Wall clock time and date at job start Mon Mar 30 2020 02:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 5 5 C 1.53002 * 109.47645 * 174.99822 * 4 2 1 6 6 C 1.52999 * 109.47304 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.47174 * 179.97438 * 6 5 4 8 8 C 1.36928 * 120.00140 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00075 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00125 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 120.00009 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47325 * 90.00402 * 12 10 8 14 14 H 1.48507 * 109.47248 * 210.00475 * 12 10 8 15 15 H 1.48498 * 109.47082 * 330.00120 * 12 10 8 16 16 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 17 17 C 1.34775 * 119.99693 * 275.00198 * 16 2 1 18 18 O 1.21512 * 120.00267 * 359.97438 * 17 16 2 19 19 C 1.48156 * 119.99792 * 179.97438 * 17 16 2 20 20 C 1.39822 * 120.92074 * 359.71441 * 19 17 16 21 21 C 1.38151 * 118.99903 * 179.80305 * 20 19 17 22 22 N 1.31808 * 120.89336 * 0.48264 * 21 20 19 23 23 C 1.31809 * 122.05533 * 359.74567 * 22 21 20 24 24 C 1.38149 * 120.89398 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 29 29 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 30 30 H 1.08993 * 109.47092 * 300.00720 * 5 4 2 31 31 H 1.09007 * 109.46700 * 60.00493 * 5 4 2 32 32 H 1.09001 * 109.47622 * 300.00794 * 6 5 4 33 33 H 1.09007 * 109.46705 * 60.00661 * 6 5 4 34 34 H 0.97006 * 119.99928 * 0.02562 * 7 6 5 35 35 H 0.96999 * 120.00259 * 179.97438 * 11 10 8 36 36 H 0.97000 * 120.00117 * 94.99845 * 16 2 1 37 37 H 1.08002 * 120.49932 * 359.97438 * 20 19 17 38 38 H 1.08001 * 119.54893 * 180.23055 * 21 20 19 39 39 H 1.07996 * 119.55829 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.50518 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6134 -1.3137 6 6 4.0749 -1.3352 -2.5626 7 7 5.5349 -1.2313 -2.6247 8 6 6.2186 -1.8055 -3.6629 9 1 5.6815 -2.3346 -4.4362 10 6 7.6020 -1.7075 -3.7214 11 7 8.2593 -2.2598 -4.7190 12 14 8.5309 -0.7917 -2.3843 13 1 8.8923 -1.7362 -1.2969 14 1 9.7667 -0.1996 -2.9567 15 1 7.6722 0.2889 -1.8364 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8584 1.1609 2.4116 19 6 2.6404 -0.7167 3.5670 20 6 2.9724 -2.0744 3.5276 21 6 3.4325 -2.6851 4.6782 22 7 3.5507 -2.0079 5.8028 23 6 3.2444 -0.7285 5.8846 24 6 2.7812 -0.0381 4.7812 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7516 -1.7716 -1.2056 29 1 1.6054 -0.2618 -2.1370 30 1 3.8532 0.4368 -1.3573 31 1 3.9995 -1.0729 -0.4260 32 1 3.7865 -2.3855 -2.5185 33 1 3.6403 -0.8760 -3.4506 34 1 6.0172 -0.7558 -1.9303 35 1 9.2259 -2.1910 -4.7602 36 1 2.2491 -1.6318 1.1527 37 1 2.8733 -2.6366 2.6107 38 1 3.6950 -3.7324 4.6569 39 1 3.3563 -0.2130 6.8270 40 1 2.5318 1.0100 4.8554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734226571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:28 Heat of formation + Delta-G solvation = -23.968128 kcal Electronic energy + Delta-G solvation = -20677.919696 eV Core-core repulsion = 17491.554770 eV Total energy + Delta-G solvation = -3186.364927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.67483 -40.26973 -38.06242 -36.67431 -34.47276 -33.85523 -32.66324 -32.12613 -30.98302 -27.40289 -26.01269 -24.54698 -24.30392 -22.62761 -22.19520 -21.63355 -19.63925 -19.29621 -17.87300 -16.85300 -16.75867 -16.62709 -16.38678 -16.19347 -15.82805 -15.68829 -15.02106 -14.90367 -14.75145 -14.56616 -14.54685 -13.91831 -13.58411 -13.51368 -13.09669 -12.85771 -12.70703 -12.50837 -12.14728 -12.06715 -11.88993 -11.77698 -11.57094 -11.36775 -11.01614 -10.98502 -10.54474 -10.21855 -10.18093 -9.31135 -8.05224 -5.38471 -0.36603 0.07670 1.35640 1.38251 1.45831 1.78513 1.99379 2.45746 2.83074 3.26472 3.42622 3.48841 3.52671 3.77831 3.88057 3.93309 4.04655 4.08412 4.14952 4.36954 4.51409 4.53806 4.62265 4.77069 4.78995 4.80900 4.84093 4.88198 4.96066 5.02693 5.11560 5.29477 5.31473 5.40902 5.49921 5.59416 5.74102 6.19629 6.39818 6.88275 7.04948 7.06186 7.83609 8.01043 9.16445 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014800 B = 0.004021 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.447179 B = 6962.493608 C = 8216.366823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.070 0.930 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.237 4.237 9 H 0.058 0.942 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.954 3.046 13 H -0.275 1.275 14 H -0.295 1.295 15 H -0.257 1.257 16 N -0.702 5.702 17 C 0.556 3.444 18 O -0.571 6.571 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.092 3.908 22 N -0.492 5.492 23 C 0.093 3.907 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.023 0.977 34 H 0.364 0.636 35 H 0.259 0.741 36 H 0.413 0.587 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.186 0.814 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 1.504 20.204 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.157 4.157 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.368 4.368 9 H 0.076 0.924 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.201 1.201 14 H -0.222 1.222 15 H -0.181 1.181 16 N -0.354 5.354 17 C 0.343 3.657 18 O -0.451 6.451 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.065 4.065 22 N -0.202 5.202 23 C -0.063 4.063 24 C -0.148 4.148 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.251 0.749 37 H 0.184 0.816 38 H 0.206 0.794 39 H 0.203 0.797 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.244 1.791 20.734 27.028 hybrid contribution 0.853 0.583 -0.530 1.162 sum -16.391 2.374 20.204 26.125 Atomic orbital electron populations 1.22111 0.93705 1.03168 1.02442 1.21055 0.94879 0.96747 0.83431 0.91219 1.21770 0.93615 1.02495 0.97083 1.21679 0.96664 1.00119 0.97241 1.20857 0.81976 0.98015 0.96574 1.42811 1.03893 1.66506 1.27693 1.19088 0.90192 1.26240 1.01326 0.92373 1.25501 0.97289 1.02148 1.00505 1.69878 1.07545 1.51548 1.34432 0.85421 0.78093 0.79164 0.79164 1.20136 1.22157 1.18144 1.45981 1.65793 1.14747 1.08919 1.18446 0.77301 0.86092 0.83826 1.90755 1.51788 1.17004 1.85546 1.20464 1.01351 0.95331 0.94334 1.22650 0.97636 0.93464 1.01766 1.23291 0.94375 1.01640 0.87157 1.67625 1.14051 1.09490 1.29040 1.23192 0.93941 0.89952 0.99240 1.22449 0.97685 1.02274 0.92405 0.90128 0.93814 0.90784 0.89060 0.88893 0.92879 0.91654 0.95012 0.95924 0.80317 0.93264 0.74866 0.81630 0.79426 0.79670 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 2 C 0.14 2.59 2.57 44.99 0.12 2.71 16 3 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.11 -1.96 4.75 30.59 0.15 -1.81 16 5 C -0.12 -3.06 5.22 30.59 0.16 -2.90 16 6 C 0.15 5.36 6.26 86.38 0.54 5.90 16 7 N -0.76 -35.49 5.41 -343.45 -1.86 -37.35 16 8 C -0.24 -13.62 10.47 84.03 0.88 -12.74 16 9 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 10 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 11 N -0.98 -63.23 13.97 21.65 0.30 -62.93 16 12 Si 0.95 45.78 27.73 68.60 1.90 47.68 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.26 -11.27 6.52 99.48 0.65 -10.62 16 16 N -0.70 -12.19 4.49 -445.12 -2.00 -14.18 16 17 C 0.56 12.48 7.76 86.88 0.67 13.15 16 18 O -0.57 -17.05 16.11 -3.75 -0.06 -17.11 16 19 C -0.10 -1.96 5.91 -19.88 -0.12 -2.08 16 20 C -0.13 -1.90 9.62 22.63 0.22 -1.68 16 21 C 0.09 1.34 11.17 84.68 0.95 2.28 16 22 N -0.49 -8.96 10.33 -196.01 -2.03 -10.98 16 23 C 0.09 1.50 11.17 84.67 0.95 2.44 16 24 C -0.13 -2.33 9.68 22.63 0.22 -2.11 16 25 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.62 7.75 -2.38 -0.02 1.60 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.36 16.27 5.53 -92.70 -0.51 15.76 16 35 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 36 H 0.41 5.02 6.74 -92.71 -0.63 4.40 16 37 H 0.17 1.33 6.54 -2.91 -0.02 1.31 16 38 H 0.19 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 2.61 7.74 -2.91 -0.02 2.59 16 Total: -1.00 -76.77 337.86 1.99 -74.77 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.15 Total: 21.89 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.88 Total: -1.79 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -5.58 Total: -125.45 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Total: -76.77 1.99 -74.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734226571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.807 kcal (2) G-P(sol) polarization free energy of solvation -76.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds