Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.53002 * 109.46943 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.46829 * 180.02562 * 6 5 4 8 8 C 1.36942 * 120.00101 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99697 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00148 * 179.97438 * 8 7 6 11 11 N 1.31615 * 120.00099 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00083 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46946 * 90.00120 * 12 10 8 14 14 H 1.48498 * 109.47022 * 210.00189 * 12 10 8 15 15 H 1.48509 * 109.46962 * 329.99782 * 12 10 8 16 16 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 17 17 C 1.34780 * 119.99910 * 85.00011 * 16 2 1 18 18 O 1.21520 * 119.99606 * 0.02562 * 17 16 2 19 19 C 1.48146 * 119.99869 * 180.02562 * 17 16 2 20 20 C 1.39811 * 120.92606 * 359.71533 * 19 17 16 21 21 C 1.38143 * 119.00432 * 179.79884 * 20 19 17 22 22 N 1.31814 * 120.89823 * 0.48839 * 21 20 19 23 23 C 1.31815 * 122.04427 * 359.74185 * 22 21 20 24 24 C 1.38152 * 120.89677 * 0.02562 * 23 22 21 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 29 29 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 30 30 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 31 31 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 32 32 H 1.09000 * 109.47511 * 300.00080 * 6 5 4 33 33 H 1.09000 * 109.47059 * 60.00345 * 6 5 4 34 34 H 0.96994 * 120.00527 * 359.97438 * 7 6 5 35 35 H 0.97003 * 120.00280 * 179.97438 * 11 10 8 36 36 H 0.96994 * 119.99975 * 265.00388 * 16 2 1 37 37 H 1.08005 * 120.49465 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.55627 * 180.23365 * 21 20 19 39 39 H 1.08002 * 119.55221 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.49667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0748 -1.3350 2.5627 7 7 5.5348 -1.2311 2.6247 8 6 6.2187 -1.8061 3.6625 9 1 5.6817 -2.3358 4.4354 10 6 7.6021 -1.7081 3.7210 11 7 8.2565 -1.0622 2.7793 12 14 8.5349 -2.4919 5.1370 13 1 8.8972 -3.8868 4.7792 14 1 9.7703 -1.7134 5.4070 15 1 7.6788 -2.4984 6.3504 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8585 1.1609 -2.4115 19 6 2.6405 -0.7169 -3.5668 20 6 2.9837 -2.0715 -3.5245 21 6 3.4355 -2.6843 -4.6772 22 7 3.5536 -2.0074 -5.8020 23 6 3.2455 -0.7284 -5.8842 24 6 2.7816 -0.0382 -4.7810 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6054 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2056 30 1 3.9995 -1.0728 0.4261 31 1 3.8532 0.4370 1.3574 32 1 3.6402 -0.8759 3.4506 33 1 3.7865 -2.3852 2.5186 34 1 6.0172 -0.7557 1.9304 35 1 9.2232 -0.9934 2.8203 36 1 2.2490 -1.6317 -1.1525 37 1 2.8934 -2.6314 -2.6053 38 1 3.6994 -3.7314 -4.6556 39 1 3.3574 -0.2130 -6.8267 40 1 2.5315 1.0098 -4.8555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734226573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = -26.982613 kcal Electronic energy + Delta-G solvation = -20588.873788 eV Core-core repulsion = 17402.378143 eV Total energy + Delta-G solvation = -3186.495644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66821 -40.26183 -38.00314 -36.55139 -34.45616 -33.78055 -32.50879 -31.99351 -30.76545 -27.26049 -26.02214 -24.76609 -24.41085 -22.56953 -22.13204 -21.63449 -19.32785 -19.09888 -17.87109 -16.84732 -16.77562 -16.62966 -16.35500 -16.18985 -15.75863 -15.39855 -15.22487 -14.92074 -14.76711 -14.55546 -14.41584 -13.87150 -13.44668 -13.19374 -13.02882 -12.77575 -12.70168 -12.40143 -12.26239 -12.09170 -11.87364 -11.74753 -11.51863 -11.36309 -11.00868 -10.93550 -10.54252 -10.21121 -10.17423 -9.01172 -7.96324 -5.25787 -0.36107 0.08396 1.47094 1.49121 1.57666 1.78701 2.00267 2.55568 2.83700 3.37727 3.45368 3.49739 3.63326 3.80838 3.93854 3.96766 4.05207 4.09873 4.27408 4.38416 4.51865 4.57232 4.66066 4.77930 4.79565 4.81862 4.85782 4.90501 4.96647 5.03262 5.11836 5.30045 5.33607 5.42375 5.49976 5.50907 5.59989 6.26182 6.39820 6.88556 7.05076 7.31794 8.09187 8.30716 9.27484 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.003530 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.756173 B = 7930.308235 C = 9135.907123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.248 4.248 9 H 0.078 0.922 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.284 1.284 14 H -0.296 1.296 15 H -0.268 1.268 16 N -0.702 5.702 17 C 0.556 3.444 18 O -0.572 6.572 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.092 3.908 22 N -0.491 5.491 23 C 0.093 3.907 24 C -0.127 4.127 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.020 0.980 33 H 0.028 0.972 34 H 0.371 0.629 35 H 0.251 0.749 36 H 0.413 0.587 37 H 0.165 0.835 38 H 0.189 0.811 39 H 0.188 0.812 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -2.670 -13.479 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.085 0.915 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.211 1.211 14 H -0.223 1.223 15 H -0.193 1.193 16 N -0.354 5.354 17 C 0.343 3.657 18 O -0.452 6.452 19 C -0.115 4.115 20 C -0.156 4.156 21 C -0.064 4.064 22 N -0.201 5.201 23 C -0.063 4.063 24 C -0.148 4.148 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.046 0.954 34 H 0.202 0.798 35 H 0.060 0.940 36 H 0.251 0.749 37 H 0.182 0.818 38 H 0.206 0.794 39 H 0.205 0.795 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.268 -2.361 -14.031 22.374 hybrid contribution 0.917 0.182 1.199 1.520 sum -16.351 -2.179 -12.832 20.899 Atomic orbital electron populations 1.22104 0.93483 1.03229 1.02481 1.21062 0.94994 0.96645 0.83483 0.91517 1.21766 0.93490 1.02428 0.97061 1.21609 0.96534 0.99719 0.97372 1.20863 0.83090 0.97499 0.96171 1.42665 1.02615 1.65878 1.28234 1.19684 0.90029 1.26361 1.01874 0.90438 1.25612 0.97535 1.02374 1.01417 1.69827 1.07080 1.48779 1.36595 0.85116 0.77841 0.77542 0.79125 1.21138 1.22297 1.19280 1.45972 1.65776 1.14718 1.08937 1.18464 0.77288 0.86098 0.83864 1.90750 1.51855 1.16977 1.85587 1.20462 1.01345 0.95374 0.94347 1.22638 0.97668 0.93524 1.01744 1.23286 0.94375 1.01643 0.87122 1.67634 1.13942 1.09507 1.29024 1.23206 0.93881 0.89970 0.99229 1.22454 0.97724 1.02232 0.92400 0.90667 0.93788 0.90045 0.88841 0.89020 0.92390 0.93655 0.96247 0.95422 0.79759 0.94017 0.74932 0.81781 0.79368 0.79549 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.48 71.98 0.68 -1.91 16 2 C 0.14 2.92 2.57 44.99 0.12 3.03 16 3 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 4 C -0.11 -2.17 4.75 30.59 0.15 -2.03 16 5 C -0.11 -3.39 5.22 30.59 0.16 -3.23 16 6 C 0.15 5.70 6.26 86.38 0.54 6.24 16 7 N -0.75 -38.49 5.60 -343.45 -1.92 -40.41 16 8 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 11 N -0.97 -60.22 13.06 21.65 0.28 -59.93 16 12 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 13 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 N -0.70 -13.99 4.49 -445.12 -2.00 -15.99 16 17 C 0.56 13.85 7.76 86.87 0.67 14.53 16 18 O -0.57 -18.43 16.11 -3.78 -0.06 -18.49 16 19 C -0.10 -2.21 5.91 -19.88 -0.12 -2.33 16 20 C -0.14 -2.21 9.62 22.63 0.22 -1.99 16 21 C 0.09 1.51 11.17 84.67 0.95 2.45 16 22 N -0.49 -9.73 10.34 -196.01 -2.03 -11.75 16 23 C 0.09 1.66 11.17 84.67 0.95 2.60 16 24 C -0.13 -2.57 9.68 22.63 0.22 -2.35 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.74 7.75 -2.39 -0.02 1.72 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.37 20.44 7.67 -92.71 -0.71 19.73 16 35 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 36 H 0.41 6.11 6.74 -92.71 -0.63 5.49 16 37 H 0.16 1.73 6.54 -2.91 -0.02 1.71 16 38 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.15 2.88 7.74 -2.91 -0.02 2.86 16 Total: -1.00 -74.46 340.98 1.85 -72.61 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.29 Total: 27.97 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.84 Total: -2.05 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -5.67 Total: -128.09 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -74.46 1.85 -72.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734226573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.630 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds