.7967 8 6 1.7761 -4.6341 -1.0312 9 6 1.7740 -5.0052 0.3880 10 6 1.5942 -6.3372 0.4302 11 7 1.4809 -6.8077 -0.8455 12 1 1.3446 -7.7383 -1.0830 13 6 1.5854 -5.7957 -1.7276 14 6 2.0284 -2.2644 0.6969 15 6 2.0861 -0.8074 1.2025 16 1 3.1133 -0.5155 1.4211 17 6 1.1965 -0.6263 2.4341 18 7 1.7453 -1.3993 3.5509 19 6 1.1136 -1.3900 4.7659 20 1 0.2106 -0.8130 4.9007 21 6 1.6339 -2.1221 5.8244 22 7 2.7346 -2.8248 5.6603 23 14 0.7726 -2.1088 7.4818 24 1 -0.2209 -3.2113 7.5322 25 1 1.7746 -2.2956 8.5619 26 1 0.0794 -0.8089 7.6691 27 1 -0.3633 0.4524 0.9228 28 1 -0.3633 0.5729 -0.8531 29 1 -0.3634 -1.0253 -0.0695 30 1 3.1253 -0.5272 -1.3985 31 1 1.4764 -0.6457 -2.0857 32 1 1.8964 -4.3412 1.2309 33 1 1.5469 -6.9366 1.3275 34 1 1.5314 -5.8864 -2.8025 35 1 1.1218 -2.7475 1.0610 36 1 2.9063 -2.8112 1.0412 37 1 1.1615 0.4290 2.7050 38 1 0.1893 -0.9773 2.2095 39 1 2.5565 -1.9172 3.4300 40 1 3.0980 -3.3367 6.3997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724585120.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:16 Heat of formation + Delta-G solvation = 5.729354 kcal Electronic energy + Delta-G solvation = -21822.985046 eV Core-core repulsion = 18637.907899 eV Total energy + Delta-G solvation = -3185.077147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10654 -40.85020 -38.90661 -36.32400 -34.20844 -33.05498 -31.75545 -30.39360 -30.04904 -27.86678 -26.98795 -25.07302 -23.84167 -22.16196 -21.63839 -20.50153 -20.00875 -19.11310 -18.93132 -17.54679 -17.06042 -16.64239 -16.12666 -15.68359 -15.36699 -15.28053 -14.93536 -14.58017 -14.45247 -14.33041 -14.10072 -13.84091 -13.53720 -13.17614 -13.10951 -12.97884 -12.79421 -12.73879 -12.52683 -12.12514 -11.84775 -11.57038 -11.47855 -11.39478 -11.00062 -10.84027 -9.84335 -9.63289 -9.23502 -8.91692 -7.88556 -5.16233 0.77255 1.51901 1.52315 1.53554 1.60692 2.04918 2.47794 2.53670 2.60869 3.42623 3.46148 3.57763 3.85981 4.01144 4.12659 4.20901 4.29998 4.37236 4.41977 4.51902 4.56852 4.65839 4.71703 4.83216 4.90062 4.97306 4.99342 5.05184 5.08492 5.14509 5.25255 5.33809 5.39125 5.54298 5.57379 5.74909 5.97756 6.33580 6.54840 6.69719 7.23534 7.40787 8.16213 8.40024 9.34698 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015310 B = 0.005459 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.440846 B = 5127.533084 C = 6594.352540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.116 0.884 4 C 0.109 3.891 5 N -0.611 5.611 6 C 0.598 3.402 7 O -0.596 6.596 8 C -0.271 4.271 9 C -0.200 4.200 10 C -0.009 4.009 11 N -0.532 5.532 12 H 0.438 0.562 13 C 0.084 3.916 14 C 0.124 3.876 15 C -0.098 4.098 16 H 0.084 0.916 17 C 0.166 3.834 18 N -0.743 5.743 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.071 4.071 22 N -0.966 5.966 23 Si 0.967 3.033 24 H -0.288 1.288 25 H -0.298 1.298 26 H -0.271 1.271 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.375 0.625 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -3.583 -14.187 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.134 0.866 4 C -0.013 4.013 5 N -0.342 5.342 6 C 0.392 3.608 7 O -0.480 6.480 8 C -0.281 4.281 9 C -0.224 4.224 10 C -0.137 4.137 11 N -0.128 5.128 12 H 0.278 0.722 13 C -0.055 4.055 14 C 0.001 3.999 15 C -0.118 4.118 16 H 0.102 0.898 17 C 0.040 3.960 18 N -0.386 5.386 19 C -0.372 4.372 20 H 0.092 0.908 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.797 3.203 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.196 1.196 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.211 0.789 34 H 0.213 0.787 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.207 0.793 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.343 -3.646 -14.724 15.533 hybrid contribution 0.081 -0.671 1.138 1.324 sum -3.262 -4.317 -13.586 14.624 Atomic orbital electron populations 1.21743 0.93872 1.01336 1.02690 1.22383 0.96707 0.99636 0.91718 0.86620 1.22448 1.01336 0.79499 0.97988 1.48305 1.72206 1.06557 1.07179 1.17391 0.75052 0.83792 0.84604 1.90689 1.54930 1.86886 1.15513 1.20402 1.20379 0.92865 0.94493 1.22723 1.08256 0.96217 0.95183 1.22200 1.08063 0.94987 0.88464 1.41620 1.55419 1.10511 1.05298 0.72191 1.22023 1.00843 0.86037 0.96581 1.22157 1.01175 0.97805 0.78730 1.22407 1.00535 0.93928 0.94891 0.89762 1.20811 0.95028 0.94471 0.85688 1.42556 1.30671 1.57201 1.08153 1.19590 1.05883 1.22753 0.89003 0.90793 1.25451 0.98756 1.00662 1.01471 1.69799 1.23676 1.36058 1.32179 0.85235 0.77213 0.77882 0.79999 1.21549 1.22448 1.19648 0.91595 0.90908 0.94341 0.90811 0.90454 0.84175 0.78873 0.78722 0.91665 0.92295 0.95416 0.95436 0.79334 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.15 71.98 0.59 -2.74 16 2 C -0.09 -2.06 3.54 -9.33 -0.03 -2.09 16 3 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 4 C 0.11 2.91 6.37 86.93 0.55 3.47 16 5 N -0.61 -19.49 3.31 -815.41 -2.70 -22.19 16 6 C 0.60 20.89 7.83 86.62 0.68 21.57 16 7 O -0.60 -23.27 17.21 -4.14 -0.07 -23.34 16 8 C -0.27 -8.37 6.22 -19.04 -0.12 -8.49 16 9 C -0.20 -6.05 9.40 23.62 0.22 -5.83 16 10 C -0.01 -0.20 11.89 83.12 0.99 0.79 16 11 N -0.53 -9.28 5.90 -194.56 -1.15 -10.43 16 12 H 0.44 3.76 8.96 -92.70 -0.83 2.93 16 13 C 0.08 1.93 11.70 83.91 0.98 2.91 16 14 C 0.12 4.06 3.96 86.73 0.34 4.40 16 15 C -0.10 -3.02 2.87 -9.60 -0.03 -3.05 16 16 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 17 C 0.17 6.22 4.52 86.38 0.39 6.61 16 18 N -0.74 -35.92 5.45 -343.44 -1.87 -37.79 16 19 C -0.24 -12.97 9.99 84.04 0.84 -12.13 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 23 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 H 0.07 1.59 6.76 -2.38 -0.02 1.57 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.04 1.06 7.91 -2.39 -0.02 1.04 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.05 8.00 -2.39 -0.02 2.03 16 32 H 0.14 4.79 4.83 -2.91 -0.01 4.77 16 33 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.20 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.07 2.34 6.36 -2.39 -0.02 2.33 16 36 H 0.06 2.06 7.13 -2.39 -0.02 2.05 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.03 1.05 6.67 -2.38 -0.02 1.03 16 39 H 0.37 19.26 7.52 -92.71 -0.70 18.56 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.08 324.84 1.93 -69.15 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.46 Total: 32.62 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.87 Total: 1.94 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.43 Total: -127.47 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -71.08 1.93 -69.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724585120.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.879 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds