Wall clock time and date at job start Mon Mar 30 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47324 * 2 1 4 4 C 1.53002 * 109.46857 * 119.99713 * 2 1 3 5 5 C 1.53001 * 109.46907 * 184.99756 * 4 2 1 6 6 C 1.53002 * 109.46907 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47064 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00028 * 179.97438 * 7 6 5 9 9 H 1.08004 * 120.00226 * 0.02562 * 8 7 6 10 10 C 1.38814 * 120.00158 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00000 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00267 * 180.02562 * 10 8 7 13 13 H 1.48509 * 109.46961 * 89.99902 * 12 10 8 14 14 H 1.48490 * 109.47301 * 209.99707 * 12 10 8 15 15 H 1.48498 * 109.47197 * 330.00347 * 12 10 8 16 16 N 1.46498 * 109.46838 * 239.99711 * 2 1 3 17 17 C 1.34776 * 119.99649 * 85.00802 * 16 2 1 18 18 O 1.21514 * 120.00572 * 359.97438 * 17 16 2 19 19 C 1.48169 * 119.99642 * 179.97438 * 17 16 2 20 20 C 1.39313 * 119.72181 * 180.02562 * 19 17 16 21 21 C 1.38589 * 119.05712 * 179.76487 * 20 19 17 22 22 C 1.38621 * 118.49157 * 0.47358 * 21 20 19 23 23 C 1.38563 * 119.34902 * 359.48085 * 22 21 20 24 24 N 1.31523 * 120.90497 * 0.30017 * 23 22 21 25 25 H 1.09001 * 109.47493 * 300.00447 * 1 2 3 26 26 H 1.09003 * 109.46938 * 59.99909 * 1 2 3 27 27 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47190 * 305.00187 * 4 2 1 29 29 H 1.08998 * 109.46787 * 64.99900 * 4 2 1 30 30 H 1.08992 * 109.47024 * 300.00186 * 5 4 2 31 31 H 1.08993 * 109.46832 * 60.00335 * 5 4 2 32 32 H 1.08994 * 109.47658 * 300.00683 * 6 5 4 33 33 H 1.09010 * 109.46872 * 60.00559 * 6 5 4 34 34 H 0.96998 * 119.99882 * 0.02562 * 7 6 5 35 35 H 0.97001 * 120.00125 * 180.02562 * 11 10 8 36 36 H 0.96997 * 120.00391 * 264.99818 * 16 2 1 37 37 H 1.07997 * 120.46989 * 359.97438 * 20 19 17 38 38 H 1.08007 * 120.75458 * 180.25504 * 21 20 19 39 39 H 1.08002 * 120.32911 * 179.75965 * 22 21 20 40 40 H 1.07997 * 119.54794 * 180.27857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0747 -1.3340 2.5634 7 7 5.5347 -1.2312 2.6248 8 6 6.2184 -1.8046 3.6635 9 1 5.6812 -2.3329 4.4373 10 6 7.6018 -1.7067 3.7220 11 7 8.2564 -1.0624 2.7793 12 14 8.5345 -2.4895 5.1386 13 1 8.8966 -3.8849 4.7818 14 1 9.7700 -1.7111 5.4080 15 1 7.6784 -2.4951 6.3519 16 7 2.0183 -0.6907 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8578 1.1607 -2.4118 19 6 2.6414 -0.7167 -3.5667 20 6 2.7729 -0.0160 -4.7636 21 6 3.2412 -0.6816 -5.8853 22 6 3.5525 -2.0278 -5.7735 23 6 3.3981 -2.6613 -4.5509 24 7 2.9558 -2.0044 -3.5008 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6053 -0.2617 2.1369 29 1 1.7515 -1.7714 1.2056 30 1 3.9993 -1.0728 0.4261 31 1 3.8531 0.4369 1.3574 32 1 3.6400 -0.8741 3.4508 33 1 3.7863 -2.3843 2.5201 34 1 6.0171 -0.7563 1.9300 35 1 9.2232 -0.9944 2.8199 36 1 2.2490 -1.6318 -1.1526 37 1 2.5167 1.0319 -4.8157 38 1 3.3577 -0.1641 -6.8262 39 1 3.9161 -2.5764 -6.6298 40 1 3.6439 -3.7089 -4.4590 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725370741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:20 Heat of formation + Delta-G solvation = -3.927671 kcal Electronic energy + Delta-G solvation = -20590.401383 eV Core-core repulsion = 17404.905476 eV Total energy + Delta-G solvation = -3185.495907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.77813 -39.22552 -36.72421 -34.81078 -33.16366 -32.35555 -31.76148 -30.73172 -29.31140 -25.70887 -24.94171 -23.75687 -22.95014 -21.40631 -20.74964 -20.50134 -18.30226 -17.03207 -16.97237 -16.27916 -15.91163 -15.29177 -15.10415 -14.61608 -14.42772 -14.05748 -13.91207 -13.60215 -13.46511 -13.37227 -12.95422 -12.62659 -12.28302 -12.13661 -12.04816 -11.27029 -11.12347 -10.82619 -10.75676 -10.46516 -10.39032 -10.29050 -10.26969 -9.97098 -9.73389 -9.64216 -9.49513 -9.04294 -8.82098 -6.86545 -5.71641 -3.00130 0.41212 0.93041 2.63424 3.03395 3.46401 3.51020 3.53229 3.67619 3.94456 4.51197 4.55065 4.61635 4.69670 4.77275 4.81259 5.07782 5.14998 5.21395 5.43212 5.47672 5.60794 5.62442 5.67266 5.67668 5.79005 5.84895 6.00921 6.10780 6.18157 6.26731 6.27745 6.41498 6.47519 6.51810 6.93211 6.96502 7.33618 7.62601 7.73897 8.13891 8.47463 9.58096 10.17887 10.52250 11.51463 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016425 B = 0.003541 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.357098 B = 7904.474757 C = 9092.113421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.699 5.699 17 C 0.571 3.429 18 O -0.537 6.537 19 C 0.080 3.920 20 C -0.114 4.114 21 C -0.083 4.083 22 C -0.152 4.152 23 C 0.099 3.901 24 N -0.457 5.457 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.412 0.588 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -1.041 -17.553 23.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.350 5.350 17 C 0.356 3.644 18 O -0.414 6.414 19 C -0.058 4.058 20 C -0.134 4.134 21 C -0.109 4.109 22 C -0.172 4.172 23 C -0.060 4.060 24 N -0.168 5.168 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.248 0.752 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -15.680 -0.684 -16.566 22.820 hybrid contribution 1.089 -0.380 -0.339 1.202 sum -14.591 -1.064 -16.905 22.356 Atomic orbital electron populations 1.22172 0.95289 1.02110 1.02433 1.21128 0.93734 0.97849 0.83837 0.89178 1.21846 0.96926 1.00869 0.96428 1.21738 0.93651 1.01421 0.99633 1.20644 0.86144 0.96472 0.94163 1.42386 1.00241 1.66255 1.28980 1.19255 0.89471 1.27030 1.01223 0.91213 1.24750 0.96443 1.01282 0.98674 1.69669 1.07133 1.47057 1.34469 0.86182 0.79506 0.78638 0.81842 1.21744 1.21781 1.20768 1.45952 1.65258 1.14856 1.08914 1.17867 0.77785 0.85985 0.82786 1.90773 1.50787 1.15066 1.84784 1.21225 0.99609 0.90660 0.94303 1.22149 0.97104 1.02045 0.92141 1.21641 0.95844 0.94517 0.98881 1.22401 0.99626 0.95630 0.99591 1.22847 0.94840 1.00429 0.87894 1.67570 1.09158 1.07894 1.32201 0.91395 0.92347 0.92435 0.90166 0.91302 0.91947 0.91990 0.96507 0.96538 0.78347 0.93565 0.75192 0.83435 0.84078 0.84193 0.81892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 2 C 0.14 1.71 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.12 -1.54 4.75 -26.73 -0.13 -1.67 16 5 C -0.13 -2.12 5.22 -26.73 -0.14 -2.26 16 6 C 0.15 3.19 6.26 -4.04 -0.03 3.17 16 7 N -0.73 -19.55 5.60 -59.91 -0.34 -19.88 16 8 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 9 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 10 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 12 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 N -0.70 -9.00 4.52 -54.65 -0.25 -9.25 16 17 C 0.57 8.14 7.78 -12.18 -0.09 8.04 16 18 O -0.54 -8.89 15.99 5.35 0.09 -8.80 16 19 C 0.08 1.01 6.75 -83.01 -0.56 0.45 16 20 C -0.11 -1.19 9.63 -39.05 -0.38 -1.57 16 21 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 22 C -0.15 -1.09 10.11 -39.32 -0.40 -1.49 16 23 C 0.10 0.89 11.18 -17.56 -0.20 0.69 16 24 N -0.46 -5.41 9.54 -9.80 -0.09 -5.51 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 34 H 0.38 10.75 7.67 -40.82 -0.31 10.44 16 35 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.41 5.02 7.93 -40.82 -0.32 4.70 16 37 H 0.15 1.47 7.64 -52.49 -0.40 1.07 16 38 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -34.52 343.00 -8.14 -42.66 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.03 Total: 9.28 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.39 Total: -3.13 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.05 Total: -63.05 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.52 -8.14 -42.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725370741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.732 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds