Wall clock time and date at job start Mon Mar 30 2020 01:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00209 * 2 1 4 4 C 1.53006 * 109.47162 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46875 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00390 * 4.97015 * 5 4 3 7 7 N 1.34781 * 119.99348 * 184.97229 * 5 4 3 8 8 C 1.46497 * 120.00352 * 4.96481 * 7 5 4 9 9 C 1.50705 * 109.47017 * 277.10457 * 8 7 5 10 10 H 1.07996 * 119.99729 * 114.43864 * 9 8 7 11 11 C 1.37878 * 120.00000 * 294.44297 * 9 8 7 12 12 N 1.31515 * 119.99965 * 4.53923 * 11 9 8 13 13 Si 1.86802 * 119.99803 * 184.53409 * 11 9 8 14 14 H 1.48500 * 109.46838 * 90.00190 * 13 11 9 15 15 H 1.48495 * 109.47123 * 209.99760 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00692 * 13 11 9 17 17 C 1.46510 * 119.99336 * 184.96306 * 7 5 4 18 18 C 1.50694 * 109.47242 * 275.56817 * 17 7 5 19 19 C 1.38672 * 120.41858 * 269.72553 * 18 17 7 20 20 C 1.38631 * 118.41904 * 179.78058 * 19 18 17 21 21 C 1.38226 * 119.16165 * 0.51626 * 20 19 18 22 22 N 1.31859 * 120.76149 * 359.72248 * 21 20 19 23 23 C 1.31885 * 121.72662 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47011 * 59.99560 * 1 2 3 25 25 H 1.08995 * 109.47081 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46662 * 300.00130 * 1 2 3 27 27 H 1.00897 * 110.99696 * 236.04545 * 2 1 3 28 28 H 1.09003 * 109.47357 * 60.00167 * 3 2 1 29 29 H 1.08996 * 109.47510 * 299.99934 * 3 2 1 30 30 H 1.09003 * 109.46930 * 59.99806 * 4 3 2 31 31 H 1.08993 * 109.47061 * 299.99841 * 4 3 2 32 32 H 1.09002 * 109.47288 * 157.10787 * 8 7 5 33 33 H 1.08995 * 109.47348 * 37.10872 * 8 7 5 34 34 H 0.97004 * 119.99578 * 175.00010 * 12 11 9 35 35 H 1.09000 * 109.47051 * 35.57603 * 17 7 5 36 36 H 1.09007 * 109.46525 * 155.57149 * 17 7 5 37 37 H 1.08003 * 120.79065 * 0.02562 * 19 18 17 38 38 H 1.08003 * 120.41617 * 180.21842 * 20 19 18 39 39 H 1.07999 * 119.62192 * 179.74788 * 21 20 19 40 40 H 1.07997 * 119.61944 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5250 1.3305 -0.0006 5 6 4.0650 2.7374 -0.0013 6 8 3.3056 3.6786 0.0898 7 7 5.3921 2.9496 -0.1031 8 6 6.2999 1.8209 -0.3223 9 6 6.6073 1.1600 0.9968 10 1 6.2755 0.1496 1.1848 11 6 7.3121 1.8454 1.9635 12 7 7.6385 3.1047 1.7706 13 14 7.8031 0.9852 3.5474 14 1 9.1365 0.3547 3.3753 15 1 7.8632 1.9769 4.6510 16 1 6.8000 -0.0597 3.8747 17 6 5.9268 4.3094 0.0055 18 6 5.8490 4.9885 -1.3375 19 6 6.9064 4.9019 -2.2304 20 6 6.7888 5.5387 -3.4562 21 6 5.6339 6.2428 -3.7413 22 7 4.6502 6.3078 -2.8657 23 6 4.7254 5.7104 -1.6924 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 1.8305 -0.5261 -0.7814 28 1 1.6460 1.8947 0.8900 29 1 1.6461 1.8947 -0.8899 30 1 3.8741 0.8072 -0.8909 31 1 3.8748 0.8070 0.8891 32 1 7.2250 2.1807 -0.7727 33 1 5.8279 1.0992 -0.9890 34 1 8.0700 3.6078 2.4789 35 1 5.3417 4.8729 0.7322 36 1 6.9662 4.2660 0.3310 37 1 7.7989 4.3482 -1.9785 38 1 7.5913 5.4893 -4.1773 39 1 5.5360 6.7451 -4.6924 40 1 3.8991 5.7856 -1.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043599942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:55 Heat of formation + Delta-G solvation = -19.094922 kcal Electronic energy + Delta-G solvation = -21886.501026 eV Core-core repulsion = 18700.347417 eV Total energy + Delta-G solvation = -3186.153608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24570 -40.28306 -37.28174 -36.68650 -34.47985 -33.47285 -32.71838 -31.57025 -29.41616 -27.41752 -25.81443 -24.89431 -24.26673 -23.54092 -22.54845 -19.99647 -18.53963 -18.05366 -17.42518 -17.19745 -17.01274 -16.69519 -16.55280 -16.12326 -15.67922 -15.15512 -14.90056 -14.61199 -14.42061 -14.16254 -13.93266 -13.77366 -13.71299 -13.55022 -12.88210 -12.78115 -12.63072 -12.58081 -12.44271 -12.23761 -12.12919 -11.68253 -11.45949 -10.87379 -10.64588 -10.49950 -10.36900 -9.83996 -9.44871 -9.07137 -8.12089 -6.32747 0.21855 0.39108 1.43057 1.48415 1.54954 1.96152 2.42054 2.51623 3.00561 3.13881 3.47541 3.60487 4.01118 4.04896 4.07757 4.13530 4.18155 4.24871 4.29630 4.53981 4.57814 4.64372 4.67494 4.84230 4.90014 4.93234 5.00996 5.04795 5.10807 5.19595 5.27421 5.38956 5.53055 5.84163 5.87909 5.96492 6.07376 6.13982 6.46288 6.65743 7.05584 7.09524 7.43116 7.58291 8.84782 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.007997 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.768041 B = 3500.277142 C = 5836.087220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.701 5.701 3 C 0.088 3.912 4 C -0.118 4.118 5 C 0.499 3.501 6 O -0.608 6.608 7 N -0.568 5.568 8 C 0.233 3.767 9 C -0.548 4.548 10 H 0.063 0.937 11 C 0.037 3.963 12 N -0.894 5.894 13 Si 0.950 3.050 14 H -0.272 1.272 15 H -0.292 1.292 16 H -0.273 1.273 17 C 0.160 3.840 18 C -0.152 4.152 19 C -0.069 4.069 20 C -0.165 4.165 21 C 0.081 3.919 22 N -0.515 5.515 23 C 0.097 3.903 24 H 0.024 0.976 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.349 0.651 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.034 0.966 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 -1.547 -8.443 8.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.333 5.333 3 C -0.041 4.041 4 C -0.158 4.158 5 C 0.288 3.712 6 O -0.492 6.492 7 N -0.295 5.295 8 C 0.114 3.886 9 C -0.587 4.587 10 H 0.081 0.919 11 C -0.165 4.165 12 N -0.532 5.532 13 Si 0.777 3.223 14 H -0.198 1.198 15 H -0.218 1.218 16 H -0.198 1.198 17 C 0.036 3.964 18 C -0.155 4.155 19 C -0.096 4.096 20 C -0.184 4.184 21 C -0.076 4.076 22 N -0.224 5.224 23 C -0.059 4.059 24 H 0.043 0.957 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.168 0.832 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.188 0.812 39 H 0.203 0.797 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.587 -0.584 -7.857 8.657 hybrid contribution 0.805 -0.337 0.653 1.090 sum -2.782 -0.921 -7.203 7.777 Atomic orbital electron populations 1.22234 0.86550 1.02894 1.00412 1.60354 1.08986 1.13386 1.50557 1.21470 0.93080 0.89453 1.00143 1.21435 0.95666 0.93597 1.05058 1.20967 0.82659 0.91708 0.75868 1.90523 1.58309 1.45967 1.54434 1.48625 1.05716 1.07923 1.67282 1.19337 0.89481 0.84426 0.95374 1.21758 1.34463 1.00682 1.01757 0.91869 1.25594 0.94409 0.95355 1.01133 1.69591 1.41303 1.08676 1.33674 0.85681 0.78792 0.78346 0.79476 1.19797 1.21841 1.19819 1.20594 1.03686 0.81947 0.90202 1.21628 0.95538 0.98976 0.99341 1.21760 0.98026 0.96515 0.93302 1.22470 1.00311 0.98179 0.97463 1.23341 0.89074 0.96329 0.98897 1.67675 1.31337 1.20217 1.03174 1.22630 0.96626 0.93323 0.93313 0.95703 0.89394 0.92284 0.83236 0.92383 0.95743 0.88520 0.88535 0.94834 0.93562 0.92524 0.94697 0.85007 0.84223 0.81169 0.79664 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.70 127.69 1.37 1.99 16 2 N -0.70 -19.00 6.86 -537.16 -3.68 -22.69 16 3 C 0.09 2.94 4.99 86.31 0.43 3.37 16 4 C -0.12 -4.30 4.69 29.85 0.14 -4.16 16 5 C 0.50 22.08 7.54 87.66 0.66 22.74 16 6 O -0.61 -29.54 14.21 -3.03 -0.04 -29.58 16 7 N -0.57 -25.21 2.36 -830.48 -1.96 -27.17 16 8 C 0.23 10.13 5.17 85.64 0.44 10.57 16 9 C -0.55 -26.04 8.62 25.60 0.22 -25.81 16 10 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 11 C 0.04 1.82 5.43 84.65 0.46 2.28 16 12 N -0.89 -44.57 9.66 21.45 0.21 -44.36 16 13 Si 0.95 40.04 29.54 68.60 2.03 42.07 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 15 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 C 0.16 7.08 4.66 85.63 0.40 7.48 16 18 C -0.15 -5.91 5.43 -19.78 -0.11 -6.02 16 19 C -0.07 -2.26 9.86 22.47 0.22 -2.03 16 20 C -0.16 -4.26 10.11 22.36 0.23 -4.03 16 21 C 0.08 2.25 11.18 84.69 0.95 3.19 16 22 N -0.51 -18.58 10.36 -195.84 -2.03 -20.61 16 23 C 0.10 3.89 10.37 84.67 0.88 4.77 16 24 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.35 8.11 8.81 -89.70 -0.79 7.32 16 28 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 3.14 7.05 -2.39 -0.02 3.12 16 31 H 0.10 3.79 7.63 -2.39 -0.02 3.77 16 32 H 0.03 1.50 8.02 -2.39 -0.02 1.48 16 33 H 0.05 1.80 6.66 -2.39 -0.02 1.78 16 34 H 0.27 12.88 8.32 -92.71 -0.77 12.11 16 35 H 0.03 1.69 7.62 -2.39 -0.02 1.67 16 36 H 0.13 6.18 5.19 -2.38 -0.01 6.17 16 37 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.13 5.89 7.06 -2.91 -0.02 5.87 16 Total: -1.00 -58.84 332.02 1.05 -57.79 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.25 Total: 30.21 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.29 Total: 14.33 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -7.46 Total: -114.82 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.04 Total: -29.58 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -58.84 1.05 -57.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043599942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.692 kcal (2) G-P(sol) polarization free energy of solvation -58.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds