Wall clock time and date at job start Mon Mar 30 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47128 * 2 1 4 4 C 1.53004 * 109.46881 * 239.99500 * 2 1 3 5 5 C 1.53004 * 109.46760 * 174.99756 * 4 2 1 6 6 N 1.46503 * 109.46947 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00153 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99677 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00076 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00028 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47316 * 119.99899 * 11 9 7 14 14 H 1.48499 * 109.47360 * 240.00304 * 11 9 7 15 15 N 1.46502 * 109.47308 * 119.99978 * 2 1 3 16 16 C 1.34772 * 119.99938 * 275.00283 * 15 2 1 17 17 O 1.21781 * 119.99975 * 359.97438 * 16 15 2 18 18 C 1.41522 * 120.00226 * 179.72456 * 16 15 2 19 19 C 1.35616 * 120.00213 * 186.84957 * 18 16 15 20 20 C 1.41670 * 119.99655 * 8.11040 * 19 18 16 21 21 C 1.38286 * 126.25706 * 217.69263 * 20 19 18 22 22 C 1.39787 * 107.07665 * 179.85109 * 21 20 19 23 23 C 1.35498 * 107.90719 * 0.42478 * 22 21 20 24 24 N 1.35750 * 108.91143 * 359.73501 * 23 22 21 25 25 H 0.97010 * 125.68567 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47219 * 299.99888 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00296 * 1 2 3 29 29 H 1.08991 * 109.47672 * 295.00120 * 4 2 1 30 30 H 1.09008 * 109.46741 * 55.00686 * 4 2 1 31 31 H 1.08996 * 109.47610 * 300.00230 * 5 4 2 32 32 H 1.08996 * 109.47000 * 60.00675 * 5 4 2 33 33 H 0.97002 * 119.99817 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99818 * 180.02562 * 10 9 7 35 35 H 0.97003 * 120.00327 * 94.99786 * 15 2 1 36 36 H 1.08004 * 119.99357 * 6.84663 * 18 16 15 37 37 H 1.08003 * 119.99341 * 188.11252 * 19 18 16 38 38 H 1.08000 * 126.45684 * 359.97438 * 21 20 19 39 39 H 1.08002 * 126.04284 * 180.13785 * 22 21 20 40 40 H 1.08004 * 125.54388 * 179.71996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3036 -2.5102 7 6 5.3950 -1.3394 -2.7802 8 1 6.0935 -0.8592 -2.1110 9 6 5.8577 -1.9938 -3.9136 10 7 5.0065 -2.5795 -4.7289 11 14 7.6884 -2.0433 -4.2817 12 1 8.4269 -1.3161 -3.2181 13 1 8.1466 -3.4551 -4.3250 14 1 7.9471 -1.3983 -5.5940 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8578 1.1634 2.4117 18 6 2.6133 -0.6868 3.5141 19 6 2.6117 -0.0506 4.7118 20 6 1.9879 1.2148 4.8408 21 6 2.4382 2.2743 5.6069 22 6 1.5249 3.3193 5.4396 23 6 0.5496 2.8902 4.6025 24 7 0.8192 1.6125 4.2312 25 1 0.2782 1.0701 3.6360 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7516 -1.7716 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4260 33 1 3.4257 -1.7346 -3.1114 34 1 5.3299 -3.0371 -5.5207 35 1 2.2491 -1.6318 1.1527 36 1 2.9703 -1.7036 3.4431 37 1 3.0860 -0.5087 5.5671 38 1 3.3288 2.2918 6.2176 39 1 1.5836 4.2944 5.9001 40 1 -0.3035 3.4702 4.2829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753961481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:06 Heat of formation + Delta-G solvation = 51.881318 kcal Electronic energy + Delta-G solvation = -20956.607277 eV Core-core repulsion = 17773.531429 eV Total energy + Delta-G solvation = -3183.075848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27735 -39.65034 -36.67468 -34.40331 -33.76522 -31.98270 -30.87088 -30.70135 -28.17237 -27.90267 -24.44829 -23.67514 -21.65035 -21.05237 -20.56774 -20.31606 -19.69087 -18.15853 -17.07177 -16.65959 -15.67304 -14.93023 -14.74162 -14.58093 -14.22859 -13.84099 -13.71601 -13.48888 -13.34119 -13.32539 -12.94467 -12.82917 -12.41980 -12.23823 -12.00781 -11.88073 -11.24018 -11.04145 -10.81633 -10.66578 -10.58321 -10.03070 -9.99608 -9.84369 -9.71661 -9.06390 -8.88402 -8.62425 -7.64335 -6.94019 -5.78381 -3.07139 0.64696 2.59299 3.00103 3.32209 3.42482 3.44431 3.48421 3.50676 3.50681 4.55930 4.80325 4.89328 4.98427 5.17863 5.19988 5.30993 5.34798 5.42552 5.51563 5.53196 5.67426 5.70028 5.87005 5.90121 5.92884 6.00455 6.21218 6.23306 6.27215 6.31208 6.32901 6.56014 6.80092 6.85300 6.97279 7.15369 7.59339 7.64166 7.69723 8.28354 8.40735 9.51877 10.09319 10.44080 11.44653 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.003247 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.941475 B = 8620.835253 C = 9172.596850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.713 5.713 16 C 0.539 3.461 17 O -0.549 6.549 18 C -0.244 4.244 19 C 0.020 3.980 20 C 0.017 3.983 21 C -0.160 4.160 22 C -0.218 4.218 23 C 0.013 3.987 24 N -0.497 5.497 25 H 0.414 0.586 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.401 0.599 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 5.087 20.040 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.363 5.363 16 C 0.330 3.670 17 O -0.430 6.430 18 C -0.266 4.266 19 C 0.000 4.000 20 C -0.096 4.096 21 C -0.185 4.185 22 C -0.242 4.242 23 C -0.125 4.125 24 N -0.090 5.090 25 H 0.253 0.747 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.236 0.764 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.753 5.830 19.934 23.864 hybrid contribution 0.849 -0.946 -0.973 1.601 sum -10.904 4.884 18.961 22.412 Atomic orbital electron populations 1.22138 0.95618 1.01873 1.01996 1.20952 0.93324 0.97803 0.84000 0.89391 1.22059 0.98101 1.00719 0.96411 1.20622 0.90335 0.95607 0.90731 1.42377 1.05407 1.65000 1.25063 1.19286 0.83843 1.28381 1.05492 0.91180 1.24747 0.97784 1.00895 0.97650 1.69671 1.32722 1.40780 1.15149 0.86108 0.85015 0.77227 0.77824 1.20519 1.21835 1.21813 1.46159 1.66285 1.14030 1.09862 1.17253 0.78316 0.87237 0.84244 1.90896 1.51212 1.15426 1.85440 1.22119 1.09287 1.02037 0.93120 1.20806 0.91766 0.90538 0.96932 1.17962 0.92702 0.96396 1.02519 1.21281 1.00880 0.93437 1.02910 1.20681 0.97522 1.00163 1.05852 1.21882 1.02239 0.86030 1.02326 1.42239 1.19518 1.12169 1.35052 0.74659 0.92541 0.92902 0.91539 0.91421 0.90349 0.96489 0.96369 0.78346 0.93562 0.76412 0.85008 0.84026 0.84745 0.85034 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.38 16 2 C 0.14 1.90 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.13 -2.07 4.87 -26.73 -0.13 -2.20 16 5 C 0.15 3.13 6.15 -4.04 -0.02 3.11 16 6 N -0.73 -18.81 5.60 -59.91 -0.34 -19.14 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 11 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 15 N -0.71 -8.63 4.52 -56.72 -0.26 -8.89 16 16 C 0.54 6.90 6.98 -15.01 -0.10 6.80 16 17 O -0.55 -8.40 11.28 5.12 0.06 -8.34 16 18 C -0.24 -2.50 9.85 -39.27 -0.39 -2.89 16 19 C 0.02 0.20 9.96 -39.21 -0.39 -0.19 16 20 C 0.02 0.20 5.37 -83.91 -0.45 -0.25 16 21 C -0.16 -1.88 10.86 -38.98 -0.42 -2.30 16 22 C -0.22 -2.48 10.81 -39.98 -0.43 -2.92 16 23 C 0.01 0.14 11.90 -16.80 -0.20 -0.06 16 24 N -0.50 -5.78 3.91 -10.57 -0.04 -5.82 16 25 H 0.41 4.53 7.31 -40.82 -0.30 4.24 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 33 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 35 H 0.40 4.31 8.56 -40.82 -0.35 3.96 16 36 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.73 337.68 -8.35 -42.08 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -5.95 Total: 13.17 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.61 Total: -8.07 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: 0.09 Total: -61.55 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.06 Total: -8.34 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.73 -8.35 -42.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753961481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.962 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds