Wall clock time and date at job start Mon Mar 30 2020 02:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 C 1.52999 * 109.47304 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47174 * 179.97438 * 6 5 4 8 8 C 1.36928 * 120.00140 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00075 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00125 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00009 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47325 * 90.00402 * 12 10 8 14 14 H 1.48507 * 109.47248 * 210.00475 * 12 10 8 15 15 H 1.48498 * 109.47082 * 330.00120 * 12 10 8 16 16 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 17 17 C 1.34775 * 119.99693 * 275.00198 * 16 2 1 18 18 O 1.21512 * 120.00267 * 359.97438 * 17 16 2 19 19 C 1.48156 * 119.99792 * 179.97438 * 17 16 2 20 20 C 1.39822 * 120.92074 * 359.71441 * 19 17 16 21 21 C 1.38151 * 118.99903 * 179.80305 * 20 19 17 22 22 N 1.31808 * 120.89336 * 0.48264 * 21 20 19 23 23 C 1.31809 * 122.05533 * 359.74567 * 22 21 20 24 24 C 1.38149 * 120.89398 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08993 * 109.47092 * 300.00720 * 5 4 2 31 31 H 1.09007 * 109.46700 * 60.00493 * 5 4 2 32 32 H 1.09001 * 109.47622 * 300.00794 * 6 5 4 33 33 H 1.09007 * 109.46705 * 60.00661 * 6 5 4 34 34 H 0.97006 * 119.99928 * 0.02562 * 7 6 5 35 35 H 0.96999 * 120.00259 * 179.97438 * 11 10 8 36 36 H 0.97000 * 120.00117 * 94.99845 * 16 2 1 37 37 H 1.08002 * 120.49932 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.54893 * 180.23055 * 21 20 19 39 39 H 1.07996 * 119.55829 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.50518 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0749 -1.3352 -2.5626 7 7 5.5349 -1.2313 -2.6247 8 6 6.2186 -1.8055 -3.6629 9 1 5.6815 -2.3346 -4.4362 10 6 7.6020 -1.7075 -3.7214 11 7 8.2593 -2.2598 -4.7190 12 14 8.5309 -0.7917 -2.3843 13 1 8.8923 -1.7362 -1.2969 14 1 9.7667 -0.1996 -2.9567 15 1 7.6722 0.2889 -1.8364 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8584 1.1609 2.4116 19 6 2.6404 -0.7167 3.5670 20 6 2.9724 -2.0744 3.5276 21 6 3.4325 -2.6851 4.6782 22 7 3.5507 -2.0079 5.8028 23 6 3.2444 -0.7285 5.8846 24 6 2.7812 -0.0381 4.7812 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 3.8532 0.4368 -1.3573 31 1 3.9995 -1.0729 -0.4260 32 1 3.7865 -2.3855 -2.5185 33 1 3.6403 -0.8760 -3.4506 34 1 6.0172 -0.7558 -1.9303 35 1 9.2259 -2.1910 -4.7602 36 1 2.2491 -1.6318 1.1527 37 1 2.8733 -2.6366 2.6107 38 1 3.6950 -3.7324 4.6569 39 1 3.3563 -0.2130 6.8270 40 1 2.5318 1.0100 4.8554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734226571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:29 Heat of formation + Delta-G solvation = 0.772510 kcal Electronic energy + Delta-G solvation = -20676.846862 eV Core-core repulsion = 17491.554770 eV Total energy + Delta-G solvation = -3185.292092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92259 -39.48453 -36.97420 -35.10510 -33.44643 -32.44282 -31.67875 -31.03175 -29.79068 -26.04606 -25.17556 -23.82299 -22.75813 -21.42868 -21.02186 -20.78309 -18.54770 -17.53660 -17.07628 -16.14292 -15.98827 -15.67710 -15.31301 -14.73508 -14.54576 -14.22775 -14.14054 -13.98509 -13.82215 -13.65017 -13.04830 -12.68407 -12.34015 -12.27651 -12.08463 -11.76788 -11.36190 -11.04146 -10.95073 -10.62777 -10.48140 -10.44229 -10.26968 -10.13641 -9.83673 -9.61149 -9.59016 -9.33729 -8.91289 -7.25084 -5.78750 -3.14278 0.35778 0.70730 2.60740 2.78178 3.36005 3.39339 3.43978 3.51228 4.04596 4.19198 4.37751 4.56129 4.57388 4.58149 4.68947 4.86739 4.98520 5.11726 5.27714 5.34623 5.36542 5.42478 5.47284 5.51047 5.60821 5.65187 5.79093 5.86701 5.92483 6.02255 6.05172 6.19589 6.22893 6.27910 6.70289 6.73759 7.17584 7.52365 7.86537 7.97542 8.40574 9.19679 9.92302 10.12096 11.39753 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.004021 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.447179 B = 6962.493608 C = 8216.366823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.131 4.131 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.246 4.246 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.712 5.712 17 C 0.558 3.442 18 O -0.531 6.531 19 C -0.086 4.086 20 C -0.141 4.141 21 C 0.098 3.902 22 N -0.471 5.471 23 C 0.095 3.905 24 C -0.117 4.117 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.360 0.640 35 H 0.260 0.740 36 H 0.401 0.599 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.491 1.812 18.630 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.169 4.169 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.715 3.285 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.204 1.204 16 N -0.364 5.364 17 C 0.344 3.656 18 O -0.408 6.408 19 C -0.098 4.098 20 C -0.161 4.161 21 C -0.059 4.059 22 N -0.180 5.180 23 C -0.062 4.062 24 C -0.138 4.138 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.237 0.763 37 H 0.159 0.841 38 H 0.181 0.819 39 H 0.180 0.820 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.362 2.117 19.144 25.273 hybrid contribution 0.675 0.551 0.021 0.871 sum -15.687 2.667 19.165 24.910 Atomic orbital electron populations 1.22174 0.95066 1.02209 1.02631 1.21130 0.93903 0.97841 0.83502 0.89078 1.21856 0.96590 1.01040 0.96676 1.21800 0.94095 1.01470 0.99507 1.20624 0.84904 0.97066 0.94414 1.42735 1.01745 1.66959 1.28920 1.19074 0.89914 1.27388 1.01183 0.89225 1.24674 0.96180 1.00482 0.97807 1.69700 1.07341 1.49301 1.31902 0.86548 0.79782 0.79996 0.82207 1.21074 1.21631 1.20388 1.46032 1.66608 1.14249 1.09533 1.18174 0.77869 0.86493 0.83047 1.90778 1.49830 1.15263 1.84880 1.20434 1.00201 0.94344 0.94790 1.22408 0.98729 0.94277 1.00729 1.22810 0.95024 1.00522 0.87554 1.67572 1.13411 1.08941 1.28116 1.22837 0.94629 0.90137 0.98557 1.22340 0.97263 1.02108 0.92061 0.91238 0.92275 0.92364 0.91118 0.89818 0.91910 0.92198 0.95660 0.95620 0.80730 0.93031 0.76299 0.84147 0.81918 0.81962 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.14 1.42 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.27 4.75 -26.73 -0.13 -1.40 16 5 C -0.13 -1.84 5.22 -26.73 -0.14 -1.98 16 6 C 0.16 2.92 6.26 -4.04 -0.03 2.90 16 7 N -0.76 -18.16 5.41 -59.91 -0.32 -18.49 16 8 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 9 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 10 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 11 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 12 Si 0.88 22.37 27.73 -169.99 -4.71 17.66 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.30 16 16 N -0.71 -6.94 4.49 -54.65 -0.25 -7.18 16 17 C 0.56 6.54 7.76 -12.19 -0.09 6.44 16 18 O -0.53 -7.91 16.11 5.35 0.09 -7.82 16 19 C -0.09 -0.87 5.91 -104.64 -0.62 -1.49 16 20 C -0.14 -1.16 9.62 -39.02 -0.38 -1.53 16 21 C 0.10 0.82 11.17 -17.59 -0.20 0.63 16 22 N -0.47 -4.69 10.33 -13.31 -0.14 -4.83 16 23 C 0.10 0.82 11.17 -17.59 -0.20 0.63 16 24 C -0.12 -1.11 9.68 -39.02 -0.38 -1.48 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 35 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 36 H 0.40 3.07 6.74 -40.82 -0.28 2.79 16 37 H 0.14 0.81 6.54 -52.49 -0.34 0.46 16 38 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.15 1.30 7.74 -52.49 -0.41 0.90 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -35.16 337.86 -7.56 -42.73 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.87 Total: 5.90 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -2.23 Total: -4.28 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.07 Total: -59.27 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.16 -7.56 -42.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734226571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.498 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds