Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21693 * 119.99808 * 180.02562 * 6 5 4 8 8 C 1.46676 * 120.00077 * 0.02562 * 6 5 4 9 9 C 1.37865 * 126.23371 * 179.69385 * 8 6 5 10 10 C 1.39842 * 107.08700 * 179.84728 * 9 8 6 11 11 C 1.35452 * 107.86170 * 0.41139 * 10 9 8 12 12 N 1.35536 * 108.87356 * 359.74348 * 11 10 9 13 13 H 0.96998 * 125.67713 * 179.97438 * 12 11 10 14 14 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 15 15 C 1.54907 * 104.83364 * 24.12527 * 14 5 4 16 16 H 1.09006 * 111.00095 * 81.06690 * 15 14 5 17 17 C 1.53003 * 111.00736 * 204.91764 * 15 14 5 18 18 N 1.46499 * 109.47113 * 287.19974 * 17 15 14 19 19 C 1.36937 * 119.99908 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99770 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47565 * 89.99990 * 23 21 19 25 25 H 1.48504 * 109.47213 * 209.99872 * 23 21 19 26 26 H 1.48503 * 109.47367 * 329.99775 * 23 21 19 27 27 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 28 28 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 29 29 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 30 30 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 31 31 H 1.08996 * 109.88907 * 336.60101 * 4 2 1 32 32 H 1.08003 * 126.45912 * 359.95915 * 9 8 6 33 33 H 1.07994 * 126.07040 * 180.18031 * 10 9 8 34 34 H 1.08005 * 125.56129 * 179.70789 * 11 10 9 35 35 H 1.08996 * 110.37128 * 142.96688 * 14 5 4 36 36 H 1.09006 * 110.36684 * 265.17859 * 14 5 4 37 37 H 1.09001 * 109.47012 * 47.19563 * 17 15 14 38 38 H 1.08997 * 109.47140 * 167.19819 * 17 15 14 39 39 H 0.96999 * 120.00147 * 359.97438 * 18 17 15 40 40 H 0.96995 * 119.99823 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0911 -4.2383 1.0011 8 6 3.1994 -2.9078 2.9078 9 6 3.7212 -3.8276 3.7923 10 6 3.8631 -3.1793 5.0232 11 6 3.4265 -1.9057 4.8747 12 7 3.0205 -1.7279 3.5939 13 1 2.6630 -0.9061 3.2226 14 6 2.0126 -2.2521 -0.6838 15 6 2.0789 -0.7975 -1.2125 16 1 3.1061 -0.5098 -1.4367 17 6 1.1814 -0.6182 -2.4386 18 7 1.7912 -1.2848 -3.5918 19 6 1.1636 -1.2585 -4.8086 20 1 0.2193 -0.7460 -4.9182 21 6 1.7416 -1.8897 -5.9015 22 7 2.8932 -2.5130 -5.7683 23 14 0.8858 -1.8533 -7.5614 24 1 1.3370 -0.6623 -8.3251 25 1 1.2238 -3.0846 -8.3197 26 1 -0.5838 -1.7841 -7.3594 27 1 -0.3633 0.4873 0.9048 28 1 -0.3633 0.5398 -0.8744 29 1 -0.3633 -1.0272 -0.0303 30 1 2.9869 -0.3181 1.5780 31 1 1.3274 -0.8199 2.0002 32 1 3.9745 -4.8548 3.5751 33 1 4.2485 -3.6174 5.9319 34 1 3.4048 -1.1546 5.6506 35 1 2.7293 -2.8808 -1.2121 36 1 1.0046 -2.6520 -0.7941 37 1 0.2036 -1.0571 -2.2404 38 1 1.0662 0.4444 -2.6521 39 1 2.6395 -1.7447 -3.4935 40 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733541914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = 29.305632 kcal Electronic energy + Delta-G solvation = -21474.397251 eV Core-core repulsion = 18290.342448 eV Total energy + Delta-G solvation = -3184.054803 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52262 -39.77076 -37.84610 -34.77048 -32.98837 -31.40068 -31.12384 -29.81798 -28.67939 -26.83917 -25.55424 -23.62571 -22.23430 -21.30871 -20.83787 -20.17890 -19.32829 -17.93931 -16.89209 -16.43141 -16.07043 -15.30227 -14.92880 -14.67856 -14.17151 -14.09015 -13.74753 -13.47337 -13.29794 -13.08590 -12.78627 -12.57459 -12.47045 -12.44799 -12.30181 -11.90359 -11.66041 -11.07217 -10.85930 -10.62233 -10.48859 -10.41667 -10.06728 -9.98283 -9.69344 -9.19072 -8.88355 -8.73993 -8.34646 -6.93765 -5.76200 -3.05936 1.38228 2.59267 2.82087 3.05166 3.37287 3.43865 3.48746 3.51016 4.30614 4.39006 4.57077 4.67919 4.72627 4.85854 5.06287 5.18636 5.20240 5.28226 5.34346 5.41336 5.58231 5.68320 5.73802 5.87558 5.90673 5.96607 5.98624 6.09451 6.13870 6.24050 6.32178 6.39153 6.57041 6.64547 6.77004 6.77786 7.16773 7.47954 7.69095 8.15099 8.41836 9.53083 10.09710 10.43780 11.46418 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031596 B = 0.003688 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.975601 B = 7590.463757 C = 8259.563501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.091 0.909 4 C 0.094 3.906 5 N -0.618 5.618 6 C 0.598 3.402 7 O -0.525 6.525 8 C -0.047 4.047 9 C -0.111 4.111 10 C -0.212 4.212 11 C 0.013 3.987 12 N -0.544 5.544 13 H 0.417 0.583 14 C 0.118 3.882 15 C -0.101 4.101 16 H 0.086 0.914 17 C 0.166 3.834 18 N -0.733 5.733 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.024 0.976 39 H 0.384 0.616 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 6.332 22.568 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.110 0.890 4 C -0.030 4.030 5 N -0.352 5.352 6 C 0.388 3.612 7 O -0.401 6.401 8 C -0.160 4.160 9 C -0.137 4.137 10 C -0.236 4.236 11 C -0.123 4.123 12 N -0.145 5.145 13 H 0.259 0.741 14 C -0.004 4.004 15 C -0.121 4.121 16 H 0.105 0.895 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.187 0.813 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.218 0.782 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.266 5.822 22.091 22.881 hybrid contribution -0.244 0.335 -0.942 1.029 sum -1.510 6.157 21.150 22.079 Atomic orbital electron populations 1.21859 0.93770 1.02622 1.02026 1.22178 0.96840 0.99085 0.93274 0.89031 1.22298 0.99135 0.83369 0.98215 1.48463 1.63330 1.10927 1.12484 1.16739 0.77317 0.83534 0.83614 1.90875 1.53699 1.23186 1.72299 1.20476 1.14474 0.87869 0.93151 1.21340 1.01234 0.99189 0.91960 1.20901 1.09593 0.94229 0.98907 1.22052 1.04292 0.99319 0.86617 1.42721 1.49734 1.12210 1.09834 0.74105 1.22366 1.01584 0.97917 0.78494 1.22637 1.01293 0.93382 0.94788 0.89520 1.20625 0.94115 0.95988 0.85444 1.42383 1.25646 1.64473 1.05282 1.19191 1.03069 1.28541 0.86576 0.91176 1.24755 0.97289 1.00655 0.98156 1.69659 1.18065 1.39883 1.30308 0.86193 0.78711 0.77009 0.84269 1.21740 1.21743 1.20757 0.92904 0.91109 0.92170 0.91772 0.91577 0.83482 0.84000 0.81335 0.89553 0.90870 0.95659 0.95850 0.78228 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 7.91 37.16 0.29 -1.20 16 2 C -0.09 -1.02 3.47 -88.78 -0.31 -1.32 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.09 0.94 4.69 -3.06 -0.01 0.93 16 5 N -0.62 -8.85 3.33 -172.06 -0.57 -9.42 16 6 C 0.60 9.69 7.82 -12.85 -0.10 9.59 16 7 O -0.52 -10.59 17.14 5.20 0.09 -10.50 16 8 C -0.05 -0.61 6.89 -81.98 -0.56 -1.18 16 9 C -0.11 -1.38 10.65 -39.12 -0.42 -1.80 16 10 C -0.21 -2.03 10.81 -39.98 -0.43 -2.46 16 11 C 0.01 0.10 11.89 -16.91 -0.20 -0.10 16 12 N -0.54 -5.10 5.61 -9.39 -0.05 -5.15 16 13 H 0.42 2.96 4.92 -40.82 -0.20 2.76 16 14 C 0.12 1.95 6.00 -2.53 -0.02 1.93 16 15 C -0.10 -1.54 2.91 -88.47 -0.26 -1.80 16 16 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.17 3.13 4.54 -4.04 -0.02 3.11 16 18 N -0.73 -18.26 5.55 -59.91 -0.33 -18.60 16 19 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 23 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 29 H 0.06 0.70 7.35 -51.93 -0.38 0.31 16 30 H 0.06 0.54 7.09 -51.93 -0.37 0.17 16 31 H 0.07 0.54 6.93 -51.93 -0.36 0.18 16 32 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.09 1.68 8.04 -51.93 -0.42 1.26 16 36 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 37 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 38 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 39 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -34.11 324.97 -8.21 -42.33 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.66 Total: 8.34 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.28 Total: -1.64 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -0.23 Total: -60.86 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.11 -8.21 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733541914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.631 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds