Wall clock time and date at job start Mon Mar 30 2020 01:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42905 * 114.00031 * 2 1 4 4 C 1.52996 * 109.47285 * 184.73469 * 3 2 1 5 5 N 1.46903 * 109.46871 * 68.79309 * 4 3 2 6 6 C 1.46905 * 110.99800 * 286.52005 * 5 4 3 7 7 C 1.50705 * 109.47305 * 303.39836 * 6 5 4 8 8 H 1.08010 * 119.99618 * 354.92930 * 7 6 5 9 9 C 1.37867 * 120.00204 * 174.92556 * 7 6 5 10 10 N 1.31520 * 119.99908 * 5.15402 * 9 7 6 11 11 Si 1.86802 * 120.00369 * 185.15706 * 9 7 6 12 12 H 1.48496 * 109.47442 * 64.99470 * 11 9 7 13 13 H 1.48492 * 109.47446 * 185.00219 * 11 9 7 14 14 H 1.48505 * 109.46509 * 305.00032 * 11 9 7 15 15 C 1.38549 * 110.99939 * 162.57083 * 5 4 3 16 16 N 1.33025 * 120.56214 * 20.72794 * 15 5 4 17 17 C 1.31756 * 120.61435 * 180.27541 * 16 15 5 18 18 N 1.31757 * 121.89913 * 359.47569 * 17 16 15 19 19 C 1.32687 * 121.01854 * 0.25271 * 18 17 16 20 20 C 1.37940 * 119.04686 * 359.97438 * 19 18 17 21 21 C 1.51052 * 109.97122 * 180.02562 * 20 19 18 22 22 C 1.54427 * 105.12398 * 17.00678 * 21 20 19 23 23 C 1.51195 * 131.19185 * 179.97438 * 19 18 17 24 24 H 1.09001 * 109.47484 * 64.94117 * 1 2 3 25 25 H 1.09002 * 109.47173 * 184.94450 * 1 2 3 26 26 H 1.08996 * 109.47435 * 304.93993 * 1 2 3 27 27 H 1.09000 * 109.47089 * 64.73731 * 3 2 1 28 28 H 1.09001 * 109.46763 * 304.73386 * 3 2 1 29 29 H 1.08997 * 109.47318 * 308.79022 * 4 3 2 30 30 H 1.08996 * 109.46953 * 188.78789 * 4 3 2 31 31 H 1.08993 * 109.46950 * 63.40148 * 6 5 4 32 32 H 1.09000 * 109.46926 * 183.40064 * 6 5 4 33 33 H 0.96995 * 119.99639 * 180.02562 * 10 9 7 34 34 H 1.07993 * 119.04262 * 179.75200 * 17 16 15 35 35 H 1.08996 * 110.31302 * 135.92212 * 21 20 19 36 36 H 1.09004 * 110.30948 * 257.99768 * 21 20 19 37 37 H 1.08998 * 110.82220 * 92.17325 * 22 21 20 38 38 H 1.09006 * 110.82499 * 215.53315 * 22 21 20 39 39 H 1.09004 * 110.30436 * 281.87775 * 23 19 18 40 40 H 1.09000 * 110.30377 * 44.03311 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5309 1.1867 -0.1191 5 7 3.8801 0.6928 -1.4578 6 6 3.5647 -0.7358 -1.5907 7 6 4.2806 -1.5105 -0.5144 8 1 4.9708 -1.0061 0.1457 9 6 4.0545 -2.8631 -0.3724 10 7 3.2935 -3.4970 -1.2377 11 14 4.8289 -3.7954 1.0491 12 1 4.2695 -3.2972 2.3313 13 1 4.5342 -5.2442 0.9101 14 1 6.2991 -3.5859 1.0359 15 6 5.2137 0.9356 -1.7443 16 7 6.0874 1.1524 -0.7648 17 6 7.3548 1.3886 -1.0364 18 7 7.8096 1.4104 -2.2728 19 6 7.0006 1.1980 -3.3028 20 6 5.6645 0.9511 -3.0651 21 6 4.9384 0.7394 -4.3727 22 6 6.0480 0.4544 -5.4082 23 6 7.2688 1.1706 -4.7905 24 1 -0.3634 0.4353 -0.9309 25 1 -0.3633 -1.0239 0.0886 26 1 -0.3634 0.5885 0.8424 27 1 1.7573 1.8158 0.9294 28 1 1.6230 1.8755 -0.8446 29 1 3.9009 0.4902 0.6332 30 1 3.9850 2.1652 0.0371 31 1 2.4893 -0.8814 -1.4889 32 1 3.8883 -1.0898 -2.5695 33 1 3.1342 -4.4486 -1.1375 34 1 8.0414 1.5652 -0.2217 35 1 4.2635 -0.1131 -4.2970 36 1 4.3840 1.6369 -4.6472 37 1 6.2304 -0.6166 -5.4959 38 1 5.7930 0.8831 -6.3774 39 1 7.3485 2.1858 -5.1793 40 1 8.1809 0.6118 -5.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:10 Heat of formation + Delta-G solvation = -4.583004 kcal Electronic energy + Delta-G solvation = -22508.391117 eV Core-core repulsion = 19322.866793 eV Total energy + Delta-G solvation = -3185.524324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.31784 -39.45539 -37.94761 -37.49499 -34.72371 -33.41455 -31.38771 -30.22844 -29.05688 -28.33003 -26.94346 -25.18965 -23.99828 -23.67379 -22.06825 -21.19301 -18.87573 -18.60673 -17.81730 -17.30224 -16.96175 -16.65774 -16.38255 -15.63120 -15.57701 -15.41288 -15.18383 -14.73645 -14.45269 -14.02704 -13.83535 -13.39810 -13.22730 -13.00364 -12.90868 -12.72183 -12.59053 -12.42975 -12.19183 -12.10024 -12.03944 -11.92077 -11.63696 -11.55049 -11.12415 -10.61338 -10.32885 -10.08996 -10.03559 -9.21212 -8.14958 -6.23852 0.12483 0.23388 1.32212 1.33782 1.41062 2.37916 2.73096 2.96364 3.04604 3.11723 3.16610 3.38358 3.74633 3.87202 4.06345 4.19256 4.24188 4.40956 4.48673 4.54711 4.58549 4.63984 4.65393 4.79095 4.82499 4.85078 4.91476 4.95717 5.08279 5.11846 5.18764 5.29754 5.35978 5.48318 5.56474 5.76965 5.85234 6.08923 6.31383 6.42321 6.55263 6.88302 7.29200 7.41937 8.91161 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.007375 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.826390 B = 3795.919558 C = 4471.646654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.398 6.398 3 C 0.072 3.928 4 C 0.070 3.930 5 N -0.480 5.480 6 C 0.216 3.784 7 C -0.540 4.540 8 H 0.051 0.949 9 C 0.023 3.977 10 N -0.917 5.917 11 Si 0.943 3.057 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.282 1.282 15 C 0.368 3.632 16 N -0.570 5.570 17 C 0.294 3.706 18 N -0.551 5.551 19 C 0.153 3.847 20 C -0.222 4.222 21 C -0.064 4.064 22 C -0.108 4.108 23 C -0.061 4.061 24 H 0.045 0.955 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.217 0.783 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.067 0.933 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 11.232 -5.204 12.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.005 4.005 4 C -0.058 4.058 5 N -0.199 5.199 6 C 0.093 3.907 7 C -0.579 4.579 8 H 0.069 0.931 9 C -0.177 4.177 10 N -0.557 5.557 11 Si 0.769 3.231 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.207 1.207 15 C 0.130 3.870 16 N -0.289 5.289 17 C 0.005 3.995 18 N -0.267 5.267 19 C 0.009 3.991 20 C -0.228 4.228 21 C -0.102 4.102 22 C -0.146 4.146 23 C -0.099 4.099 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.229 11.278 -4.825 12.328 hybrid contribution -0.066 -1.234 1.164 1.698 sum 1.163 10.043 -3.661 10.753 Atomic orbital electron populations 1.22779 0.80957 1.02511 1.00489 1.88239 1.20283 1.28052 1.95141 1.22552 0.92400 0.84907 1.00593 1.21953 0.94721 0.99625 0.89491 1.60008 1.11616 1.19964 1.28280 1.19649 0.98171 0.78335 0.94524 1.21790 1.25044 0.94192 1.16829 0.93060 1.25510 0.95817 0.98392 0.97977 1.70027 1.39532 1.09688 1.36467 0.85854 0.78481 0.77855 0.80890 1.19797 1.20423 1.20741 1.20108 0.89553 0.88247 0.89076 1.68645 1.04957 1.18333 1.36991 1.25154 0.90072 0.90892 0.93381 1.67717 1.40076 1.18978 0.99948 1.22755 0.89107 0.89665 0.97592 1.21992 0.98513 1.06471 0.95858 1.20846 0.98010 1.02281 0.89109 1.22388 0.92301 1.01012 0.98885 1.21133 1.00445 1.03850 0.84434 0.93596 0.90720 0.92577 0.91100 0.92383 0.93700 0.89801 0.92379 0.98105 0.92902 0.76675 0.92395 0.88689 0.91394 0.86254 0.86463 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -16.41 7.91 -148.98 -1.18 -17.59 16 3 C 0.07 2.52 6.21 71.98 0.45 2.97 16 4 C 0.07 2.84 4.57 86.30 0.39 3.23 16 5 N -0.48 -21.33 4.63 -705.64 -3.27 -24.60 16 6 C 0.22 11.39 4.63 85.56 0.40 11.78 16 7 C -0.54 -30.88 7.55 25.60 0.19 -30.69 16 8 H 0.05 3.03 6.07 -2.91 -0.02 3.01 16 9 C 0.02 1.31 5.45 84.65 0.46 1.77 16 10 N -0.92 -54.88 13.29 21.44 0.29 -54.59 16 11 Si 0.94 46.41 29.54 68.60 2.03 48.44 16 12 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 15 C 0.37 15.96 5.16 133.14 0.69 16.64 16 16 N -0.57 -24.10 8.54 -197.65 -1.69 -25.79 16 17 C 0.29 10.77 12.28 180.91 2.22 12.99 16 18 N -0.55 -19.85 10.44 -187.91 -1.96 -21.81 16 19 C 0.15 5.24 7.37 42.52 0.31 5.55 16 20 C -0.22 -8.45 5.81 -19.50 -0.11 -8.56 16 21 C -0.06 -1.98 6.68 30.44 0.20 -1.78 16 22 C -0.11 -2.42 7.09 31.56 0.22 -2.20 16 23 C -0.06 -1.41 6.77 30.49 0.21 -1.21 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 2.14 6.00 -2.39 -0.01 2.13 16 30 H 0.08 3.12 7.66 -2.39 -0.02 3.10 16 31 H 0.06 3.27 5.71 -2.39 -0.01 3.25 16 32 H 0.00 0.05 6.37 -2.39 -0.02 0.04 16 33 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.22 6.14 8.06 -2.91 -0.02 6.12 16 35 H 0.06 2.10 6.76 -2.39 -0.02 2.08 16 36 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.93 322.62 2.14 -68.80 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.04 Total: 14.51 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: 6.88 Total: 12.65 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.63 Total: -126.80 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.18 Total: -17.59 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -70.93 2.14 -68.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.213 kcal (2) G-P(sol) polarization free energy of solvation -70.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds