Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34780 * 125.64703 * 178.90388 * 5 4 2 7 7 O 1.21693 * 119.99808 * 180.02562 * 6 5 4 8 8 C 1.46676 * 120.00077 * 0.02562 * 6 5 4 9 9 C 1.37865 * 126.23371 * 179.69385 * 8 6 5 10 10 C 1.39842 * 107.08700 * 179.84728 * 9 8 6 11 11 C 1.35452 * 107.86170 * 0.41139 * 10 9 8 12 12 N 1.35536 * 108.87356 * 359.74348 * 11 10 9 13 13 H 0.96998 * 125.67713 * 179.97438 * 12 11 10 14 14 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 15 15 C 1.54907 * 104.83364 * 24.12527 * 14 5 4 16 16 H 1.09006 * 111.00095 * 81.06690 * 15 14 5 17 17 C 1.53003 * 111.00736 * 204.91764 * 15 14 5 18 18 N 1.46499 * 109.47113 * 287.19974 * 17 15 14 19 19 C 1.36937 * 119.99908 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00168 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99763 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00202 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99770 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47565 * 89.99990 * 23 21 19 25 25 H 1.48504 * 109.47213 * 209.99872 * 23 21 19 26 26 H 1.48503 * 109.47367 * 329.99775 * 23 21 19 27 27 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 28 28 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 29 29 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 30 30 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 31 31 H 1.08996 * 109.88907 * 336.60101 * 4 2 1 32 32 H 1.08003 * 126.45912 * 359.95915 * 9 8 6 33 33 H 1.07994 * 126.07040 * 180.18031 * 10 9 8 34 34 H 1.08005 * 125.56129 * 179.70789 * 11 10 9 35 35 H 1.08996 * 110.37128 * 142.96688 * 14 5 4 36 36 H 1.09006 * 110.36684 * 265.17859 * 14 5 4 37 37 H 1.09001 * 109.47012 * 47.19563 * 17 15 14 38 38 H 1.08997 * 109.47140 * 167.19819 * 17 15 14 39 39 H 0.96999 * 120.00147 * 359.97438 * 18 17 15 40 40 H 0.96995 * 119.99823 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8863 -3.1449 1.4946 7 8 3.0911 -4.2383 1.0011 8 6 3.1994 -2.9078 2.9078 9 6 3.7212 -3.8276 3.7923 10 6 3.8631 -3.1793 5.0232 11 6 3.4265 -1.9057 4.8747 12 7 3.0205 -1.7279 3.5939 13 1 2.6630 -0.9061 3.2226 14 6 2.0126 -2.2521 -0.6838 15 6 2.0789 -0.7975 -1.2125 16 1 3.1061 -0.5098 -1.4367 17 6 1.1814 -0.6182 -2.4386 18 7 1.7912 -1.2848 -3.5918 19 6 1.1636 -1.2585 -4.8086 20 1 0.2193 -0.7460 -4.9182 21 6 1.7416 -1.8897 -5.9015 22 7 2.8932 -2.5130 -5.7683 23 14 0.8858 -1.8533 -7.5614 24 1 1.3370 -0.6623 -8.3251 25 1 1.2238 -3.0846 -8.3197 26 1 -0.5838 -1.7841 -7.3594 27 1 -0.3633 0.4873 0.9048 28 1 -0.3633 0.5398 -0.8744 29 1 -0.3633 -1.0272 -0.0303 30 1 2.9869 -0.3181 1.5780 31 1 1.3274 -0.8199 2.0002 32 1 3.9745 -4.8548 3.5751 33 1 4.2485 -3.6174 5.9319 34 1 3.4048 -1.1546 5.6506 35 1 2.7293 -2.8808 -1.2121 36 1 1.0046 -2.6520 -0.7941 37 1 0.2036 -1.0571 -2.2404 38 1 1.0662 0.4444 -2.6521 39 1 2.6395 -1.7447 -3.4935 40 1 3.2969 -2.9543 -6.5319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733541914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = 5.198316 kcal Electronic energy + Delta-G solvation = -21475.442623 eV Core-core repulsion = 18290.342448 eV Total energy + Delta-G solvation = -3185.100175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40711 -40.84473 -39.10866 -36.52385 -34.41716 -32.88945 -32.15832 -30.96828 -29.91675 -27.75075 -27.14586 -25.19871 -23.69042 -22.33351 -21.69639 -21.04007 -20.56893 -19.34322 -18.54131 -17.48187 -17.29739 -16.68677 -16.37853 -15.79670 -15.43738 -15.36175 -14.97479 -14.71412 -14.62055 -14.28749 -14.07909 -13.72284 -13.54710 -13.46884 -13.20571 -13.12220 -13.00175 -12.81094 -12.66433 -12.18658 -11.91646 -11.72818 -11.60608 -11.51187 -11.28294 -10.93143 -10.04039 -9.86365 -9.18329 -9.01175 -7.95794 -5.25330 0.41347 1.46090 1.48405 1.56772 1.74677 1.82756 2.25354 2.29249 2.55134 3.27274 3.37893 3.41313 3.70551 3.77409 4.02228 4.12740 4.21998 4.33698 4.34445 4.41435 4.47868 4.52599 4.55664 4.71004 4.77884 4.81464 4.97695 5.01228 5.11183 5.15877 5.20249 5.29040 5.29323 5.46866 5.49062 5.75203 5.92215 6.25837 6.35732 6.54641 6.95396 7.31698 8.08041 8.29205 9.27981 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031596 B = 0.003688 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.975601 B = 7590.463757 C = 8259.563501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.124 0.876 4 C 0.089 3.911 5 N -0.616 5.616 6 C 0.590 3.410 7 O -0.587 6.587 8 C -0.080 4.080 9 C -0.126 4.126 10 C -0.227 4.227 11 C 0.048 3.952 12 N -0.532 5.532 13 H 0.429 0.571 14 C 0.122 3.878 15 C -0.094 4.094 16 H 0.077 0.923 17 C 0.167 3.833 18 N -0.750 5.750 19 C -0.244 4.244 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.267 1.267 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.165 0.835 34 H 0.221 0.779 35 H 0.042 0.958 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.037 0.963 39 H 0.371 0.629 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 9.552 25.477 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.142 0.858 4 C -0.032 4.032 5 N -0.349 5.349 6 C 0.382 3.618 7 O -0.468 6.468 8 C -0.193 4.193 9 C -0.154 4.154 10 C -0.250 4.250 11 C -0.089 4.089 12 N -0.133 5.133 13 H 0.274 0.726 14 C -0.001 4.001 15 C -0.114 4.114 16 H 0.095 0.905 17 C 0.041 3.959 18 N -0.392 5.392 19 C -0.375 4.375 20 H 0.098 0.902 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.192 1.192 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.149 0.851 33 H 0.182 0.818 34 H 0.237 0.763 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.202 0.798 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.474 9.130 25.034 26.762 hybrid contribution 0.096 -0.631 -1.694 1.810 sum -2.378 8.499 23.340 24.953 Atomic orbital electron populations 1.21878 0.93108 1.01746 1.03540 1.22214 0.97273 0.99903 0.90551 0.85839 1.22628 1.01324 0.80663 0.98614 1.48477 1.62586 1.12565 1.11227 1.17289 0.76599 0.82950 0.84972 1.90823 1.56488 1.25664 1.73776 1.19966 1.17588 0.90022 0.91699 1.21530 1.01278 0.98952 0.93637 1.21230 1.10311 0.94994 0.98454 1.22864 1.00215 0.99469 0.86374 1.42664 1.49231 1.11372 1.10047 0.72645 1.22090 0.99510 0.98299 0.80181 1.22464 1.00356 0.93280 0.95280 0.90475 1.20787 0.94500 0.95714 0.84929 1.42665 1.25301 1.64866 1.06390 1.19658 1.03095 1.27154 0.87636 0.90187 1.25624 0.98247 1.01232 1.02010 1.69837 1.19926 1.41594 1.30950 0.85116 0.78306 0.76522 0.79678 1.21156 1.22572 1.19185 0.89411 0.91766 0.94112 0.89087 0.88543 0.85072 0.81770 0.76296 0.93958 0.92098 0.95387 0.94564 0.79817 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 7.91 71.98 0.57 -1.96 16 2 C -0.08 -1.48 3.47 -9.60 -0.03 -1.52 16 3 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.09 1.52 4.69 86.73 0.41 1.93 16 5 N -0.62 -17.82 3.33 -816.50 -2.72 -20.54 16 6 C 0.59 19.97 7.82 86.45 0.68 20.64 16 7 O -0.59 -25.89 17.14 -4.33 -0.07 -25.96 16 8 C -0.08 -2.06 6.89 40.35 0.28 -1.78 16 9 C -0.13 -3.14 10.65 22.57 0.24 -2.90 16 10 C -0.23 -3.68 10.81 22.01 0.24 -3.44 16 11 C 0.05 0.53 11.89 83.48 0.99 1.52 16 12 N -0.53 -8.00 5.61 -183.62 -1.03 -9.03 16 13 H 0.43 4.00 4.92 -92.71 -0.46 3.55 16 14 C 0.12 4.28 6.00 86.86 0.52 4.80 16 15 C -0.09 -2.85 2.91 -9.40 -0.03 -2.88 16 16 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 17 C 0.17 6.28 4.54 86.38 0.39 6.68 16 18 N -0.75 -38.41 5.55 -343.45 -1.91 -40.31 16 19 C -0.24 -13.71 9.99 84.03 0.84 -12.87 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 22 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 23 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 24 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 25 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.22 7.12 -2.39 -0.02 1.20 16 29 H 0.04 0.87 7.35 -2.39 -0.02 0.85 16 30 H 0.09 1.12 7.09 -2.39 -0.02 1.11 16 31 H 0.10 1.13 6.93 -2.39 -0.02 1.11 16 32 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.22 0.22 8.06 -2.91 -0.02 0.19 16 35 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 36 H 0.06 2.24 7.49 -2.38 -0.02 2.22 16 37 H 0.03 1.06 6.94 -2.39 -0.02 1.04 16 38 H 0.04 1.30 8.05 -2.39 -0.02 1.29 16 39 H 0.37 20.72 7.67 -92.71 -0.71 20.01 16 40 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -80.47 324.97 2.03 -78.44 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.11 Total: 25.68 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.56 Total: 4.05 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.37 Total: -131.12 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.07 Total: -25.96 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -80.47 2.03 -78.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733541914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.634 kcal (2) G-P(sol) polarization free energy of solvation -80.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds