Wall clock time and date at job start Mon Mar 30 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.64521 * 2 1 4 4 C 1.54327 * 110.71915 * 236.85388 * 2 1 3 5 5 N 1.47022 * 107.27181 * 263.65821 * 4 2 1 6 6 C 1.34777 * 125.64657 * 181.02610 * 5 4 2 7 7 O 1.21693 * 120.00018 * 180.02562 * 6 5 4 8 8 C 1.46682 * 119.99810 * 0.29119 * 6 5 4 9 9 C 1.37877 * 126.23207 * 179.41607 * 8 6 5 10 10 C 1.39834 * 107.08568 * 179.85067 * 9 8 6 11 11 C 1.35459 * 107.86458 * 0.41677 * 10 9 8 12 12 N 1.35536 * 108.87013 * 359.74242 * 11 10 9 13 13 H 0.97002 * 125.67627 * 180.02562 * 12 11 10 14 14 C 1.47423 * 108.70248 * 1.28158 * 5 4 2 15 15 C 1.55122 * 104.72398 * 335.55889 * 14 5 4 16 16 H 1.09005 * 111.19174 * 279.18735 * 15 14 5 17 17 C 1.53006 * 110.93983 * 155.28714 * 15 14 5 18 18 N 1.46502 * 109.46860 * 72.95480 * 17 15 14 19 19 C 1.36931 * 120.00144 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00501 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00353 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99796 * 23 21 19 25 25 H 1.48504 * 109.47258 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46867 * 299.99864 * 23 21 19 27 27 H 1.08996 * 109.46975 * 181.68962 * 1 2 3 28 28 H 1.09002 * 109.46886 * 301.68965 * 1 2 3 29 29 H 1.08999 * 109.46833 * 61.68919 * 1 2 3 30 30 H 1.08992 * 109.87977 * 144.23508 * 4 2 1 31 31 H 1.09008 * 109.88019 * 23.07363 * 4 2 1 32 32 H 1.08001 * 126.45339 * 359.96100 * 9 8 6 33 33 H 1.08000 * 126.06818 * 180.16331 * 10 9 8 34 34 H 1.07998 * 125.56255 * 179.76409 * 11 10 9 35 35 H 1.09004 * 110.36391 * 94.49045 * 14 5 4 36 36 H 1.08998 * 110.36593 * 216.80904 * 14 5 4 37 37 H 1.08996 * 109.46900 * 192.95133 * 17 15 14 38 38 H 1.09001 * 109.47135 * 312.96033 * 17 15 14 39 39 H 0.97000 * 120.00129 * 0.02562 * 18 17 15 40 40 H 0.96992 * 120.00853 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0760 -0.7893 -1.2086 5 7 2.3755 -2.1508 -0.7416 6 6 2.8901 -3.1437 -1.4937 7 8 3.0976 -4.2363 -0.9996 8 6 3.2055 -2.9057 -2.9063 9 6 3.7434 -3.8205 -3.7865 10 6 3.8747 -3.1754 -5.0202 11 6 3.4333 -1.9033 -4.8730 12 7 3.0239 -1.7267 -3.5930 13 1 2.6627 -0.9061 -3.2227 14 6 2.0140 -2.2517 0.6841 15 6 2.0828 -0.7949 1.2124 16 1 3.1097 -0.5044 1.4347 17 6 1.1874 -0.6155 2.4400 18 7 1.8007 -1.2795 3.5930 19 6 1.1755 -1.2528 4.8109 20 1 0.2304 -0.7420 4.9217 21 6 1.7568 -1.8814 5.9035 22 7 2.9088 -2.5036 5.7688 23 14 0.9035 -1.8456 7.5649 24 1 -0.4308 -2.4872 7.4500 25 1 1.7235 -2.5843 8.5585 26 1 0.7393 -0.4374 8.0067 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3633 0.5399 0.8745 29 1 -0.3633 0.4874 -0.9047 30 1 2.9851 -0.3163 -1.5800 31 1 1.3251 -0.8249 -1.9979 32 1 4.0111 -4.8432 -3.5653 33 1 4.2632 -3.6126 -5.9282 34 1 3.4108 -1.1524 -5.6489 35 1 1.0050 -2.6498 0.7922 36 1 2.7296 -2.8810 1.2133 37 1 1.0706 0.4471 2.6524 38 1 0.2100 -1.0566 2.2444 39 1 2.6497 -1.7380 3.4936 40 1 3.3153 -2.9425 6.5322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733541912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:58 Heat of formation + Delta-G solvation = 29.428342 kcal Electronic energy + Delta-G solvation = -21473.106935 eV Core-core repulsion = 18289.057453 eV Total energy + Delta-G solvation = -3184.049482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52117 -39.76493 -37.84190 -34.76790 -32.98608 -31.39802 -31.12268 -29.81390 -28.67346 -26.83785 -25.55349 -23.62543 -22.23034 -21.30785 -20.83530 -20.17804 -19.32739 -17.93522 -16.88845 -16.43368 -16.06526 -15.30101 -14.92670 -14.68086 -14.16890 -14.09138 -13.74983 -13.46889 -13.29982 -13.07862 -12.78460 -12.57834 -12.47252 -12.44791 -12.29971 -11.90023 -11.65895 -11.06894 -10.84207 -10.63268 -10.47892 -10.42164 -10.08183 -9.98970 -9.68803 -9.19037 -8.87765 -8.73962 -8.34549 -6.93669 -5.75815 -3.05663 1.38285 2.59328 2.82165 3.05269 3.37372 3.44481 3.48728 3.50227 4.30649 4.38971 4.57334 4.68072 4.72657 4.85911 5.06146 5.18674 5.20589 5.28114 5.34068 5.41255 5.58341 5.68411 5.74065 5.87620 5.90749 5.96606 5.98667 6.09528 6.13728 6.23978 6.32306 6.39213 6.57075 6.64671 6.77081 6.77932 7.16816 7.48041 7.68725 8.15189 8.42182 9.53310 10.09958 10.44069 11.46720 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.003688 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.163729 B = 7589.747755 C = 8259.587287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.091 0.909 4 C 0.093 3.907 5 N -0.618 5.618 6 C 0.598 3.402 7 O -0.525 6.525 8 C -0.047 4.047 9 C -0.111 4.111 10 C -0.212 4.212 11 C 0.013 3.987 12 N -0.544 5.544 13 H 0.417 0.583 14 C 0.118 3.882 15 C -0.101 4.101 16 H 0.087 0.913 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.024 0.976 38 H 0.026 0.974 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 6.311 -22.541 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.030 4.030 5 N -0.352 5.352 6 C 0.388 3.612 7 O -0.401 6.401 8 C -0.160 4.160 9 C -0.137 4.137 10 C -0.236 4.236 11 C -0.123 4.123 12 N -0.145 5.145 13 H 0.259 0.741 14 C -0.004 4.004 15 C -0.121 4.121 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.043 0.957 39 H 0.218 0.782 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.253 5.804 -22.058 22.843 hybrid contribution -0.264 0.333 0.936 1.028 sum -1.517 6.137 -21.121 22.047 Atomic orbital electron populations 1.21855 0.93762 1.02615 1.02030 1.22179 0.96824 0.99100 0.93293 0.89056 1.22306 0.99100 0.83402 0.98210 1.48467 1.63297 1.10966 1.12494 1.16740 0.77343 0.83521 0.83602 1.90875 1.53685 1.23242 1.72264 1.20481 1.14262 0.88025 0.93210 1.21341 1.01105 0.99292 0.91986 1.20901 1.09578 0.94314 0.98834 1.22053 1.04311 0.99302 0.86621 1.42721 1.49603 1.12254 1.09912 0.74105 1.22413 1.01529 0.97914 0.78502 1.22678 1.01278 0.93371 0.94767 0.89489 1.20625 0.94111 0.96001 0.85447 1.42373 1.25534 1.64665 1.05194 1.19146 1.03025 1.28754 0.86540 0.91232 1.24752 0.97256 1.00654 0.98147 1.69645 1.17924 1.39943 1.30431 0.86268 0.78550 0.77398 0.83945 1.21243 1.21669 1.21290 0.92176 0.91113 0.92893 0.91741 0.91587 0.83483 0.84001 0.81335 0.90862 0.89537 0.95859 0.95672 0.78226 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.91 37.16 0.29 -1.20 16 2 C -0.09 -1.02 3.46 -88.78 -0.31 -1.33 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.09 0.94 4.69 -3.06 -0.01 0.93 16 5 N -0.62 -8.85 3.32 -171.92 -0.57 -9.42 16 6 C 0.60 9.69 7.82 -12.85 -0.10 9.59 16 7 O -0.52 -10.59 17.14 5.20 0.09 -10.50 16 8 C -0.05 -0.61 6.89 -81.98 -0.56 -1.18 16 9 C -0.11 -1.38 10.65 -39.12 -0.42 -1.80 16 10 C -0.21 -2.03 10.81 -39.98 -0.43 -2.46 16 11 C 0.01 0.10 11.89 -16.91 -0.20 -0.10 16 12 N -0.54 -5.10 5.61 -9.39 -0.05 -5.16 16 13 H 0.42 2.96 4.92 -40.82 -0.20 2.76 16 14 C 0.12 1.95 6.01 -2.41 -0.01 1.93 16 15 C -0.10 -1.54 2.93 -88.35 -0.26 -1.80 16 16 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 17 C 0.17 3.13 4.55 -4.04 -0.02 3.11 16 18 N -0.73 -18.27 5.55 -59.91 -0.33 -18.60 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 28 H 0.07 0.77 7.13 -51.93 -0.37 0.40 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.54 7.08 -51.93 -0.37 0.17 16 31 H 0.07 0.54 6.94 -51.92 -0.36 0.18 16 32 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.07 1.25 7.48 -51.93 -0.39 0.86 16 36 H 0.09 1.68 8.03 -51.93 -0.42 1.26 16 37 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 38 H 0.03 0.48 6.95 -51.93 -0.36 0.12 16 39 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -34.10 325.02 -8.21 -42.31 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.66 Total: 8.39 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.28 Total: -1.66 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.23 Total: -60.88 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.10 -8.21 -42.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733541912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.738 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds