Wall clock time and date at job start Mon Mar 30 2020 02:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.64521 * 2 1 4 4 C 1.54327 * 110.71915 * 236.85388 * 2 1 3 5 5 N 1.47022 * 107.27181 * 263.65821 * 4 2 1 6 6 C 1.34777 * 125.64657 * 181.02610 * 5 4 2 7 7 O 1.21693 * 120.00018 * 180.02562 * 6 5 4 8 8 C 1.46682 * 119.99810 * 0.29119 * 6 5 4 9 9 C 1.37877 * 126.23207 * 179.41607 * 8 6 5 10 10 C 1.39834 * 107.08568 * 179.85067 * 9 8 6 11 11 C 1.35459 * 107.86458 * 0.41677 * 10 9 8 12 12 N 1.35536 * 108.87013 * 359.74242 * 11 10 9 13 13 H 0.97002 * 125.67627 * 180.02562 * 12 11 10 14 14 C 1.47423 * 108.70248 * 1.28158 * 5 4 2 15 15 C 1.55122 * 104.72398 * 335.55889 * 14 5 4 16 16 H 1.09005 * 111.19174 * 279.18735 * 15 14 5 17 17 C 1.53006 * 110.93983 * 155.28714 * 15 14 5 18 18 N 1.46502 * 109.46860 * 72.95480 * 17 15 14 19 19 C 1.36931 * 120.00144 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99960 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00501 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00353 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99796 * 23 21 19 25 25 H 1.48504 * 109.47258 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46867 * 299.99864 * 23 21 19 27 27 H 1.08996 * 109.46975 * 181.68962 * 1 2 3 28 28 H 1.09002 * 109.46886 * 301.68965 * 1 2 3 29 29 H 1.08999 * 109.46833 * 61.68919 * 1 2 3 30 30 H 1.08992 * 109.87977 * 144.23508 * 4 2 1 31 31 H 1.09008 * 109.88019 * 23.07363 * 4 2 1 32 32 H 1.08001 * 126.45339 * 359.96100 * 9 8 6 33 33 H 1.08000 * 126.06818 * 180.16331 * 10 9 8 34 34 H 1.07998 * 125.56255 * 179.76409 * 11 10 9 35 35 H 1.09004 * 110.36391 * 94.49045 * 14 5 4 36 36 H 1.08998 * 110.36593 * 216.80904 * 14 5 4 37 37 H 1.08996 * 109.46900 * 192.95133 * 17 15 14 38 38 H 1.09001 * 109.47135 * 312.96033 * 17 15 14 39 39 H 0.97000 * 120.00129 * 0.02562 * 18 17 15 40 40 H 0.96992 * 120.00853 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0760 -0.7893 -1.2086 5 7 2.3755 -2.1508 -0.7416 6 6 2.8901 -3.1437 -1.4937 7 8 3.0976 -4.2363 -0.9996 8 6 3.2055 -2.9057 -2.9063 9 6 3.7434 -3.8205 -3.7865 10 6 3.8747 -3.1754 -5.0202 11 6 3.4333 -1.9033 -4.8730 12 7 3.0239 -1.7267 -3.5930 13 1 2.6627 -0.9061 -3.2227 14 6 2.0140 -2.2517 0.6841 15 6 2.0828 -0.7949 1.2124 16 1 3.1097 -0.5044 1.4347 17 6 1.1874 -0.6155 2.4400 18 7 1.8007 -1.2795 3.5930 19 6 1.1755 -1.2528 4.8109 20 1 0.2304 -0.7420 4.9217 21 6 1.7568 -1.8814 5.9035 22 7 2.9088 -2.5036 5.7688 23 14 0.9035 -1.8456 7.5649 24 1 -0.4308 -2.4872 7.4500 25 1 1.7235 -2.5843 8.5585 26 1 0.7393 -0.4374 8.0067 27 1 -0.3633 -1.0272 0.0303 28 1 -0.3633 0.5399 0.8745 29 1 -0.3633 0.4874 -0.9047 30 1 2.9851 -0.3163 -1.5800 31 1 1.3251 -0.8249 -1.9979 32 1 4.0111 -4.8432 -3.5653 33 1 4.2632 -3.6126 -5.9282 34 1 3.4108 -1.1524 -5.6489 35 1 1.0050 -2.6498 0.7922 36 1 2.7296 -2.8810 1.2133 37 1 1.0706 0.4471 2.6524 38 1 0.2100 -1.0566 2.2444 39 1 2.6497 -1.7380 3.4936 40 1 3.3153 -2.9425 6.5322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733541912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:58 Heat of formation + Delta-G solvation = 5.338766 kcal Electronic energy + Delta-G solvation = -21474.151537 eV Core-core repulsion = 18289.057453 eV Total energy + Delta-G solvation = -3185.094084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40580 -40.83939 -39.10468 -36.52208 -34.41470 -32.88849 -32.15716 -30.96264 -29.91335 -27.74888 -27.14431 -25.19936 -23.68724 -22.33362 -21.69428 -21.03975 -20.56841 -19.34013 -18.53709 -17.48381 -17.29375 -16.68440 -16.37708 -15.79982 -15.44101 -15.35337 -14.97262 -14.71488 -14.62272 -14.28444 -14.08250 -13.72221 -13.54624 -13.46730 -13.20428 -13.11914 -13.00147 -12.77344 -12.66960 -12.23265 -11.91333 -11.72133 -11.61059 -11.51192 -11.28230 -10.92026 -10.04035 -9.86378 -9.18260 -9.01101 -7.95463 -5.25127 0.41373 1.46010 1.49702 1.55785 1.74726 1.82804 2.25286 2.29376 2.55355 3.27125 3.37921 3.41212 3.70728 3.77567 4.02362 4.12575 4.21905 4.33697 4.34434 4.41446 4.47921 4.52572 4.55634 4.70949 4.77953 4.81417 4.97662 5.01289 5.11184 5.15806 5.20242 5.29054 5.29325 5.46864 5.48809 5.75208 5.92239 6.25921 6.35782 6.54640 6.95452 7.31811 8.08235 8.29455 9.28081 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031554 B = 0.003688 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.163729 B = 7589.747755 C = 8259.587287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.123 0.877 4 C 0.089 3.911 5 N -0.616 5.616 6 C 0.590 3.410 7 O -0.587 6.587 8 C -0.080 4.080 9 C -0.126 4.126 10 C -0.227 4.227 11 C 0.048 3.952 12 N -0.532 5.532 13 H 0.429 0.571 14 C 0.122 3.878 15 C -0.094 4.094 16 H 0.077 0.923 17 C 0.167 3.833 18 N -0.750 5.750 19 C -0.245 4.245 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.274 1.274 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.221 0.779 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.371 0.629 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 9.530 -25.434 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.100 4.100 3 H 0.141 0.859 4 C -0.032 4.032 5 N -0.349 5.349 6 C 0.382 3.618 7 O -0.468 6.468 8 C -0.193 4.193 9 C -0.154 4.154 10 C -0.250 4.250 11 C -0.089 4.089 12 N -0.133 5.133 13 H 0.274 0.726 14 C -0.001 4.001 15 C -0.114 4.114 16 H 0.096 0.904 17 C 0.041 3.959 18 N -0.392 5.392 19 C -0.377 4.377 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.204 1.204 25 H -0.224 1.224 26 H -0.199 1.199 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.182 0.818 34 H 0.237 0.763 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.202 0.798 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.457 9.110 -24.984 26.706 hybrid contribution 0.073 -0.633 1.684 1.800 sum -2.384 8.477 -23.300 24.908 Atomic orbital electron populations 1.21874 0.93088 1.01750 1.03544 1.22214 0.97264 0.99915 0.90571 0.85879 1.22635 1.01279 0.80705 0.98599 1.48481 1.62558 1.12595 1.11241 1.17289 0.76627 0.82937 0.84958 1.90823 1.56472 1.25720 1.73742 1.19971 1.17352 0.90188 0.91773 1.21530 1.01146 0.99055 0.93672 1.21230 1.10305 0.95081 0.98369 1.22864 1.00236 0.99446 0.86379 1.42664 1.49105 1.11411 1.10123 0.72644 1.22138 0.99477 0.98292 0.80184 1.22505 1.00352 0.93264 0.95253 0.90444 1.20786 0.94486 0.95724 0.84940 1.42654 1.25196 1.65058 1.06300 1.19625 1.03074 1.27398 0.87613 0.90208 1.25623 0.98197 1.01216 1.02021 1.69827 1.19783 1.41655 1.31036 0.85187 0.77400 0.77747 0.79281 1.20419 1.22442 1.19948 0.94102 0.91772 0.89397 0.89057 0.88561 0.85076 0.81770 0.76297 0.92060 0.93949 0.94588 0.95401 0.79818 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.91 71.98 0.57 -1.96 16 2 C -0.08 -1.49 3.46 -9.60 -0.03 -1.52 16 3 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.09 1.52 4.69 86.73 0.41 1.93 16 5 N -0.62 -17.84 3.32 -816.05 -2.71 -20.55 16 6 C 0.59 19.97 7.82 86.45 0.68 20.65 16 7 O -0.59 -25.90 17.14 -4.33 -0.07 -25.97 16 8 C -0.08 -2.06 6.89 40.35 0.28 -1.78 16 9 C -0.13 -3.14 10.65 22.57 0.24 -2.90 16 10 C -0.23 -3.68 10.81 22.01 0.24 -3.45 16 11 C 0.05 0.53 11.89 83.48 0.99 1.52 16 12 N -0.53 -8.01 5.61 -183.61 -1.03 -9.04 16 13 H 0.43 4.01 4.92 -92.71 -0.46 3.55 16 14 C 0.12 4.28 6.01 86.93 0.52 4.80 16 15 C -0.09 -2.85 2.93 -9.33 -0.03 -2.88 16 16 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 17 C 0.17 6.29 4.55 86.38 0.39 6.68 16 18 N -0.75 -38.44 5.55 -343.45 -1.91 -40.34 16 19 C -0.25 -13.82 9.99 84.03 0.84 -12.98 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 22 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 23 Si 0.98 46.87 29.55 68.60 2.03 48.90 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 26 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 27 H 0.04 0.87 7.35 -2.39 -0.02 0.85 16 28 H 0.06 1.22 7.13 -2.39 -0.02 1.20 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.13 7.08 -2.39 -0.02 1.11 16 31 H 0.10 1.13 6.94 -2.38 -0.02 1.11 16 32 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.06 2.25 7.48 -2.39 -0.02 2.23 16 36 H 0.04 1.83 8.03 -2.39 -0.02 1.81 16 37 H 0.04 1.30 8.05 -2.39 -0.02 1.28 16 38 H 0.03 1.06 6.95 -2.39 -0.02 1.04 16 39 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 40 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -80.44 325.02 2.04 -78.40 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: -0.11 Total: 25.87 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 5.56 Total: 3.98 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.37 Total: -131.17 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.07 Total: -25.97 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -80.44 2.04 -78.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733541912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.737 kcal (2) G-P(sol) polarization free energy of solvation -80.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds