Wall clock time and date at job start Mon Mar 30 2020 02:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00142 * 2 1 4 4 H 1.48505 * 109.47170 * 270.00374 * 3 2 1 5 5 H 1.48503 * 109.47267 * 30.00236 * 3 2 1 6 6 H 1.48495 * 109.47152 * 150.00312 * 3 2 1 7 7 C 1.38950 * 120.00154 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00569 * 203.44202 * 7 2 1 9 9 N 1.37102 * 119.99463 * 23.44376 * 7 2 1 10 10 C 1.34773 * 120.00162 * 43.58451 * 9 7 2 11 11 O 1.21289 * 120.00367 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99897 * 179.97438 * 10 9 7 13 13 H 1.08999 * 115.55682 * 34.28310 * 12 10 9 14 14 C 1.53082 * 117.51249 * 248.49900 * 12 10 9 15 15 C 1.52558 * 117.50662 * 179.97438 * 12 10 9 16 16 C 1.53868 * 120.82687 * 357.25018 * 15 12 10 17 17 C 1.54984 * 104.06450 * 192.36626 * 16 15 12 18 18 C 1.54925 * 102.81957 * 37.56688 * 17 16 15 19 19 C 1.53488 * 121.08543 * 217.88135 * 15 12 10 20 20 C 1.46500 * 119.99778 * 223.57708 * 9 7 2 21 21 C 1.54265 * 110.03308 * 62.56740 * 20 9 7 22 22 C 1.54890 * 104.19820 * 217.10412 * 21 20 9 23 23 C 1.54889 * 102.74551 * 37.94295 * 22 21 20 24 24 C 1.53878 * 110.03583 * 305.39811 * 20 9 7 25 25 H 0.96992 * 119.99874 * 185.70854 * 1 2 3 26 26 H 1.09005 * 117.51212 * 359.97438 * 14 12 10 27 27 H 1.09000 * 117.51724 * 145.08876 * 14 12 10 28 28 H 1.08999 * 110.51016 * 311.01116 * 16 15 12 29 29 H 1.09004 * 110.50767 * 73.72482 * 16 15 12 30 30 H 1.09006 * 110.74433 * 279.23455 * 17 16 15 31 31 H 1.09000 * 110.89913 * 155.96826 * 17 16 15 32 32 H 1.09001 * 110.48244 * 203.59414 * 18 17 16 33 33 H 1.08998 * 110.47919 * 80.96744 * 18 17 16 34 34 H 1.08992 * 110.07276 * 263.30679 * 19 15 12 35 35 H 1.09003 * 110.06499 * 24.78268 * 19 15 12 36 36 H 1.09000 * 110.01908 * 184.00608 * 20 9 7 37 37 H 1.09001 * 110.48419 * 335.78410 * 21 20 9 38 38 H 1.09001 * 110.48761 * 98.42410 * 21 20 9 39 39 H 1.08995 * 110.75433 * 279.62383 * 22 21 20 40 40 H 1.09000 * 110.75629 * 156.25304 * 22 21 20 41 41 H 1.09005 * 110.48207 * 203.38274 * 23 22 21 42 42 H 1.08993 * 110.49084 * 80.73661 * 23 22 21 43 43 H 1.08998 * 110.03362 * 238.57092 * 24 20 9 44 44 H 1.09000 * 110.03009 * 359.95674 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0220 -1.2422 0.3715 9 7 1.4082 -2.3414 -0.4735 10 6 0.6883 -2.3001 -1.6120 11 8 0.5713 -1.2560 -2.2181 12 6 0.0285 -3.5512 -2.1321 13 1 -0.3369 -4.2411 -1.3715 14 6 0.5762 -4.1528 -3.4289 15 6 -0.7731 -3.4396 -3.4253 16 6 -0.9492 -2.0828 -4.1293 17 6 -2.0583 -2.3446 -5.1797 18 6 -3.0185 -3.3046 -4.4337 19 6 -2.0811 -4.2196 -3.6167 20 6 1.5491 -3.6024 0.2588 21 6 0.9175 -3.4731 1.6603 22 6 1.8577 -4.2935 2.5779 23 6 3.2599 -3.9764 2.0015 24 6 3.0385 -3.9225 0.4757 25 1 -0.4849 -0.8358 0.0836 26 1 1.4134 -3.6433 -3.9060 27 1 0.5714 -5.2388 -3.5216 28 1 -1.2692 -1.3219 -3.4174 29 1 -0.0224 -1.7835 -4.6189 30 1 -1.6445 -2.8246 -6.0666 31 1 -2.5680 -1.4186 -5.4459 32 1 -3.5996 -3.8916 -5.1450 33 1 -3.6783 -2.7449 -3.7708 34 1 -1.8896 -5.1428 -4.1635 35 1 -2.5275 -4.4446 -2.6481 36 1 1.0702 -4.4105 -0.2941 37 1 0.8943 -2.4292 1.9734 38 1 -0.0868 -3.8966 1.6667 39 1 1.6400 -5.3587 2.5005 40 1 1.7797 -3.9562 3.6115 41 1 3.9651 -4.7674 2.2568 42 1 3.6151 -3.0139 2.3696 43 1 3.2822 -4.8863 0.0287 44 1 3.6565 -3.1400 0.0355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075091891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:49 Heat of formation + Delta-G solvation = -23.005264 kcal Electronic energy + Delta-G solvation = -23112.003909 eV Core-core repulsion = 20029.221079 eV Total energy + Delta-G solvation = -3082.782830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.62241 -38.15152 -36.47885 -33.82685 -33.21225 -31.26841 -28.31377 -28.13040 -26.76909 -25.77446 -24.55645 -22.50570 -20.37390 -20.16056 -19.89738 -19.38884 -18.02357 -16.59473 -16.28609 -15.16432 -15.11543 -14.63332 -14.28613 -13.79598 -13.68103 -13.63067 -13.11715 -12.84688 -12.65072 -12.47722 -11.96225 -11.57978 -11.29553 -11.00899 -10.95872 -10.84539 -10.65032 -10.60994 -10.58785 -10.52942 -10.46102 -10.22719 -10.18170 -10.08788 -10.05160 -9.63190 -9.51645 -9.14157 -8.54840 -7.91191 -7.29162 -6.29190 -3.77924 3.46747 3.56283 3.66259 3.78286 4.38868 4.49322 4.70791 4.93987 5.06341 5.17055 5.19143 5.25890 5.33435 5.37928 5.51461 5.57048 5.66166 5.82401 5.86420 5.92904 5.95988 6.04159 6.05896 6.09750 6.11266 6.14431 6.18861 6.23084 6.28351 6.32261 6.39595 6.41360 6.47280 6.52940 6.55910 6.58832 6.78381 6.83004 6.93010 7.08105 7.13300 8.02467 8.49546 8.95553 9.31032 9.67304 10.24446 10.99620 Molecular weight = 277.18amu Principal moments of inertia in cm(-1) A = 0.014747 B = 0.007476 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.211938 B = 3744.621965 C = 5059.023044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.041 3.959 3 Si 1.073 2.927 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.423 4.423 8 H 0.070 0.930 9 N -0.449 5.449 10 C 0.485 3.515 11 O -0.534 6.534 12 C -0.165 4.165 13 H 0.103 0.897 14 C -0.151 4.151 15 C -0.100 4.100 16 C -0.070 4.070 17 C -0.128 4.128 18 C -0.120 4.120 19 C -0.087 4.087 20 C 0.128 3.872 21 C -0.129 4.129 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.270 0.730 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 -10.324 -2.311 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.172 4.172 3 Si 0.901 3.099 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.549 4.549 8 H 0.087 0.913 9 N -0.171 5.171 10 C 0.272 3.728 11 O -0.413 6.413 12 C -0.186 4.186 13 H 0.121 0.879 14 C -0.189 4.189 15 C -0.101 4.101 16 C -0.107 4.107 17 C -0.166 4.166 18 C -0.158 4.158 19 C -0.124 4.124 20 C 0.023 3.977 21 C -0.167 4.167 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.044 -8.139 -2.687 8.635 hybrid contribution 0.232 -1.992 0.281 2.025 sum -0.812 -10.131 -2.407 10.445 Atomic orbital electron populations 1.70527 1.07467 1.30963 1.38929 1.26038 0.95971 1.01986 0.93203 0.83461 0.74456 0.75069 0.76934 1.21207 1.21406 1.21609 1.19731 0.98819 0.87034 1.49328 0.91268 1.43526 1.47574 1.07331 1.18657 1.19302 0.83721 0.88096 0.81647 1.90580 1.61633 1.31333 1.57736 1.22392 1.04599 1.00232 0.91402 0.87919 1.22925 0.97337 0.98761 0.99858 1.21654 0.91476 0.97858 0.99088 1.21786 0.97714 0.94889 0.96320 1.22574 0.97179 0.98700 0.98116 1.22312 0.97448 0.97570 0.98466 1.21633 0.93587 0.97430 0.99750 1.21766 0.94688 0.88508 0.92736 1.22686 0.97025 1.01861 0.95159 1.22414 0.95769 0.98998 0.98692 1.22257 0.96476 1.00850 0.95851 1.22395 0.97710 1.00629 0.95859 0.91920 0.88793 0.89156 0.89452 0.91872 0.92255 0.92005 0.92248 0.91708 0.91987 0.91966 0.91373 0.89515 0.93150 0.92466 0.92283 0.92866 0.91550 0.93037 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.52 12.38 55.50 0.69 -24.84 16 2 C 0.04 1.15 4.20 -17.47 -0.07 1.08 16 3 Si 1.07 25.91 29.98 -169.99 -5.10 20.82 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.42 -11.44 7.48 -14.93 -0.11 -11.55 16 8 H 0.07 1.87 6.93 -52.49 -0.36 1.50 16 9 N -0.45 -10.96 2.21 -106.54 -0.24 -11.20 16 10 C 0.48 12.04 6.23 -10.99 -0.07 11.97 16 11 O -0.53 -15.23 11.59 5.55 0.06 -15.16 16 12 C -0.16 -3.24 4.84 -91.95 -0.44 -3.68 16 13 H 0.10 1.87 6.72 -51.93 -0.35 1.52 16 14 C -0.15 -2.55 9.94 -26.89 -0.27 -2.82 16 15 C -0.10 -1.77 2.45 -154.23 -0.38 -2.15 16 16 C -0.07 -1.33 4.77 -25.23 -0.12 -1.45 16 17 C -0.13 -1.91 6.91 -24.67 -0.17 -2.08 16 18 C -0.12 -1.64 6.84 -24.99 -0.17 -1.81 16 19 C -0.09 -1.25 6.55 -25.75 -0.17 -1.42 16 20 C 0.13 2.53 3.17 -66.81 -0.21 2.32 16 21 C -0.13 -2.42 6.42 -25.07 -0.16 -2.58 16 22 C -0.12 -1.84 6.91 -24.74 -0.17 -2.01 16 23 C -0.12 -1.83 6.83 -25.07 -0.17 -2.00 16 24 C -0.13 -2.27 6.19 -25.61 -0.16 -2.43 16 25 H 0.27 8.24 7.44 -40.82 -0.30 7.94 16 26 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 2.00 6.97 -51.93 -0.36 1.64 16 29 H 0.06 1.28 8.00 -51.93 -0.42 0.86 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.25 5.55 -51.93 -0.29 0.96 16 37 H 0.09 1.94 7.22 -51.93 -0.38 1.57 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.54 6.65 -51.93 -0.35 1.20 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -30.98 336.69 -9.87 -40.85 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.52 Total: 5.07 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.85 Total: -20.61 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.45 Total: -36.04 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.06 Total: -15.16 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.10 Total: 20.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.98 -9.87 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075091891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.844 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds