Wall clock time and date at job start Mon Mar 30 2020 02:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.53002 * 109.46943 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46829 * 180.02562 * 6 5 4 8 8 C 1.36942 * 120.00101 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31615 * 120.00099 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00083 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46946 * 90.00120 * 12 10 8 14 14 H 1.48498 * 109.47022 * 210.00189 * 12 10 8 15 15 H 1.48509 * 109.46962 * 329.99782 * 12 10 8 16 16 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 17 17 C 1.34780 * 119.99910 * 85.00011 * 16 2 1 18 18 O 1.21520 * 119.99606 * 0.02562 * 17 16 2 19 19 C 1.48146 * 119.99869 * 180.02562 * 17 16 2 20 20 C 1.39811 * 120.92606 * 359.71533 * 19 17 16 21 21 C 1.38143 * 119.00432 * 179.79884 * 20 19 17 22 22 N 1.31814 * 120.89823 * 0.48839 * 21 20 19 23 23 C 1.31815 * 122.04427 * 359.74185 * 22 21 20 24 24 C 1.38152 * 120.89677 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 31 31 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 32 32 H 1.09000 * 109.47511 * 300.00080 * 6 5 4 33 33 H 1.09000 * 109.47059 * 60.00345 * 6 5 4 34 34 H 0.96994 * 120.00527 * 359.97438 * 7 6 5 35 35 H 0.97003 * 120.00280 * 179.97438 * 11 10 8 36 36 H 0.96994 * 119.99975 * 265.00388 * 16 2 1 37 37 H 1.08005 * 120.49465 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.55627 * 180.23365 * 21 20 19 39 39 H 1.08002 * 119.55221 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.49667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3350 2.5627 7 7 5.5348 -1.2311 2.6247 8 6 6.2187 -1.8061 3.6625 9 1 5.6817 -2.3358 4.4354 10 6 7.6021 -1.7081 3.7210 11 7 8.2565 -1.0622 2.7793 12 14 8.5349 -2.4919 5.1370 13 1 8.8972 -3.8868 4.7792 14 1 9.7703 -1.7134 5.4070 15 1 7.6788 -2.4984 6.3504 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8585 1.1609 -2.4115 19 6 2.6405 -0.7169 -3.5668 20 6 2.9837 -2.0715 -3.5245 21 6 3.4355 -2.6843 -4.6772 22 7 3.5536 -2.0074 -5.8020 23 6 3.2455 -0.7284 -5.8842 24 6 2.7816 -0.0382 -4.7810 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 3.9995 -1.0728 0.4261 31 1 3.8532 0.4370 1.3574 32 1 3.6402 -0.8759 3.4506 33 1 3.7865 -2.3852 2.5186 34 1 6.0172 -0.7557 1.9304 35 1 9.2232 -0.9934 2.8203 36 1 2.2490 -1.6317 -1.1525 37 1 2.8934 -2.6314 -2.6053 38 1 3.6994 -3.7314 -4.6556 39 1 3.3574 -0.2130 -6.8267 40 1 2.5315 1.0098 -4.8555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734226573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:32 Heat of formation + Delta-G solvation = -3.331521 kcal Electronic energy + Delta-G solvation = -20587.848200 eV Core-core repulsion = 17402.378143 eV Total energy + Delta-G solvation = -3185.470056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84185 -39.40117 -36.86050 -34.90973 -33.36668 -32.39739 -31.59645 -30.84525 -29.40648 -25.81288 -25.07560 -23.75146 -23.01423 -21.44874 -20.84677 -20.70708 -18.47163 -17.03494 -16.99759 -16.06434 -15.90499 -15.60140 -15.22483 -14.69508 -14.49877 -14.13645 -14.06623 -13.81619 -13.72568 -13.50180 -13.02459 -12.75691 -12.26445 -12.15865 -12.00690 -11.36192 -11.23182 -10.87982 -10.83640 -10.54618 -10.46338 -10.37150 -10.19036 -10.02954 -9.76446 -9.70301 -9.51358 -9.24661 -8.87906 -6.92895 -5.76975 -3.06020 0.43719 0.78395 2.68882 2.86766 3.42801 3.47657 3.49789 3.58988 4.11868 4.27389 4.45233 4.55545 4.64743 4.71842 4.76601 4.96565 5.07589 5.19300 5.36300 5.43774 5.47495 5.52341 5.56293 5.56919 5.70187 5.74679 5.90588 6.00501 6.04968 6.15344 6.27190 6.31747 6.36272 6.37553 6.83156 6.86558 7.26162 7.59567 7.68784 7.95052 8.41961 9.52775 10.11510 10.45667 11.45970 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003530 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.756173 B = 7930.308235 C = 9135.907123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.711 5.711 17 C 0.559 3.441 18 O -0.531 6.531 19 C -0.086 4.086 20 C -0.140 4.140 21 C 0.097 3.903 22 N -0.471 5.471 23 C 0.095 3.905 24 C -0.117 4.117 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.401 0.599 37 H 0.141 0.859 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -0.961 -14.043 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.207 1.207 16 N -0.363 5.363 17 C 0.345 3.655 18 O -0.408 6.408 19 C -0.097 4.097 20 C -0.161 4.161 21 C -0.059 4.059 22 N -0.181 5.181 23 C -0.062 4.062 24 C -0.137 4.137 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.237 0.763 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.180 0.820 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.144 -0.611 -14.616 21.786 hybrid contribution 0.634 -0.340 1.385 1.561 sum -15.510 -0.950 -13.231 20.409 Atomic orbital electron populations 1.22176 0.95193 1.02125 1.02576 1.21122 0.93764 0.97902 0.83559 0.89057 1.21863 0.96955 1.00805 0.96537 1.21745 0.93563 1.01561 0.99569 1.20642 0.86233 0.96406 0.94165 1.42383 1.00185 1.66209 1.29114 1.19241 0.89462 1.27145 1.01373 0.91208 1.24751 0.96449 1.01164 0.98659 1.69662 1.07224 1.46857 1.34493 0.86186 0.79525 0.78653 0.81811 1.21699 1.21731 1.20748 1.46014 1.66567 1.14235 1.09511 1.18167 0.77849 0.86480 0.83045 1.90777 1.49881 1.15251 1.84903 1.20427 1.00126 0.94362 0.94787 1.22399 0.98648 0.94326 1.00680 1.22798 0.95094 1.00490 0.87560 1.67575 1.13353 1.08972 1.28166 1.22831 0.94676 0.90160 0.98543 1.22336 0.97284 1.02050 0.92072 0.92435 0.92286 0.91306 0.90027 0.91338 0.92139 0.91872 0.96468 0.96577 0.78343 0.93496 0.76319 0.84164 0.81954 0.81990 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 2 C 0.14 1.53 2.57 -67.93 -0.17 1.36 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -1.38 4.75 -26.73 -0.13 -1.50 16 5 C -0.13 -1.94 5.22 -26.73 -0.14 -2.08 16 6 C 0.15 3.02 6.26 -4.04 -0.03 2.99 16 7 N -0.73 -18.89 5.60 -59.91 -0.34 -19.22 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 12 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 N -0.71 -7.51 4.49 -54.65 -0.25 -7.75 16 17 C 0.56 6.97 7.76 -12.19 -0.09 6.87 16 18 O -0.53 -8.30 16.11 5.35 0.09 -8.22 16 19 C -0.09 -0.93 5.91 -104.65 -0.62 -1.55 16 20 C -0.14 -1.25 9.62 -39.03 -0.38 -1.63 16 21 C 0.10 0.88 11.17 -17.59 -0.20 0.68 16 22 N -0.47 -4.95 10.34 -13.30 -0.14 -5.09 16 23 C 0.09 0.87 11.17 -17.59 -0.20 0.68 16 24 C -0.12 -1.18 9.68 -39.02 -0.38 -1.55 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.38 10.40 7.67 -40.82 -0.31 10.09 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.40 3.41 6.74 -40.82 -0.28 3.14 16 37 H 0.14 0.92 6.54 -52.48 -0.34 0.57 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.15 1.39 7.74 -52.49 -0.41 0.98 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -34.41 340.98 -7.92 -42.33 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.91 Total: 7.60 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.22 Total: -4.39 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.01 Total: -59.94 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.41 -7.92 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734226573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.002 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds