Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00209 * 2 1 4 4 C 1.53006 * 109.47162 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46875 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00390 * 4.97015 * 5 4 3 7 7 N 1.34781 * 119.99348 * 184.97229 * 5 4 3 8 8 C 1.46497 * 120.00352 * 4.96481 * 7 5 4 9 9 C 1.50705 * 109.47017 * 277.10457 * 8 7 5 10 10 H 1.07996 * 119.99729 * 114.43864 * 9 8 7 11 11 C 1.37878 * 120.00000 * 294.44297 * 9 8 7 12 12 N 1.31515 * 119.99965 * 4.53923 * 11 9 8 13 13 Si 1.86802 * 119.99803 * 184.53409 * 11 9 8 14 14 H 1.48500 * 109.46838 * 90.00190 * 13 11 9 15 15 H 1.48495 * 109.47123 * 209.99760 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00692 * 13 11 9 17 17 C 1.46510 * 119.99336 * 184.96306 * 7 5 4 18 18 C 1.50694 * 109.47242 * 275.56817 * 17 7 5 19 19 C 1.38672 * 120.41858 * 269.72553 * 18 17 7 20 20 C 1.38631 * 118.41904 * 179.78058 * 19 18 17 21 21 C 1.38226 * 119.16165 * 0.51626 * 20 19 18 22 22 N 1.31859 * 120.76149 * 359.72248 * 21 20 19 23 23 C 1.31885 * 121.72662 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47011 * 59.99560 * 1 2 3 25 25 H 1.08995 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46662 * 300.00130 * 1 2 3 27 27 H 1.00897 * 110.99696 * 236.04545 * 2 1 3 28 28 H 1.09003 * 109.47357 * 60.00167 * 3 2 1 29 29 H 1.08996 * 109.47510 * 299.99934 * 3 2 1 30 30 H 1.09003 * 109.46930 * 59.99806 * 4 3 2 31 31 H 1.08993 * 109.47061 * 299.99841 * 4 3 2 32 32 H 1.09002 * 109.47288 * 157.10787 * 8 7 5 33 33 H 1.08995 * 109.47348 * 37.10872 * 8 7 5 34 34 H 0.97004 * 119.99578 * 175.00010 * 12 11 9 35 35 H 1.09000 * 109.47051 * 35.57603 * 17 7 5 36 36 H 1.09007 * 109.46525 * 155.57149 * 17 7 5 37 37 H 1.08003 * 120.79065 * 0.02562 * 19 18 17 38 38 H 1.08003 * 120.41617 * 180.21842 * 20 19 18 39 39 H 1.07999 * 119.62192 * 179.74788 * 21 20 19 40 40 H 1.07997 * 119.61944 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5250 1.3305 -0.0006 5 6 4.0650 2.7374 -0.0013 6 8 3.3056 3.6786 0.0898 7 7 5.3921 2.9496 -0.1031 8 6 6.2999 1.8209 -0.3223 9 6 6.6073 1.1600 0.9968 10 1 6.2755 0.1496 1.1848 11 6 7.3121 1.8454 1.9635 12 7 7.6385 3.1047 1.7706 13 14 7.8031 0.9852 3.5474 14 1 9.1365 0.3547 3.3753 15 1 7.8632 1.9769 4.6510 16 1 6.8000 -0.0597 3.8747 17 6 5.9268 4.3094 0.0055 18 6 5.8490 4.9885 -1.3375 19 6 6.9064 4.9019 -2.2304 20 6 6.7888 5.5387 -3.4562 21 6 5.6339 6.2428 -3.7413 22 7 4.6502 6.3078 -2.8657 23 6 4.7254 5.7104 -1.6924 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8305 -0.5261 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6461 1.8947 -0.8899 30 1 3.8741 0.8072 -0.8909 31 1 3.8748 0.8070 0.8891 32 1 7.2250 2.1807 -0.7727 33 1 5.8279 1.0992 -0.9890 34 1 8.0700 3.6078 2.4789 35 1 5.3417 4.8729 0.7322 36 1 6.9662 4.2660 0.3310 37 1 7.7989 4.3482 -1.9785 38 1 7.5913 5.4893 -4.1773 39 1 5.5360 6.7451 -4.6924 40 1 3.8991 5.7856 -1.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043599942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = -2.331387 kcal Electronic energy + Delta-G solvation = -21885.774104 eV Core-core repulsion = 18700.347417 eV Total energy + Delta-G solvation = -3185.426687 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.79248 -38.68038 -35.98019 -34.99988 -32.80955 -31.87919 -31.34232 -30.19966 -27.67795 -25.93567 -24.52059 -23.26613 -22.77817 -22.19352 -21.12024 -18.29641 -16.80546 -16.66175 -15.93678 -15.83923 -15.49374 -15.09040 -14.84050 -14.58076 -14.34625 -13.85953 -13.55500 -13.26732 -12.95561 -12.58755 -12.55228 -12.21426 -12.14672 -11.91738 -11.50473 -11.27405 -11.16830 -11.03075 -10.87298 -10.65834 -10.56688 -9.91830 -9.67085 -9.39176 -9.04302 -8.98709 -8.70761 -8.39373 -8.30204 -7.32938 -6.27381 -4.43319 1.55960 1.74018 3.16248 3.25474 3.28630 3.67701 4.03736 4.22292 4.35378 4.67227 4.88913 5.10490 5.23288 5.33971 5.46559 5.46984 5.52478 5.58447 5.63221 5.68349 5.85002 5.92705 6.01751 6.07282 6.22960 6.40061 6.49259 6.54153 6.58212 6.62530 6.91587 7.01911 7.15668 7.18935 7.23630 7.50393 7.70228 7.82208 7.96542 8.40995 8.49136 8.84529 9.30106 9.31247 10.71961 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.007997 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.768041 B = 3500.277142 C = 5836.087220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.697 5.697 3 C 0.075 3.925 4 C -0.129 4.129 5 C 0.511 3.489 6 O -0.585 6.585 7 N -0.565 5.565 8 C 0.228 3.772 9 C -0.537 4.537 10 H 0.064 0.936 11 C 0.077 3.923 12 N -0.880 5.880 13 Si 0.900 3.100 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.149 3.851 18 C -0.136 4.136 19 C -0.065 4.065 20 C -0.183 4.183 21 C 0.079 3.921 22 N -0.496 5.496 23 C 0.113 3.887 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.338 0.662 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.267 0.733 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.145 0.855 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -0.676 -6.602 7.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.327 5.327 3 C -0.054 4.054 4 C -0.169 4.169 5 C 0.299 3.701 6 O -0.468 6.468 7 N -0.293 5.293 8 C 0.109 3.891 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.127 4.127 12 N -0.517 5.517 13 Si 0.727 3.273 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.197 1.197 17 C 0.026 3.974 18 C -0.140 4.140 19 C -0.091 4.091 20 C -0.203 4.203 21 C -0.078 4.078 22 N -0.204 5.204 23 C -0.044 4.044 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.163 0.837 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.062 0.306 -6.014 7.264 hybrid contribution 0.940 -0.643 0.166 1.151 sum -3.122 -0.337 -5.848 6.638 Atomic orbital electron populations 1.22151 0.88181 1.01314 1.00358 1.60395 1.07404 1.15121 1.49780 1.21721 0.94290 0.88049 1.01363 1.21525 0.94603 0.95913 1.04878 1.20363 0.82854 0.90525 0.76338 1.90536 1.57878 1.44866 1.53489 1.48625 1.05515 1.07741 1.67466 1.19402 0.89586 0.84296 0.95810 1.21533 1.34551 1.00568 1.00935 0.91830 1.25003 0.94059 0.94795 0.98837 1.69466 1.40910 1.08096 1.33277 0.86467 0.79035 0.79494 0.82284 1.20433 1.21128 1.19672 1.20876 1.05334 0.82048 0.89183 1.21900 0.94327 0.97915 0.99810 1.21602 0.98671 0.96164 0.92673 1.22053 0.99634 1.00560 0.98085 1.22605 0.89840 0.97087 0.98317 1.67683 1.29708 1.19829 1.03216 1.22980 0.96911 0.91859 0.92652 0.96304 0.91758 0.91782 0.84517 0.90434 0.95175 0.90390 0.87403 0.94097 0.95453 0.92266 0.91860 0.83770 0.84871 0.85561 0.83737 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.70 60.07 0.64 1.00 16 2 N -0.70 -9.93 6.86 -121.13 -0.83 -10.76 16 3 C 0.07 1.25 4.99 -3.82 -0.02 1.23 16 4 C -0.13 -2.37 4.69 -27.88 -0.13 -2.50 16 5 C 0.51 11.07 7.54 -10.98 -0.08 10.98 16 6 O -0.58 -13.65 14.21 5.56 0.08 -13.57 16 7 N -0.57 -12.31 2.36 -176.43 -0.42 -12.73 16 8 C 0.23 4.98 5.17 -5.19 -0.03 4.95 16 9 C -0.54 -12.82 8.62 -34.44 -0.30 -13.12 16 10 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 11 C 0.08 1.88 5.43 -17.82 -0.10 1.78 16 12 N -0.88 -21.60 9.66 55.43 0.54 -21.07 16 13 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 C 0.15 3.18 4.66 -5.19 -0.02 3.16 16 18 C -0.14 -2.62 5.43 -104.49 -0.57 -3.18 16 19 C -0.06 -1.09 9.86 -39.28 -0.39 -1.48 16 20 C -0.18 -2.69 10.11 -39.44 -0.40 -3.09 16 21 C 0.08 1.22 11.18 -17.54 -0.20 1.02 16 22 N -0.50 -9.16 10.36 -13.25 -0.14 -9.30 16 23 C 0.11 2.20 10.37 -17.55 -0.18 2.02 16 24 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.34 4.27 8.81 -39.29 -0.35 3.92 16 28 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.32 7.05 -51.93 -0.37 0.95 16 31 H 0.11 2.13 7.63 -51.93 -0.40 1.73 16 32 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 33 H 0.03 0.55 6.66 -51.93 -0.35 0.20 16 34 H 0.27 6.38 8.32 -40.82 -0.34 6.04 16 35 H 0.06 1.44 7.62 -51.93 -0.40 1.04 16 36 H 0.15 3.26 5.19 -51.92 -0.27 2.99 16 37 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 38 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.16 3.23 7.06 -52.49 -0.37 2.86 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -26.96 332.02 -8.38 -35.34 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.83 Total: 9.80 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.77 Total: 2.77 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: -0.85 Total: -53.85 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.96 -8.38 -35.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043599942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.009 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds