Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47128 * 2 1 4 4 C 1.53004 * 109.46881 * 239.99500 * 2 1 3 5 5 C 1.53004 * 109.46760 * 174.99756 * 4 2 1 6 6 N 1.46503 * 109.46947 * 180.02562 * 5 4 2 7 7 C 1.36935 * 120.00153 * 179.97438 * 6 5 4 8 8 H 1.07994 * 119.99677 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00076 * 179.97438 * 7 6 5 10 10 N 1.31619 * 120.00028 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00128 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47041 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47316 * 119.99899 * 11 9 7 14 14 H 1.48499 * 109.47360 * 240.00304 * 11 9 7 15 15 N 1.46502 * 109.47308 * 119.99978 * 2 1 3 16 16 C 1.34772 * 119.99938 * 275.00283 * 15 2 1 17 17 O 1.21781 * 119.99975 * 359.97438 * 16 15 2 18 18 C 1.41522 * 120.00226 * 179.72456 * 16 15 2 19 19 C 1.35616 * 120.00213 * 186.84957 * 18 16 15 20 20 C 1.41670 * 119.99655 * 8.11040 * 19 18 16 21 21 C 1.38286 * 126.25706 * 217.69263 * 20 19 18 22 22 C 1.39787 * 107.07665 * 179.85109 * 21 20 19 23 23 C 1.35498 * 107.90719 * 0.42478 * 22 21 20 24 24 N 1.35750 * 108.91143 * 359.73501 * 23 22 21 25 25 H 0.97010 * 125.68567 * 179.97438 * 24 23 22 26 26 H 1.09005 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47219 * 299.99888 * 1 2 3 28 28 H 1.08996 * 109.47117 * 60.00296 * 1 2 3 29 29 H 1.08991 * 109.47672 * 295.00120 * 4 2 1 30 30 H 1.09008 * 109.46741 * 55.00686 * 4 2 1 31 31 H 1.08996 * 109.47610 * 300.00230 * 5 4 2 32 32 H 1.08996 * 109.47000 * 60.00675 * 5 4 2 33 33 H 0.97002 * 119.99817 * 0.02562 * 6 5 4 34 34 H 0.97002 * 119.99818 * 180.02562 * 10 9 7 35 35 H 0.97003 * 120.00327 * 94.99786 * 15 2 1 36 36 H 1.08004 * 119.99357 * 6.84663 * 18 16 15 37 37 H 1.08003 * 119.99341 * 188.11252 * 19 18 16 38 38 H 1.08000 * 126.45684 * 359.97438 * 21 20 19 39 39 H 1.08002 * 126.04284 * 180.13785 * 22 21 20 40 40 H 1.08004 * 125.54388 * 179.71996 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3036 -2.5102 7 6 5.3950 -1.3394 -2.7802 8 1 6.0935 -0.8592 -2.1110 9 6 5.8577 -1.9938 -3.9136 10 7 5.0065 -2.5795 -4.7289 11 14 7.6884 -2.0433 -4.2817 12 1 8.4269 -1.3161 -3.2181 13 1 8.1466 -3.4551 -4.3250 14 1 7.9471 -1.3983 -5.5940 15 7 2.0184 -0.6906 1.1962 16 6 2.1470 -0.0183 2.3571 17 8 1.8578 1.1634 2.4117 18 6 2.6133 -0.6868 3.5141 19 6 2.6117 -0.0506 4.7118 20 6 1.9879 1.2148 4.8408 21 6 2.4382 2.2743 5.6069 22 6 1.5249 3.3193 5.4396 23 6 0.5496 2.8902 4.6025 24 7 0.8192 1.6125 4.2312 25 1 0.2782 1.0701 3.6360 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7516 -1.7716 -1.2056 30 1 1.6053 -0.2618 -2.1370 31 1 3.8532 0.4369 -1.3574 32 1 3.9994 -1.0729 -0.4260 33 1 3.4257 -1.7346 -3.1114 34 1 5.3299 -3.0371 -5.5207 35 1 2.2491 -1.6318 1.1527 36 1 2.9703 -1.7036 3.4431 37 1 3.0860 -0.5087 5.5671 38 1 3.3288 2.2918 6.2176 39 1 1.5836 4.2944 5.9001 40 1 -0.3035 3.4702 4.2829 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753961481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 29.642266 kcal Electronic energy + Delta-G solvation = -20957.571635 eV Core-core repulsion = 17773.531429 eV Total energy + Delta-G solvation = -3184.040205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13249 -40.62118 -37.94656 -36.14416 -34.61422 -33.61550 -32.17974 -31.67913 -29.49172 -28.96876 -25.97807 -24.94692 -23.21214 -22.08625 -21.65778 -21.14745 -20.58790 -19.32089 -18.87689 -17.65445 -16.82290 -16.53676 -15.86821 -15.73754 -15.33783 -15.26401 -15.16813 -14.73231 -14.60526 -14.33390 -14.07084 -13.72990 -13.58092 -13.11649 -13.03857 -12.93077 -12.88558 -12.78522 -12.40740 -12.24539 -12.02514 -11.94838 -11.65950 -10.99608 -10.87302 -10.76202 -10.06274 -9.50918 -9.04514 -8.48366 -7.99329 -5.28673 -0.16288 1.45725 1.46400 1.56774 1.74122 2.12944 2.37510 2.52988 2.54922 2.70494 3.34389 3.60708 4.03896 4.06756 4.14592 4.18972 4.37043 4.43162 4.53367 4.58266 4.63715 4.65400 4.71333 4.73547 4.85082 4.95948 5.11605 5.18847 5.21578 5.23899 5.31565 5.45337 5.45600 5.51131 5.62283 6.14347 6.23592 6.32065 6.65521 6.82321 7.29947 7.32967 8.04412 8.28869 9.24179 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026460 B = 0.003247 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.941475 B = 8620.835253 C = 9172.596850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 H 0.064 0.936 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.746 5.746 7 C -0.250 4.250 8 H 0.070 0.930 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.974 3.026 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.710 5.710 16 C 0.533 3.467 17 O -0.578 6.578 18 C -0.253 4.253 19 C 0.027 3.973 20 C -0.003 4.003 21 C -0.178 4.178 22 C -0.235 4.235 23 C 0.002 3.998 24 N -0.501 5.501 25 H 0.415 0.585 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.023 0.977 33 H 0.376 0.624 34 H 0.253 0.747 35 H 0.409 0.591 36 H 0.158 0.842 37 H 0.175 0.825 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 4.676 21.144 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.048 3.952 3 H 0.082 0.918 4 C -0.157 4.157 5 C 0.029 3.971 6 N -0.389 5.389 7 C -0.382 4.382 8 H 0.088 0.912 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.193 1.193 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.361 5.361 16 C 0.326 3.674 17 O -0.462 6.462 18 C -0.275 4.275 19 C 0.007 3.993 20 C -0.116 4.116 21 C -0.203 4.203 22 C -0.260 4.260 23 C -0.135 4.135 24 N -0.093 5.093 25 H 0.254 0.746 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.208 0.792 34 H 0.062 0.938 35 H 0.245 0.755 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.653 5.420 21.071 24.681 hybrid contribution 0.792 -0.749 -1.264 1.669 sum -10.861 4.671 19.807 23.067 Atomic orbital electron populations 1.22049 0.93488 1.02846 1.02358 1.20739 0.94820 0.96163 0.83457 0.91785 1.21898 0.94452 1.01729 0.97619 1.20737 0.93624 0.93936 0.88805 1.42570 1.04523 1.65327 1.26450 1.19632 0.85272 1.27791 1.05464 0.91171 1.25567 1.02142 1.01087 0.97719 1.69810 1.34581 1.41804 1.15584 0.85075 0.79970 0.77165 0.77558 1.19328 1.21562 1.21878 1.46110 1.66199 1.14345 1.09404 1.17691 0.77821 0.87002 0.84916 1.90885 1.52606 1.16765 1.85895 1.22226 1.09919 1.03168 0.92191 1.21206 0.90705 0.89531 0.97902 1.18417 0.93070 0.97428 1.02665 1.21624 1.01605 0.93712 1.03394 1.21009 0.97749 1.00910 1.06284 1.22351 1.02961 0.86100 1.02131 1.42312 1.19623 1.12398 1.34952 0.74591 0.91217 0.92808 0.90937 0.90332 0.90440 0.97945 0.95933 0.79231 0.93825 0.75461 0.82483 0.80732 0.83390 0.83693 0.80261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.48 71.98 0.68 -2.35 16 2 C 0.15 3.91 2.57 44.99 0.12 4.03 16 3 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 4 C -0.12 -3.54 4.87 30.60 0.15 -3.39 16 5 C 0.16 6.25 6.15 86.38 0.53 6.78 16 6 N -0.75 -38.25 5.60 -343.46 -1.92 -40.18 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 10 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 11 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 14 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 15 N -0.71 -16.26 4.52 -451.56 -2.04 -18.30 16 16 C 0.53 13.09 6.98 85.05 0.59 13.68 16 17 O -0.58 -17.45 11.28 -4.61 -0.05 -17.51 16 18 C -0.25 -4.72 9.85 22.47 0.22 -4.49 16 19 C 0.03 0.47 9.96 22.51 0.22 0.70 16 20 C 0.00 -0.08 5.37 39.08 0.21 0.13 16 21 C -0.18 -4.05 10.86 22.66 0.25 -3.80 16 22 C -0.24 -5.22 10.81 22.01 0.24 -4.98 16 23 C 0.00 0.04 11.90 83.45 0.99 1.03 16 24 N -0.50 -11.33 3.91 -187.34 -0.73 -12.06 16 25 H 0.41 8.89 7.31 -92.70 -0.68 8.21 16 26 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.02 0.90 7.75 -2.39 -0.02 0.88 16 33 H 0.38 20.12 7.67 -92.71 -0.71 19.41 16 34 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.41 8.05 8.56 -92.71 -0.79 7.25 16 36 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -71.78 337.68 1.95 -69.84 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -1.12 Total: 38.39 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: 5.51 Total: -9.79 kcal Atomic # 7 Polarization: -124.93 SS G_CDS: -4.41 Total: -129.34 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.05 Total: -17.51 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.78 1.95 -69.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753961481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.477 kcal (2) G-P(sol) polarization free energy of solvation -71.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds